Wall clock time and date at job start Tue Mar 31 2020 12:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47053 * 2 1 4 4 C 1.38238 * 119.99958 * 269.73152 * 3 2 1 5 5 C 1.38233 * 119.99541 * 179.76999 * 4 3 2 6 6 C 1.38236 * 120.00379 * 0.47794 * 5 4 3 7 7 C 1.50693 * 120.00314 * 179.77364 * 6 5 4 8 8 C 1.53000 * 109.47087 * 270.02364 * 7 6 5 9 9 C 1.50703 * 109.47406 * 179.97438 * 8 7 6 10 10 O 1.21296 * 119.99467 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00082 * 179.97438 * 9 8 7 12 12 C 1.37094 * 120.00357 * 0.02562 * 11 9 8 13 13 H 1.08004 * 119.99749 * 326.01528 * 12 11 9 14 14 C 1.38955 * 120.00389 * 146.01180 * 12 11 9 15 15 N 1.31406 * 119.99709 * 337.81324 * 14 12 11 16 16 Si 1.86793 * 119.99954 * 157.81367 * 14 12 11 17 17 H 1.48503 * 109.47481 * 60.00307 * 16 14 12 18 18 H 1.48505 * 109.47043 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47246 * 299.99654 * 16 14 12 20 20 C 1.46508 * 119.99857 * 180.02562 * 11 9 8 21 21 C 1.52992 * 109.47310 * 84.53778 * 20 11 9 22 22 C 1.50693 * 109.47029 * 179.97438 * 21 20 11 23 23 O 1.20827 * 120.00317 * 0.02562 * 22 21 20 24 24 O 1.34236 * 119.99944 * 179.97438 * 22 21 20 25 25 C 1.38235 * 119.99450 * 359.79242 * 6 5 4 26 26 C 1.38231 * 120.00510 * 359.95882 * 25 6 5 27 27 H 1.09003 * 109.47189 * 299.99892 * 1 2 3 28 28 H 1.09004 * 109.46823 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47385 * 59.99946 * 1 2 3 30 30 H 1.08999 * 109.47385 * 120.00054 * 2 1 3 31 31 H 1.09008 * 109.46823 * 240.00352 * 2 1 3 32 32 H 1.07996 * 119.99871 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.99916 * 180.25336 * 5 4 3 34 34 H 1.09004 * 109.47495 * 30.01967 * 7 6 5 35 35 H 1.08995 * 109.47528 * 150.02254 * 7 6 5 36 36 H 1.08999 * 109.46872 * 299.99717 * 8 7 6 37 37 H 1.09003 * 109.47349 * 59.99555 * 8 7 6 38 38 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.46402 * 204.54372 * 20 11 9 40 40 H 1.08998 * 109.46654 * 324.53724 * 20 11 9 41 41 H 1.08999 * 109.47112 * 300.00139 * 21 20 11 42 42 H 1.09002 * 109.47114 * 59.99893 * 21 20 11 43 43 H 0.96697 * 116.99799 * 179.97438 * 24 22 21 44 44 H 1.08005 * 119.99808 * 179.97438 * 25 6 5 45 45 H 1.07998 * 120.00360 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7242 3.3755 -1.1971 6 6 2.9542 4.0273 0.0000 7 6 3.4564 5.4481 0.0001 8 6 4.9864 5.4482 0.0000 9 6 5.4888 6.8690 -0.0006 10 8 4.7005 7.7909 -0.0004 11 7 6.8138 7.1153 -0.0002 12 6 7.7047 6.0734 0.0001 13 1 7.4661 5.1590 0.5230 14 6 8.9148 6.1937 -0.6723 15 7 9.0435 7.0719 -1.6413 16 14 10.3584 5.1070 -0.1987 17 1 9.9861 3.6812 -0.3826 18 1 11.5244 5.4296 -1.0600 19 1 10.7129 5.3467 1.2233 20 6 7.3021 8.4967 -0.0002 21 6 7.3422 9.0234 1.4356 22 6 7.8450 10.4440 1.4356 23 8 8.1405 10.9803 0.3940 24 8 7.9637 11.1139 2.5927 25 6 2.7239 3.3756 1.1971 26 6 2.2627 2.0724 1.1972 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 2.0926 1.5599 -2.1324 33 1 2.9045 3.8846 -2.1324 34 1 3.0931 5.9620 -0.8899 35 1 3.0932 5.9619 0.8901 36 1 5.3498 4.9344 0.8900 37 1 5.3498 4.9344 -0.8900 38 1 9.8883 7.1561 -2.1104 39 1 8.3047 8.5275 -0.4269 40 1 6.6341 9.1180 -0.5967 41 1 6.3396 8.9925 1.8621 42 1 8.0101 8.4019 2.0321 43 1 8.2909 12.0225 2.5424 44 1 2.9039 3.8846 2.1325 45 1 2.0831 1.5631 2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597523105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:43 Heat of formation + Delta-G solvation = -125.773061 kcal Electronic energy + Delta-G solvation = -26091.923756 eV Core-core repulsion = 22266.405534 eV Total energy + Delta-G solvation = -3825.518222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.83384 -39.47255 -38.52891 -35.83520 -35.24412 -34.69116 -32.27342 -31.87686 -30.77392 -30.61787 -28.44452 -25.29522 -25.04711 -23.53011 -22.57680 -22.10272 -20.54424 -20.10178 -19.07083 -17.76759 -16.81850 -16.32219 -15.94114 -15.78634 -15.62840 -15.41525 -14.92482 -14.52539 -14.29861 -14.21482 -13.73666 -13.70956 -13.25840 -13.00321 -12.97632 -12.76340 -12.58057 -12.30645 -12.05469 -11.70157 -11.56762 -11.32758 -11.28880 -11.17386 -11.14486 -11.05888 -10.80277 -10.73451 -10.58285 -10.44663 -10.28766 -10.13297 -10.05014 -9.18458 -8.76616 -8.57975 -8.23792 -7.65317 -6.44000 -4.12622 1.48961 1.55957 2.67304 3.08776 3.18712 3.19312 3.42091 3.84191 3.89515 4.08532 4.69615 4.78709 4.81206 4.91830 5.11677 5.13709 5.22631 5.27590 5.43586 5.54189 5.60684 5.62875 5.75045 5.77688 5.80644 5.85216 5.90271 5.96770 6.01785 6.11577 6.20459 6.31357 6.33809 6.43848 6.53477 6.60402 6.71248 6.75524 6.82509 6.89552 6.95005 7.18370 7.29445 7.43384 7.81908 8.27896 8.32129 9.00756 9.43212 9.86202 10.57552 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.002971 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.566597 B = 9423.544302 C =10689.346257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.097 4.097 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.072 4.072 7 C -0.066 4.066 8 C -0.110 4.110 9 C 0.469 3.531 10 O -0.606 6.606 11 N -0.438 5.438 12 C -0.348 4.348 13 H 0.093 0.907 14 C 0.044 3.956 15 N -0.851 5.851 16 Si 0.912 3.088 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.126 3.874 21 C -0.125 4.125 22 C 0.483 3.517 23 O -0.514 6.514 24 O -0.525 6.525 25 C -0.115 4.115 26 C -0.118 4.118 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.272 0.728 39 H 0.118 0.882 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.401 0.599 44 H 0.121 0.879 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.700 -8.404 5.484 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.097 4.097 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.072 4.072 7 C -0.104 4.104 8 C -0.150 4.150 9 C 0.259 3.741 10 O -0.492 6.492 11 N -0.156 5.156 12 C -0.476 4.476 13 H 0.111 0.889 14 C -0.163 4.163 15 N -0.487 5.487 16 Si 0.738 3.262 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.197 1.197 20 C 0.002 3.998 21 C -0.164 4.164 22 C 0.325 3.675 23 O -0.401 6.401 24 O -0.337 6.337 25 C -0.133 4.133 26 C -0.136 4.136 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.081 0.919 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.258 0.742 44 H 0.139 0.861 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.972 -8.147 5.048 13.129 hybrid contribution 1.214 0.067 0.159 1.226 sum -7.758 -8.081 5.207 12.353 Atomic orbital electron populations 1.21748 0.95011 1.01362 1.02206 1.20505 0.95949 0.93012 1.02551 1.19806 1.00451 0.96092 0.93347 1.20967 1.00334 0.94936 0.97265 1.21099 0.99404 0.94686 0.97957 1.20086 0.97502 0.96655 0.92969 1.20387 0.95271 0.90944 1.03755 1.21310 0.93794 0.96031 1.03851 1.20509 0.82857 0.90552 0.80230 1.90532 1.55740 1.46601 1.56362 1.43437 1.03820 1.05146 1.63218 1.19413 0.98421 0.96552 1.33184 0.88899 1.25362 0.99843 0.97479 0.93580 1.69927 1.26284 1.35099 1.17369 0.86236 0.80705 0.80376 0.78853 1.19593 1.20856 1.19742 1.21191 1.04402 0.83171 0.91080 1.21869 1.03055 0.87713 1.03773 1.23798 0.73728 0.89500 0.80466 1.90704 1.46413 1.69700 1.33321 1.84594 1.79865 1.31853 1.37350 1.21063 0.99713 0.94718 0.97822 1.20948 1.00458 0.94959 0.97230 0.92626 0.92681 0.92599 0.91303 0.91278 0.86515 0.86010 0.90692 0.90846 0.90316 0.89459 0.91725 0.86476 0.91871 0.88370 0.87903 0.74160 0.86135 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.08 -0.75 6.07 -27.88 -0.17 -0.92 16 3 C -0.10 -1.13 5.13 -104.62 -0.54 -1.67 16 4 C -0.12 -1.45 9.70 -39.58 -0.38 -1.83 16 5 C -0.11 -1.58 9.70 -39.58 -0.38 -1.96 16 6 C -0.07 -1.06 5.13 -104.63 -0.54 -1.60 16 7 C -0.07 -1.10 4.63 -27.89 -0.13 -1.23 16 8 C -0.11 -2.10 4.34 -27.88 -0.12 -2.22 16 9 C 0.47 10.90 7.60 -10.99 -0.08 10.81 16 10 O -0.61 -15.28 15.65 5.54 0.09 -15.19 16 11 N -0.44 -10.61 2.56 -114.81 -0.29 -10.90 16 12 C -0.35 -8.43 8.70 -14.93 -0.13 -8.56 16 13 H 0.09 2.12 6.97 -52.48 -0.37 1.76 16 14 C 0.04 1.09 4.92 -17.47 -0.09 1.00 16 15 N -0.85 -22.26 11.34 55.50 0.63 -21.64 16 16 Si 0.91 18.89 29.61 -169.99 -5.03 13.85 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 20 C 0.13 3.00 4.19 -4.04 -0.02 2.98 16 21 C -0.13 -2.47 6.10 -27.89 -0.17 -2.64 16 22 C 0.48 8.94 8.33 36.00 0.30 9.24 16 23 O -0.51 -11.06 16.74 -18.75 -0.31 -11.37 16 24 O -0.52 -7.56 13.42 -39.27 -0.53 -8.09 16 25 C -0.12 -1.55 9.70 -39.58 -0.38 -1.93 16 26 C -0.12 -1.42 9.70 -39.59 -0.38 -1.81 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.07 0.58 8.08 -51.92 -0.42 0.16 16 32 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 34 H 0.07 1.31 8.04 -51.93 -0.42 0.90 16 35 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 36 H 0.08 1.42 7.64 -51.93 -0.40 1.02 16 37 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 38 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 39 H 0.12 3.04 5.31 -51.93 -0.28 2.76 16 40 H 0.06 1.62 7.55 -51.93 -0.39 1.23 16 41 H 0.10 1.91 8.14 -51.93 -0.42 1.48 16 42 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 43 H 0.40 3.82 9.10 45.56 0.41 4.23 16 44 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 45 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -30.41 382.66 -8.58 -38.99 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.05 Total: 11.71 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.85 Total: -3.13 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.34 Total: -32.54 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.75 Total: -34.66 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.41 -8.58 -38.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597523105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.780 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds