Wall clock time and date at job start Tue Mar 31 2020 12:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46896 * 2 1 4 4 C 1.53003 * 109.46807 * 120.00005 * 2 1 3 5 5 C 1.52996 * 109.47536 * 65.00307 * 4 2 1 6 6 C 1.50692 * 109.47075 * 179.97438 * 5 4 2 7 7 O 1.20821 * 120.00466 * 0.02562 * 6 5 4 8 8 O 1.34232 * 119.99945 * 179.97438 * 6 5 4 9 9 C 1.45200 * 117.00456 * 180.02562 * 8 6 5 10 10 C 1.50693 * 109.47507 * 180.02562 * 9 8 6 11 11 O 1.21284 * 119.99937 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00055 * 179.97438 * 10 9 8 13 13 C 1.39234 * 119.99787 * 184.28933 * 12 10 9 14 14 C 1.39480 * 119.83810 * 324.71162 * 13 12 10 15 15 C 1.36373 * 120.17151 * 180.29688 * 14 13 12 16 16 C 1.40869 * 119.82638 * 359.48095 * 15 14 13 17 17 C 1.41149 * 120.16615 * 180.24677 * 16 15 14 18 18 H 1.08002 * 120.00564 * 215.01718 * 17 16 15 19 19 C 1.39907 * 119.99949 * 35.01923 * 17 16 15 20 20 N 1.30873 * 119.99679 * 355.54737 * 19 17 16 21 21 Si 1.86795 * 120.00282 * 175.54331 * 19 17 16 22 22 H 1.48497 * 109.47333 * 59.99949 * 21 19 17 23 23 H 1.48503 * 109.47069 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47361 * 299.99743 * 21 19 17 25 25 C 1.40878 * 119.67448 * 0.51928 * 16 15 14 26 26 C 1.36371 * 119.82161 * 359.73123 * 25 16 15 27 27 H 1.08997 * 109.47183 * 60.00687 * 1 2 3 28 28 H 1.09008 * 109.46846 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47297 * 300.00152 * 1 2 3 30 30 H 1.08998 * 109.47297 * 239.99848 * 2 1 3 31 31 H 1.09005 * 109.47179 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46914 * 299.99706 * 3 2 1 33 33 H 1.08998 * 109.47271 * 59.99833 * 3 2 1 34 34 H 1.08998 * 109.47066 * 304.99294 * 4 2 1 35 35 H 1.09008 * 109.46569 * 185.00132 * 4 2 1 36 36 H 1.09006 * 109.47157 * 59.99357 * 5 4 2 37 37 H 1.09001 * 109.46719 * 300.00111 * 5 4 2 38 38 H 1.09005 * 109.46837 * 60.00183 * 9 8 6 39 39 H 1.09001 * 109.46863 * 300.01059 * 9 8 6 40 40 H 0.96994 * 119.99721 * 4.29555 * 12 10 9 41 41 H 1.07997 * 119.91386 * 0.02562 * 14 13 12 42 42 H 1.08003 * 120.08733 * 179.70254 * 15 14 13 43 43 H 0.97006 * 120.00240 * 180.02562 * 20 19 17 44 44 H 1.07991 * 120.08734 * 179.71251 * 25 16 15 45 45 H 1.08005 * 119.91371 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6353 -2.1955 1.1881 6 6 2.1381 -2.9059 2.4182 7 8 2.7563 -2.2957 3.2580 8 8 1.8983 -4.2165 2.5815 9 6 2.4119 -4.8351 3.7906 10 6 2.0493 -6.2977 3.7997 11 8 1.4202 -6.7722 2.8776 12 7 2.4248 -7.0787 4.8319 13 6 2.1682 -8.4468 4.7991 14 6 0.9991 -8.9195 4.2030 15 6 0.7381 -10.2577 4.1724 16 6 1.6580 -11.1640 4.7351 17 6 1.3975 -12.5509 4.7027 18 1 1.7058 -13.1777 5.5264 19 6 0.7400 -13.1137 3.6035 20 7 0.2891 -12.3436 2.6461 21 14 0.5056 -14.9641 3.5022 22 1 -0.2865 -15.4274 4.6697 23 1 -0.2144 -15.3040 2.2486 24 1 1.8319 -15.6321 3.5073 25 6 2.8366 -10.6791 5.3354 26 6 3.0813 -9.3378 5.3629 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 2.0699 -2.6550 0.3003 37 1 0.5490 -2.2724 1.1421 38 1 1.9757 -4.3468 4.6620 39 1 3.4964 -4.7297 3.8201 40 1 2.8737 -6.6877 5.5977 41 1 0.2968 -8.2237 3.7685 42 1 -0.1699 -10.6218 3.7147 43 1 -0.1671 -12.7337 1.8841 44 1 3.5442 -11.3677 5.7729 45 1 3.9842 -8.9644 5.8231 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007838297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:52 Heat of formation + Delta-G solvation = -136.884936 kcal Electronic energy + Delta-G solvation = -25250.962335 eV Core-core repulsion = 21424.962266 eV Total energy + Delta-G solvation = -3826.000069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.84950 -41.04261 -39.11897 -38.02653 -37.18164 -36.20167 -34.75850 -32.37421 -31.55439 -31.18943 -29.60600 -27.98249 -26.74299 -25.64212 -23.37207 -22.88461 -21.88747 -21.32141 -20.78948 -19.24325 -18.86253 -18.83728 -17.99781 -17.59987 -17.23026 -16.86785 -16.50195 -15.92237 -15.75975 -15.34249 -15.05851 -14.78430 -14.66956 -14.44324 -14.13157 -13.98018 -13.82535 -13.57093 -13.41789 -13.32799 -13.05199 -12.83899 -12.69797 -12.67713 -12.32241 -12.28460 -11.92334 -11.80322 -11.79191 -11.72226 -11.61301 -11.50231 -11.45395 -11.23094 -10.82005 -10.53353 -9.46630 -8.78463 -8.50182 -6.33925 0.75565 1.09416 1.12439 1.24982 1.39209 1.42768 1.51907 1.68294 2.23594 2.41777 2.80860 3.54872 3.64063 3.69816 3.82124 3.94067 3.99260 4.03501 4.16314 4.29800 4.43121 4.47377 4.50416 4.59124 4.80889 4.84452 4.93489 4.96929 5.06105 5.10602 5.13553 5.14022 5.15521 5.25432 5.32808 5.35456 5.39323 5.49687 5.53468 5.70124 5.84282 6.05019 6.13297 6.33752 6.54661 6.66335 6.70036 6.95168 7.00396 7.27696 8.42566 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025947 B = 0.001962 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.851660 B =14266.318230 C =15147.513191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.098 4.098 5 C -0.113 4.113 6 C 0.463 3.537 7 O -0.531 6.531 8 O -0.352 6.352 9 C 0.060 3.940 10 C 0.498 3.502 11 O -0.558 6.558 12 N -0.635 5.635 13 C 0.016 3.984 14 C -0.108 4.108 15 C -0.169 4.169 16 C 0.066 3.934 17 C -0.496 4.496 18 H 0.081 0.919 19 C 0.022 3.978 20 N -0.846 5.846 21 Si 0.991 3.009 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.209 4.209 26 C -0.103 4.103 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.423 0.577 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.283 0.717 44 H 0.114 0.886 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 22.142 -2.244 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.136 4.136 5 C -0.150 4.150 6 C 0.308 3.692 7 O -0.421 6.421 8 O -0.268 6.268 9 C -0.017 4.017 10 C 0.285 3.715 11 O -0.436 6.436 12 N -0.282 5.282 13 C -0.077 4.077 14 C -0.128 4.128 15 C -0.190 4.190 16 C 0.064 3.936 17 C -0.527 4.527 18 H 0.099 0.901 19 C -0.190 4.190 20 N -0.474 5.474 21 Si 0.812 3.188 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.184 1.184 25 C -0.229 4.229 26 C -0.123 4.123 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.261 0.739 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.093 0.907 44 H 0.132 0.868 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.222 22.006 -2.855 22.423 hybrid contribution -0.054 -0.798 0.242 0.835 sum 3.168 21.208 -2.613 21.602 Atomic orbital electron populations 1.21960 0.94826 1.02260 1.02154 1.21119 0.96254 0.96529 0.97400 1.21830 1.01084 0.95463 1.02106 1.21482 1.01590 0.91479 0.99057 1.21670 1.04817 0.95529 0.92960 1.24569 0.76149 0.79455 0.89069 1.90649 1.39288 1.67067 1.45073 1.86590 1.72140 1.25613 1.42468 1.22690 1.02493 0.88699 0.87817 1.20750 0.79972 0.88758 0.82019 1.90756 1.39947 1.75601 1.37299 1.42629 1.59337 1.05580 1.20670 1.17301 0.97020 0.82637 1.10751 1.20670 0.96385 0.95528 1.00196 1.21171 1.00721 0.91902 1.05163 1.18088 0.90804 0.94043 0.90654 1.19764 1.34611 0.93562 1.04765 0.90099 1.26864 0.92204 1.05583 0.94310 1.69905 1.29768 1.39070 1.08629 0.85115 0.79425 0.75731 0.78551 1.18126 1.19833 1.18361 1.20969 0.97926 0.95098 1.08931 1.20454 0.97803 0.92413 1.01625 0.92013 0.92141 0.92760 0.90178 0.92606 0.91887 0.92811 0.91715 0.91555 0.85923 0.86000 0.85626 0.85692 0.73859 0.88488 0.87740 0.90694 0.86781 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.95 71.98 0.64 -0.90 16 2 C -0.09 -0.99 2.92 -10.79 -0.03 -1.02 16 3 C -0.15 -1.45 9.19 71.98 0.66 -0.79 16 4 C -0.10 -1.33 3.97 30.59 0.12 -1.21 16 5 C -0.11 -1.67 5.57 29.84 0.17 -1.50 16 6 C 0.46 10.28 7.96 71.23 0.57 10.85 16 7 O -0.53 -13.52 15.73 21.98 0.35 -13.18 16 8 O -0.35 -9.48 9.75 -45.09 -0.44 -9.92 16 9 C 0.06 1.42 5.95 71.23 0.42 1.84 16 10 C 0.50 16.78 7.74 87.65 0.68 17.46 16 11 O -0.56 -25.29 13.92 15.76 0.22 -25.07 16 12 N -0.63 -20.13 5.30 -303.11 -1.61 -21.74 16 13 C 0.02 0.69 6.31 38.57 0.24 0.93 16 14 C -0.11 -5.49 8.61 22.13 0.19 -5.30 16 15 C -0.17 -9.51 8.61 22.48 0.19 -9.32 16 16 C 0.07 3.64 5.55 -21.27 -0.12 3.53 16 17 C -0.50 -27.10 9.02 23.39 0.21 -26.89 16 18 H 0.08 4.15 7.85 -2.91 -0.02 4.12 16 19 C 0.02 1.15 5.42 85.24 0.46 1.61 16 20 N -0.85 -47.11 10.61 21.82 0.23 -46.88 16 21 Si 0.99 39.62 29.56 68.60 2.03 41.65 16 22 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 25 C -0.21 -9.85 9.74 22.48 0.22 -9.63 16 26 C -0.10 -4.18 9.90 22.13 0.22 -3.96 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.59 6.56 -2.38 -0.02 0.58 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 35 H 0.07 0.99 8.10 -2.38 -0.02 0.97 16 36 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.12 1.53 6.56 -2.39 -0.02 1.51 16 38 H 0.13 2.31 8.13 -2.38 -0.02 2.29 16 39 H 0.13 2.35 8.13 -2.39 -0.02 2.33 16 40 H 0.42 9.05 8.82 -92.71 -0.82 8.23 16 41 H 0.10 5.07 6.22 -2.91 -0.02 5.06 16 42 H 0.10 6.30 6.15 -2.91 -0.02 6.28 16 43 H 0.28 14.47 8.30 -92.70 -0.77 13.70 16 44 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 45 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -73.46 377.65 5.81 -67.65 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.18 Total: 31.80 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 4.85 Total: -24.30 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -1.38 Total: -68.62 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: 0.13 Total: -48.17 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -73.46 5.81 -67.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007838297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.237 kcal (2) G-P(sol) polarization free energy of solvation -73.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds