Wall clock time and date at job start Tue Mar 31 2020 12:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46896 * 2 1 4 4 C 1.53003 * 109.46807 * 120.00005 * 2 1 3 5 5 C 1.52996 * 109.47536 * 65.00307 * 4 2 1 6 6 C 1.50692 * 109.47075 * 179.97438 * 5 4 2 7 7 O 1.20821 * 120.00466 * 0.02562 * 6 5 4 8 8 O 1.34232 * 119.99945 * 179.97438 * 6 5 4 9 9 C 1.45200 * 117.00456 * 180.02562 * 8 6 5 10 10 C 1.50693 * 109.47507 * 180.02562 * 9 8 6 11 11 O 1.21284 * 119.99937 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00055 * 179.97438 * 10 9 8 13 13 C 1.39234 * 119.99787 * 184.28933 * 12 10 9 14 14 C 1.39480 * 119.83810 * 324.71162 * 13 12 10 15 15 C 1.36373 * 120.17151 * 180.29688 * 14 13 12 16 16 C 1.40869 * 119.82638 * 359.48095 * 15 14 13 17 17 C 1.41149 * 120.16615 * 180.24677 * 16 15 14 18 18 H 1.08002 * 120.00564 * 215.01718 * 17 16 15 19 19 C 1.39907 * 119.99949 * 35.01923 * 17 16 15 20 20 N 1.30873 * 119.99679 * 355.54737 * 19 17 16 21 21 Si 1.86795 * 120.00282 * 175.54331 * 19 17 16 22 22 H 1.48497 * 109.47333 * 59.99949 * 21 19 17 23 23 H 1.48503 * 109.47069 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47361 * 299.99743 * 21 19 17 25 25 C 1.40878 * 119.67448 * 0.51928 * 16 15 14 26 26 C 1.36371 * 119.82161 * 359.73123 * 25 16 15 27 27 H 1.08997 * 109.47183 * 60.00687 * 1 2 3 28 28 H 1.09008 * 109.46846 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47297 * 300.00152 * 1 2 3 30 30 H 1.08998 * 109.47297 * 239.99848 * 2 1 3 31 31 H 1.09005 * 109.47179 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46914 * 299.99706 * 3 2 1 33 33 H 1.08998 * 109.47271 * 59.99833 * 3 2 1 34 34 H 1.08998 * 109.47066 * 304.99294 * 4 2 1 35 35 H 1.09008 * 109.46569 * 185.00132 * 4 2 1 36 36 H 1.09006 * 109.47157 * 59.99357 * 5 4 2 37 37 H 1.09001 * 109.46719 * 300.00111 * 5 4 2 38 38 H 1.09005 * 109.46837 * 60.00183 * 9 8 6 39 39 H 1.09001 * 109.46863 * 300.01059 * 9 8 6 40 40 H 0.96994 * 119.99721 * 4.29555 * 12 10 9 41 41 H 1.07997 * 119.91386 * 0.02562 * 14 13 12 42 42 H 1.08003 * 120.08733 * 179.70254 * 15 14 13 43 43 H 0.97006 * 120.00240 * 180.02562 * 20 19 17 44 44 H 1.07991 * 120.08734 * 179.71251 * 25 16 15 45 45 H 1.08005 * 119.91371 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6353 -2.1955 1.1881 6 6 2.1381 -2.9059 2.4182 7 8 2.7563 -2.2957 3.2580 8 8 1.8983 -4.2165 2.5815 9 6 2.4119 -4.8351 3.7906 10 6 2.0493 -6.2977 3.7997 11 8 1.4202 -6.7722 2.8776 12 7 2.4248 -7.0787 4.8319 13 6 2.1682 -8.4468 4.7991 14 6 0.9991 -8.9195 4.2030 15 6 0.7381 -10.2577 4.1724 16 6 1.6580 -11.1640 4.7351 17 6 1.3975 -12.5509 4.7027 18 1 1.7058 -13.1777 5.5264 19 6 0.7400 -13.1137 3.6035 20 7 0.2891 -12.3436 2.6461 21 14 0.5056 -14.9641 3.5022 22 1 -0.2865 -15.4274 4.6697 23 1 -0.2144 -15.3040 2.2486 24 1 1.8319 -15.6321 3.5073 25 6 2.8366 -10.6791 5.3354 26 6 3.0813 -9.3378 5.3629 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 2.0699 -2.6550 0.3003 37 1 0.5490 -2.2724 1.1421 38 1 1.9757 -4.3468 4.6620 39 1 3.4964 -4.7297 3.8201 40 1 2.8737 -6.6877 5.5977 41 1 0.2968 -8.2237 3.7685 42 1 -0.1699 -10.6218 3.7147 43 1 -0.1671 -12.7337 1.8841 44 1 3.5442 -11.3677 5.7729 45 1 3.9842 -8.9644 5.8231 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007838297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:53 Heat of formation + Delta-G solvation = -119.582281 kcal Electronic energy + Delta-G solvation = -25250.212036 eV Core-core repulsion = 21424.962266 eV Total energy + Delta-G solvation = -3825.249770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.78604 -39.57563 -37.56727 -37.09593 -36.26783 -34.48113 -32.97357 -31.66605 -29.85872 -29.42730 -28.18578 -27.53998 -25.33172 -24.52541 -21.68172 -21.20897 -20.87007 -20.24814 -19.71292 -17.87152 -17.46532 -17.29633 -17.01663 -16.08898 -15.99093 -15.70312 -15.17097 -14.89635 -14.30312 -14.19047 -13.93855 -13.84027 -13.40442 -13.07402 -12.80961 -12.65808 -12.61229 -12.46537 -12.17279 -12.09937 -11.76697 -11.72301 -11.49482 -11.23493 -11.16519 -11.03542 -11.00244 -10.96065 -10.84617 -10.68932 -10.52464 -9.97741 -9.92254 -9.51591 -9.04882 -8.79678 -7.55681 -6.93628 -6.61276 -4.35701 2.01359 2.24980 2.50052 2.96640 3.06644 3.09530 3.11680 3.27959 3.66288 3.97556 4.36548 4.41246 4.48957 4.68194 4.70187 4.81473 4.87748 4.99163 5.02118 5.06006 5.19242 5.27368 5.31884 5.43688 5.52296 5.63443 5.63577 5.67557 5.81200 5.95094 6.00975 6.09908 6.22365 6.35352 6.71687 6.93388 7.01634 7.16687 7.25892 7.52602 7.60886 7.64244 7.91648 8.06680 8.12169 8.30088 8.61820 8.66771 8.91064 8.97834 10.29601 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025947 B = 0.001962 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.851660 B =14266.318230 C =15147.513191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.104 4.104 5 C -0.115 4.115 6 C 0.461 3.539 7 O -0.513 6.513 8 O -0.330 6.330 9 C 0.052 3.948 10 C 0.497 3.503 11 O -0.504 6.504 12 N -0.647 5.647 13 C 0.001 3.999 14 C -0.092 4.092 15 C -0.145 4.145 16 C 0.101 3.899 17 C -0.463 4.463 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.806 5.806 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.204 4.204 26 C -0.110 4.110 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.397 0.603 41 H 0.108 0.892 42 H 0.131 0.869 43 H 0.279 0.721 44 H 0.097 0.903 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 20.937 -2.774 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.142 4.142 5 C -0.153 4.153 6 C 0.305 3.695 7 O -0.401 6.401 8 O -0.245 6.245 9 C -0.026 4.026 10 C 0.282 3.718 11 O -0.379 6.379 12 N -0.292 5.292 13 C -0.091 4.091 14 C -0.112 4.112 15 C -0.165 4.165 16 C 0.099 3.901 17 C -0.493 4.493 18 H 0.094 0.906 19 C -0.147 4.147 20 N -0.433 5.433 21 Si 0.741 3.259 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.224 4.224 26 C -0.130 4.130 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.230 0.770 41 H 0.126 0.874 42 H 0.149 0.851 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.695 20.750 -3.431 21.100 hybrid contribution 0.366 -0.630 0.376 0.820 sum 2.061 20.120 -3.055 20.455 Atomic orbital electron populations 1.21947 0.95056 1.02139 1.01952 1.21136 0.96106 0.96424 0.97966 1.21825 1.01070 0.95697 1.01854 1.21522 1.02061 0.91947 0.98639 1.21511 1.04059 0.95548 0.94157 1.23931 0.76779 0.80386 0.88441 1.90660 1.38291 1.67024 1.44167 1.86584 1.71608 1.24330 1.41963 1.22713 1.00836 0.92145 0.86896 1.19954 0.81675 0.86993 0.83166 1.90765 1.37656 1.74192 1.35255 1.42773 1.59524 1.07450 1.19467 1.17238 0.98524 0.80115 1.13188 1.20646 0.94961 0.96390 0.99220 1.21304 1.00859 0.90751 1.03546 1.17741 0.89504 0.93596 0.89276 1.19463 1.32913 0.93131 1.03818 0.90606 1.25908 0.93058 1.00590 0.95133 1.69779 1.28673 1.36961 1.07870 0.86240 0.79250 0.82103 0.78283 1.19036 1.20404 1.19121 1.20691 0.98641 0.93458 1.09612 1.20073 0.96680 0.93500 1.02789 0.92584 0.92219 0.92538 0.90836 0.92593 0.92591 0.92582 0.90884 0.90901 0.87394 0.87253 0.88449 0.88354 0.76960 0.87434 0.85133 0.90944 0.88435 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.95 37.16 0.33 -0.56 16 2 C -0.10 -0.59 2.92 -90.62 -0.26 -0.86 16 3 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 4 C -0.10 -0.78 3.97 -26.73 -0.11 -0.88 16 5 C -0.12 -0.95 5.57 -27.89 -0.16 -1.11 16 6 C 0.46 5.53 7.96 36.00 0.29 5.81 16 7 O -0.51 -7.03 15.73 -18.75 -0.29 -7.32 16 8 O -0.33 -4.70 9.75 -45.91 -0.45 -5.15 16 9 C 0.05 0.68 5.95 36.00 0.21 0.90 16 10 C 0.50 8.76 7.74 -10.99 -0.09 8.68 16 11 O -0.50 -11.34 13.92 -14.11 -0.20 -11.53 16 12 N -0.65 -11.05 5.30 -9.74 -0.05 -11.10 16 13 C 0.00 0.02 6.31 -83.57 -0.53 -0.50 16 14 C -0.09 -2.29 8.61 -39.79 -0.34 -2.63 16 15 C -0.14 -3.86 8.61 -39.26 -0.34 -4.20 16 16 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 17 C -0.46 -12.27 9.02 -37.85 -0.34 -12.61 16 18 H 0.08 1.91 7.85 -52.49 -0.41 1.49 16 19 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 20 N -0.81 -21.45 10.61 55.55 0.59 -20.86 16 21 Si 0.92 19.03 29.56 -169.99 -5.03 14.00 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 C -0.20 -4.87 9.74 -39.26 -0.38 -5.26 16 26 C -0.11 -2.37 9.90 -39.79 -0.39 -2.76 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.34 6.56 -51.92 -0.34 0.00 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.07 0.59 8.10 -51.92 -0.42 0.17 16 36 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.11 0.78 6.56 -51.93 -0.34 0.44 16 38 H 0.10 1.06 8.13 -51.93 -0.42 0.64 16 39 H 0.10 1.11 8.13 -51.93 -0.42 0.68 16 40 H 0.40 5.03 8.82 -40.82 -0.36 4.67 16 41 H 0.11 2.68 6.22 -52.49 -0.33 2.36 16 42 H 0.13 3.65 6.15 -52.48 -0.32 3.33 16 43 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 44 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 45 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 377.65 15.07 5.69 5.69 Total: -1.00 -32.23 377.65 -8.91 -41.15 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.73 Total: 7.83 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.45 Total: -12.70 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.54 Total: -31.96 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.94 Total: -24.01 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.23 -8.91 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007838297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.435 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds