Wall clock time and date at job start Tue Mar 31 2020 12:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.52408 * 2 1 4 4 O 1.21277 * 120.00410 * 119.99756 * 3 2 1 5 5 N 1.34783 * 119.99979 * 299.99702 * 3 2 1 6 6 C 1.46503 * 120.00340 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.46935 * 180.02562 * 6 5 3 8 8 C 1.38323 * 119.96578 * 90.00238 * 7 6 5 9 9 C 1.38278 * 120.13283 * 180.27073 * 8 7 6 10 10 C 1.38115 * 120.07300 * 359.44684 * 9 8 7 11 11 C 1.38858 * 119.92981 * 0.52730 * 10 9 8 12 12 O 1.35756 * 120.06979 * 179.76669 * 11 10 9 13 13 C 1.34824 * 117.00195 * 354.44124 * 12 11 10 14 14 H 1.08008 * 119.99737 * 5.05937 * 13 12 11 15 15 C 1.38644 * 120.00377 * 185.05149 * 13 12 11 16 16 N 1.31561 * 120.00539 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99864 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47334 * 89.99608 * 17 15 13 19 19 H 1.48503 * 109.47316 * 209.99664 * 17 15 13 20 20 H 1.48506 * 109.47204 * 329.99756 * 17 15 13 21 21 C 1.38082 * 119.96014 * 269.97357 * 7 6 5 22 22 C 1.53176 * 109.52144 * 120.12147 * 2 1 3 23 23 C 1.53310 * 108.96758 * 176.88576 * 22 2 1 24 24 C 1.53083 * 109.19913 * 303.06180 * 23 22 2 25 25 O 1.42902 * 109.41630 * 57.60257 * 24 23 22 26 26 C 1.42897 * 114.09982 * 298.84744 * 25 24 23 27 27 H 1.09004 * 109.47081 * 59.99782 * 1 2 3 28 28 H 1.08993 * 109.47490 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47258 * 300.00274 * 1 2 3 30 30 H 0.96999 * 119.99716 * 0.02562 * 5 3 2 31 31 H 1.08994 * 109.46758 * 59.99734 * 6 5 3 32 32 H 1.09006 * 109.46690 * 300.00215 * 6 5 3 33 33 H 1.07992 * 119.93347 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.96025 * 179.70065 * 9 8 7 35 35 H 1.08003 * 120.03674 * 180.27179 * 10 9 8 36 36 H 0.96993 * 120.00161 * 180.02562 * 16 15 13 37 37 H 1.07999 * 120.03721 * 0.02699 * 21 7 6 38 38 H 1.08999 * 109.54765 * 296.81575 * 22 2 1 39 39 H 1.09006 * 109.54187 * 57.08148 * 22 2 1 40 40 H 1.08997 * 109.50866 * 183.13841 * 23 22 2 41 41 H 1.09001 * 109.50566 * 62.97828 * 23 22 2 42 42 H 1.09000 * 109.48169 * 297.62164 * 24 23 22 43 43 H 1.09005 * 109.49224 * 177.59569 * 24 23 22 44 44 H 1.09001 * 109.48093 * 301.17515 * 26 25 24 45 45 H 1.09000 * 109.49338 * 181.14591 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4203 0.0000 4 8 2.7312 1.8164 0.9096 5 7 1.7088 2.2505 -1.0109 6 6 2.1988 3.6311 -1.0113 7 6 1.6965 4.3421 -2.2414 8 6 0.4887 5.0152 -2.2056 9 6 0.0218 5.6640 -3.3339 10 6 0.7661 5.6514 -4.4973 11 6 1.9793 4.9769 -4.5363 12 8 2.7109 4.9587 -5.6797 13 6 2.1519 5.5153 -6.7731 14 1 1.2007 6.0211 -6.6952 15 6 2.7980 5.4386 -7.9974 16 7 2.2528 5.9821 -9.0642 17 14 4.4428 4.5634 -8.1322 18 1 4.2163 3.1288 -8.4420 19 1 5.2459 5.1832 -9.2167 20 1 5.1738 4.6824 -6.8450 21 6 2.4429 4.3213 -3.4029 22 6 2.0418 -0.7245 1.2488 23 6 3.5728 -0.7856 1.1970 24 6 4.0056 -1.4794 -0.0971 25 8 3.4695 -0.7725 -1.2173 26 6 2.0416 -0.7243 -1.2479 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.1506 1.9338 -1.7382 31 1 3.2888 3.6297 -1.0115 32 1 1.8363 4.1455 -0.1212 33 1 -0.0932 5.0300 -1.2959 34 1 -0.9240 6.1847 -3.3042 35 1 0.4030 6.1620 -5.3770 36 1 2.7047 5.9281 -9.9208 37 1 3.3859 3.7956 -3.4302 38 1 1.7270 -0.1818 2.1400 39 1 1.6375 -1.7365 1.2746 40 1 3.9438 -1.3482 2.0537 41 1 3.9784 0.2259 1.2212 42 1 3.6337 -2.5040 -0.1021 43 1 5.0938 -1.4874 -0.1592 44 1 1.6440 -1.7390 -1.2679 45 1 1.7148 -0.1882 -2.1390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771646811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:44 Heat of formation + Delta-G solvation = -94.134856 kcal Electronic energy + Delta-G solvation = -26903.508055 eV Core-core repulsion = 23079.361769 eV Total energy + Delta-G solvation = -3824.146287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.93440 -39.35266 -38.33246 -36.96321 -34.70269 -34.68561 -32.47882 -32.36685 -30.67938 -29.39946 -27.27073 -26.21769 -25.32781 -25.12095 -23.24117 -21.90615 -21.64232 -20.71033 -19.59480 -17.83872 -17.46401 -16.89066 -16.47161 -15.97745 -15.65306 -15.51972 -15.26463 -14.94966 -14.64531 -14.36947 -14.08389 -14.01656 -13.83007 -13.42188 -13.07369 -12.86702 -12.62398 -12.56419 -12.49289 -12.31703 -12.22888 -12.18234 -11.98934 -11.47357 -11.23526 -10.95295 -10.87766 -10.84685 -10.78871 -10.70312 -10.20453 -9.87912 -9.52279 -9.45168 -8.98191 -8.93116 -8.33244 -7.48848 -6.46841 -4.14239 1.80660 2.14334 2.62399 3.19251 3.23040 3.28347 3.38608 3.69110 4.19981 4.22520 4.34487 4.45955 4.51430 4.65673 4.74119 4.84409 4.94046 5.03598 5.10128 5.14350 5.17070 5.30388 5.33383 5.38702 5.42671 5.51401 5.59332 5.64352 5.68683 5.74060 5.80070 5.86196 5.91149 6.00831 6.14956 6.21895 6.41638 6.48203 6.67160 6.94619 6.99252 7.10737 7.19737 7.47108 7.55851 7.72396 7.96973 8.23786 8.88181 9.49294 10.60553 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.003172 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.978202 B = 8825.238415 C = 9929.143952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C 0.532 3.468 4 O -0.540 6.540 5 N -0.717 5.717 6 C 0.169 3.831 7 C -0.075 4.075 8 C -0.187 4.187 9 C -0.078 4.078 10 C -0.213 4.213 11 C 0.157 3.843 12 O -0.215 6.215 13 C -0.391 4.391 14 H 0.107 0.893 15 C 0.065 3.935 16 N -0.878 5.878 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.259 1.259 21 C -0.170 4.170 22 C -0.094 4.094 23 C -0.167 4.167 24 C 0.059 3.941 25 O -0.374 6.374 26 C 0.072 3.928 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.401 0.599 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.280 0.720 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.047 0.953 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 -13.902 17.982 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C 0.318 3.682 4 O -0.417 6.417 5 N -0.368 5.368 6 C 0.046 3.954 7 C -0.076 4.076 8 C -0.207 4.207 9 C -0.096 4.096 10 C -0.232 4.232 11 C 0.105 3.895 12 O -0.120 6.120 13 C -0.467 4.467 14 H 0.124 0.876 15 C -0.139 4.139 16 N -0.516 5.516 17 Si 0.730 3.270 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.183 1.183 21 C -0.190 4.190 22 C -0.131 4.131 23 C -0.205 4.205 24 C -0.018 4.018 25 O -0.293 6.293 26 C -0.005 4.005 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.236 0.764 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.494 -13.549 18.189 22.817 hybrid contribution 0.027 -0.418 -0.505 0.656 sum -2.466 -13.967 17.685 22.669 Atomic orbital electron populations 1.21793 0.91720 1.03111 1.03164 1.21533 0.97754 0.93736 0.99142 1.20159 0.79754 0.86629 0.81662 1.90616 1.37841 1.77027 1.36261 1.46087 1.53421 1.12217 1.25106 1.20135 0.99128 0.80471 0.95653 1.19275 0.95376 0.99376 0.93533 1.20538 0.97226 1.04395 0.98492 1.20797 0.98528 0.97724 0.92531 1.21360 0.96722 1.05476 0.99659 1.19064 0.90157 0.93221 0.87108 1.83581 1.41502 1.70889 1.16037 1.20760 1.07326 1.34630 0.83946 0.87598 1.24462 0.99330 0.96519 0.93573 1.69642 1.39257 1.42938 0.99722 0.86193 0.82449 0.79683 0.78682 1.19806 1.20719 1.18292 1.20105 1.02022 1.05382 0.91501 1.21436 0.95935 0.99433 0.96342 1.22411 0.96183 1.04119 0.97747 1.22638 0.99169 0.94170 0.85831 1.88018 1.19422 1.76413 1.45413 1.22648 0.81905 0.99734 0.96234 0.91548 0.91221 0.91548 0.76431 0.90883 0.90979 0.87350 0.87005 0.84845 0.90966 0.86332 0.90704 0.91447 0.91138 0.88482 0.93433 0.88922 0.91994 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.38 37.16 0.31 -0.70 16 2 C -0.12 -1.13 0.63 -155.53 -0.10 -1.22 16 3 C 0.53 6.85 5.91 -10.99 -0.06 6.78 16 4 O -0.54 -8.60 13.84 5.56 0.08 -8.53 16 5 N -0.72 -8.96 5.32 -61.47 -0.33 -9.29 16 6 C 0.17 2.36 5.80 -5.19 -0.03 2.33 16 7 C -0.07 -1.19 5.25 -104.65 -0.55 -1.74 16 8 C -0.19 -2.89 9.70 -39.54 -0.38 -3.27 16 9 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 10 C -0.21 -4.36 9.17 -39.40 -0.36 -4.72 16 11 C 0.16 3.47 6.65 -39.11 -0.26 3.21 16 12 O -0.22 -5.54 8.59 0.05 0.00 -5.54 16 13 C -0.39 -10.78 9.95 30.88 0.31 -10.47 16 14 H 0.11 2.97 5.44 -52.48 -0.29 2.68 16 15 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 16 N -0.88 -24.98 13.96 55.48 0.77 -24.21 16 17 Si 0.90 21.45 28.62 -169.99 -4.86 16.58 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 21 C -0.17 -3.23 9.65 -39.39 -0.38 -3.61 16 22 C -0.09 -0.85 4.46 -26.48 -0.12 -0.97 16 23 C -0.17 -1.66 5.81 -26.53 -0.15 -1.82 16 24 C 0.06 0.57 6.84 37.20 0.25 0.82 16 25 O -0.37 -4.58 10.45 -35.23 -0.37 -4.95 16 26 C 0.07 0.69 5.46 37.20 0.20 0.89 16 27 H 0.07 0.45 7.57 -51.93 -0.39 0.06 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.40 4.47 7.29 -40.82 -0.30 4.17 16 31 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 32 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.13 2.89 5.64 -52.48 -0.30 2.59 16 36 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.07 0.73 8.02 -51.93 -0.42 0.31 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 1.27 5.82 -51.93 -0.30 0.97 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.91 7.52 -51.93 -0.39 0.52 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -30.96 364.22 -7.62 -38.58 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.58 Total: 6.35 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -1.82 Total: -14.49 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.45 Total: -33.50 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.29 Total: -19.01 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.86 Total: 16.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.96 -7.62 -38.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771646811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.555 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds