Wall clock time and date at job start Tue Mar 31 2020 12:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47053 * 2 1 4 4 C 1.38238 * 119.99958 * 269.73152 * 3 2 1 5 5 C 1.38233 * 119.99541 * 179.76999 * 4 3 2 6 6 C 1.38236 * 120.00379 * 0.47794 * 5 4 3 7 7 C 1.50693 * 120.00314 * 179.77364 * 6 5 4 8 8 C 1.53000 * 109.47087 * 270.02364 * 7 6 5 9 9 C 1.50703 * 109.47406 * 179.97438 * 8 7 6 10 10 O 1.21296 * 119.99467 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00082 * 179.97438 * 9 8 7 12 12 C 1.37094 * 120.00357 * 0.02562 * 11 9 8 13 13 H 1.08004 * 119.99749 * 326.01528 * 12 11 9 14 14 C 1.38955 * 120.00389 * 146.01180 * 12 11 9 15 15 N 1.31406 * 119.99709 * 337.81324 * 14 12 11 16 16 Si 1.86793 * 119.99954 * 157.81367 * 14 12 11 17 17 H 1.48503 * 109.47481 * 60.00307 * 16 14 12 18 18 H 1.48505 * 109.47043 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47246 * 299.99654 * 16 14 12 20 20 C 1.46508 * 119.99857 * 180.02562 * 11 9 8 21 21 C 1.52992 * 109.47310 * 84.53778 * 20 11 9 22 22 C 1.50693 * 109.47029 * 179.97438 * 21 20 11 23 23 O 1.20827 * 120.00317 * 0.02562 * 22 21 20 24 24 O 1.34236 * 119.99944 * 179.97438 * 22 21 20 25 25 C 1.38235 * 119.99450 * 359.79242 * 6 5 4 26 26 C 1.38231 * 120.00510 * 359.95882 * 25 6 5 27 27 H 1.09003 * 109.47189 * 299.99892 * 1 2 3 28 28 H 1.09004 * 109.46823 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47385 * 59.99946 * 1 2 3 30 30 H 1.08999 * 109.47385 * 120.00054 * 2 1 3 31 31 H 1.09008 * 109.46823 * 240.00352 * 2 1 3 32 32 H 1.07996 * 119.99871 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.99916 * 180.25336 * 5 4 3 34 34 H 1.09004 * 109.47495 * 30.01967 * 7 6 5 35 35 H 1.08995 * 109.47528 * 150.02254 * 7 6 5 36 36 H 1.08999 * 109.46872 * 299.99717 * 8 7 6 37 37 H 1.09003 * 109.47349 * 59.99555 * 8 7 6 38 38 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.46402 * 204.54372 * 20 11 9 40 40 H 1.08998 * 109.46654 * 324.53724 * 20 11 9 41 41 H 1.08999 * 109.47112 * 300.00139 * 21 20 11 42 42 H 1.09002 * 109.47114 * 59.99893 * 21 20 11 43 43 H 0.96697 * 116.99799 * 179.97438 * 24 22 21 44 44 H 1.08005 * 119.99808 * 179.97438 * 25 6 5 45 45 H 1.07998 * 120.00360 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7242 3.3755 -1.1971 6 6 2.9542 4.0273 0.0000 7 6 3.4564 5.4481 0.0001 8 6 4.9864 5.4482 0.0000 9 6 5.4888 6.8690 -0.0006 10 8 4.7005 7.7909 -0.0004 11 7 6.8138 7.1153 -0.0002 12 6 7.7047 6.0734 0.0001 13 1 7.4661 5.1590 0.5230 14 6 8.9148 6.1937 -0.6723 15 7 9.0435 7.0719 -1.6413 16 14 10.3584 5.1070 -0.1987 17 1 9.9861 3.6812 -0.3826 18 1 11.5244 5.4296 -1.0600 19 1 10.7129 5.3467 1.2233 20 6 7.3021 8.4967 -0.0002 21 6 7.3422 9.0234 1.4356 22 6 7.8450 10.4440 1.4356 23 8 8.1405 10.9803 0.3940 24 8 7.9637 11.1139 2.5927 25 6 2.7239 3.3756 1.1971 26 6 2.2627 2.0724 1.1972 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 2.0926 1.5599 -2.1324 33 1 2.9045 3.8846 -2.1324 34 1 3.0931 5.9620 -0.8899 35 1 3.0932 5.9619 0.8901 36 1 5.3498 4.9344 0.8900 37 1 5.3498 4.9344 -0.8900 38 1 9.8883 7.1561 -2.1104 39 1 8.3047 8.5275 -0.4269 40 1 6.6341 9.1180 -0.5967 41 1 6.3396 8.9925 1.8621 42 1 8.0101 8.4019 2.0321 43 1 8.2909 12.0225 2.5424 44 1 2.9039 3.8846 2.1325 45 1 2.0831 1.5631 2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597523105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:41 Heat of formation + Delta-G solvation = -141.573718 kcal Electronic energy + Delta-G solvation = -26092.608924 eV Core-core repulsion = 22266.405534 eV Total energy + Delta-G solvation = -3826.203390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.36026 -40.67137 -40.11681 -37.29459 -36.87005 -35.90288 -33.85697 -33.38155 -32.24347 -31.75279 -29.58954 -27.09087 -26.49157 -24.85534 -23.55874 -23.22789 -21.97657 -21.23470 -20.90833 -19.26386 -18.52455 -17.92340 -17.57422 -17.04741 -16.80646 -16.71653 -16.25342 -16.06322 -15.85971 -15.76411 -14.75246 -14.66227 -14.43602 -14.36407 -14.23904 -14.10116 -13.92495 -13.77253 -13.41789 -13.16624 -12.99646 -12.80214 -12.60217 -12.56946 -12.54666 -12.25845 -12.19634 -12.12189 -11.90848 -11.78451 -11.67282 -11.59065 -11.55794 -11.03141 -10.39963 -9.75600 -9.56878 -9.32344 -8.31173 -6.05963 0.47657 0.56895 1.17354 1.44575 1.50801 1.59312 1.93626 2.07549 2.36613 2.84929 3.06097 3.11537 3.87998 3.94077 3.98941 4.05278 4.13473 4.21187 4.21948 4.37017 4.43841 4.46385 4.56527 4.58418 4.67261 4.71597 4.74806 4.76588 4.84113 5.00815 5.08026 5.11634 5.13002 5.20351 5.30831 5.31732 5.35873 5.43440 5.50485 5.58553 5.59893 5.78599 5.83834 5.95380 6.19862 6.39339 6.98936 7.11560 7.56195 7.99187 8.71230 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.002971 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.566597 B = 9423.544302 C =10689.346257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.095 4.095 4 C -0.123 4.123 5 C -0.128 4.128 6 C -0.091 4.091 7 C -0.053 4.053 8 C -0.097 4.097 9 C 0.457 3.543 10 O -0.632 6.632 11 N -0.449 5.449 12 C -0.357 4.357 13 H 0.108 0.892 14 C 0.002 3.998 15 N -0.891 5.891 16 Si 0.980 3.020 17 H -0.261 1.261 18 H -0.289 1.289 19 H -0.262 1.262 20 C 0.130 3.870 21 C -0.116 4.116 22 C 0.495 3.505 23 O -0.550 6.550 24 O -0.507 6.507 25 C -0.122 4.122 26 C -0.121 4.121 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.271 0.729 39 H 0.097 0.903 40 H 0.031 0.969 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.427 0.573 44 H 0.129 0.871 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.789 -10.774 7.317 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.095 4.095 4 C -0.141 4.141 5 C -0.146 4.146 6 C -0.092 4.092 7 C -0.091 4.091 8 C -0.137 4.137 9 C 0.248 3.752 10 O -0.521 6.521 11 N -0.167 5.167 12 C -0.484 4.484 13 H 0.125 0.875 14 C -0.201 4.201 15 N -0.528 5.528 16 Si 0.804 3.196 17 H -0.185 1.185 18 H -0.215 1.215 19 H -0.187 1.187 20 C 0.005 3.995 21 C -0.155 4.155 22 C 0.338 3.662 23 O -0.440 6.440 24 O -0.320 6.320 25 C -0.140 4.140 26 C -0.138 4.138 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.153 0.847 33 H 0.137 0.863 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.049 0.951 41 H 0.120 0.880 42 H 0.136 0.864 43 H 0.288 0.712 44 H 0.147 0.853 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.067 -10.509 6.918 15.508 hybrid contribution 1.177 0.834 -0.403 1.498 sum -7.890 -9.675 6.515 14.082 Atomic orbital electron populations 1.21734 0.94213 1.02370 1.01828 1.20573 0.96524 0.91223 1.03603 1.20197 0.99016 0.97367 0.92888 1.21219 0.99885 0.94343 0.98624 1.21210 1.00069 0.95639 0.97659 1.19918 0.99532 0.95603 0.94102 1.20191 0.93525 0.92617 1.02730 1.21240 0.95375 0.93062 1.04016 1.21250 0.82453 0.92060 0.79444 1.90502 1.56265 1.47866 1.57424 1.43682 1.04374 1.05323 1.63286 1.19796 0.98535 0.96970 1.33127 0.87495 1.26228 1.02130 0.98692 0.93079 1.70059 1.26789 1.37172 1.18749 0.85184 0.76965 0.78874 0.78613 1.18534 1.21473 1.18708 1.20964 1.02147 0.83134 0.93246 1.21613 1.03809 0.89079 1.01003 1.23376 0.72924 0.89097 0.80779 1.90705 1.48130 1.70371 1.34836 1.84505 1.79222 1.33605 1.34692 1.21226 0.99728 0.95493 0.97569 1.21251 0.99653 0.94423 0.98522 0.92890 0.91018 0.93132 0.90113 0.90430 0.84663 0.86286 0.92341 0.91233 0.88898 0.90133 0.91894 0.88551 0.95072 0.87987 0.86447 0.71150 0.85301 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.08 -1.23 6.07 29.85 0.18 -1.05 16 3 C -0.09 -1.99 5.13 -19.86 -0.10 -2.09 16 4 C -0.12 -2.85 9.70 22.27 0.22 -2.63 16 5 C -0.13 -3.52 9.70 22.27 0.22 -3.30 16 6 C -0.09 -2.68 5.13 -19.87 -0.10 -2.79 16 7 C -0.05 -1.81 4.63 29.85 0.14 -1.67 16 8 C -0.10 -3.76 4.34 29.85 0.13 -3.63 16 9 C 0.46 21.80 7.60 87.66 0.67 22.47 16 10 O -0.63 -33.03 15.65 -3.08 -0.05 -33.08 16 11 N -0.45 -22.23 2.56 -635.53 -1.63 -23.85 16 12 C -0.36 -17.29 8.70 84.04 0.73 -16.56 16 13 H 0.11 4.78 6.97 -2.91 -0.02 4.76 16 14 C 0.00 0.10 4.92 84.93 0.42 0.52 16 15 N -0.89 -47.76 11.34 21.66 0.25 -47.52 16 16 Si 0.98 38.21 29.61 68.60 2.03 40.24 16 17 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 18 H -0.29 -11.45 7.11 99.48 0.71 -10.75 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 20 C 0.13 6.41 4.19 86.38 0.36 6.77 16 21 C -0.12 -4.60 6.10 29.84 0.18 -4.42 16 22 C 0.49 18.11 8.33 71.23 0.59 18.70 16 23 O -0.55 -24.00 16.74 21.96 0.37 -23.64 16 24 O -0.51 -13.50 13.42 -51.48 -0.69 -14.19 16 25 C -0.12 -3.13 9.70 22.27 0.22 -2.91 16 26 C -0.12 -2.63 9.70 22.27 0.22 -2.41 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 31 H 0.08 1.05 8.08 -2.38 -0.02 1.03 16 32 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 33 H 0.12 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.06 2.15 8.04 -2.38 -0.02 2.13 16 35 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 36 H 0.09 3.30 7.64 -2.39 -0.02 3.28 16 37 H 0.08 3.21 8.10 -2.39 -0.02 3.20 16 38 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 39 H 0.10 5.21 5.31 -2.38 -0.01 5.19 16 40 H 0.03 1.69 7.55 -2.39 -0.02 1.67 16 41 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 42 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 43 H 0.43 6.99 9.10 -74.06 -0.67 6.32 16 44 H 0.13 2.99 8.06 -2.91 -0.02 2.96 16 45 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -67.02 382.66 5.37 -61.64 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: 0.32 Total: 36.59 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 4.77 Total: 3.79 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -1.38 Total: -71.37 kcal Atomic # 8 Polarization: -70.53 SS G_CDS: -0.37 Total: -70.90 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -67.02 5.37 -61.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597523105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.930 kcal (2) G-P(sol) polarization free energy of solvation -67.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds