Wall clock time and date at job start Tue Mar 31 2020 12:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47174 * 2 1 4 4 C 1.53001 * 109.47189 * 120.00234 * 2 1 3 5 5 C 1.50702 * 109.47156 * 64.99371 * 4 2 1 6 6 O 1.21274 * 120.00072 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99834 * 180.02562 * 5 4 2 8 8 C 1.39253 * 119.99796 * 185.28125 * 7 5 4 9 9 C 1.38850 * 120.17194 * 34.93553 * 8 7 5 10 10 C 1.38017 * 120.07581 * 180.02562 * 9 8 7 11 11 C 1.38575 * 120.42052 * 359.97438 * 10 9 8 12 12 C 1.37776 * 120.33381 * 0.02562 * 11 10 9 13 13 C 1.39743 * 119.92096 * 359.97438 * 12 11 10 14 14 C 1.47380 * 120.20841 * 179.97438 * 13 12 11 15 15 O 1.21511 * 120.00372 * 175.04409 * 14 13 12 16 16 O 1.34757 * 119.99830 * 355.04611 * 14 13 12 17 17 C 1.45200 * 117.00078 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47415 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47308 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99947 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00186 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99602 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00059 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47079 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.46956 * 119.99616 * 23 21 19 26 26 H 1.48498 * 109.46866 * 239.99787 * 23 21 19 27 27 H 1.09003 * 109.46884 * 59.99906 * 1 2 3 28 28 H 1.09001 * 109.47304 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46682 * 300.00025 * 1 2 3 30 30 H 1.09003 * 109.47164 * 239.99824 * 2 1 3 31 31 H 1.09006 * 109.47317 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47292 * 299.99845 * 3 2 1 33 33 H 1.09000 * 109.47336 * 60.00376 * 3 2 1 34 34 H 1.09005 * 109.46815 * 305.00137 * 4 2 1 35 35 H 1.08997 * 109.47413 * 185.00158 * 4 2 1 36 36 H 0.97004 * 120.00426 * 5.27815 * 7 5 4 37 37 H 1.08005 * 119.96045 * 0.30040 * 9 8 7 38 38 H 1.08007 * 119.78871 * 179.97438 * 10 9 8 39 39 H 1.07998 * 119.83224 * 179.97438 * 11 10 9 40 40 H 1.08007 * 120.03655 * 180.02562 * 12 11 10 41 41 H 1.09001 * 109.47289 * 300.00216 * 17 16 14 42 42 H 1.08999 * 109.47088 * 59.99727 * 17 16 14 43 43 H 1.08996 * 109.46880 * 299.99974 * 18 17 16 44 44 H 1.09006 * 109.46543 * 59.99818 * 18 17 16 45 45 H 0.97001 * 119.99817 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1889 6 8 1.0116 -2.5903 0.2400 7 7 1.9844 -3.0085 2.1895 8 6 1.7131 -4.3702 2.0837 9 6 1.7907 -5.0035 0.8505 10 6 1.5209 -6.3532 0.7478 11 6 1.1717 -7.0863 1.8707 12 6 1.0895 -6.4752 3.1028 13 6 1.3597 -5.1095 3.2229 14 6 1.2732 -4.4493 4.5377 15 8 1.5956 -3.2836 4.6547 16 8 0.8364 -5.1384 5.6102 17 6 0.7776 -4.4245 6.8733 18 6 0.2614 -5.3629 7.9660 19 6 0.1998 -4.6218 9.2767 20 1 0.4993 -3.5853 9.3256 21 6 -0.2379 -5.2672 10.4137 22 7 -0.6021 -6.5295 10.3542 23 14 -0.3136 -4.3487 12.0386 24 1 0.1474 -2.9513 11.8392 25 1 -1.7118 -4.3426 12.5390 26 1 0.5639 -5.0224 13.0292 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2952 36 1 2.4204 -2.6611 2.9833 37 1 2.0669 -4.4403 -0.0287 38 1 1.5823 -6.8410 -0.2138 39 1 0.9621 -8.1418 1.7794 40 1 0.8172 -7.0513 3.9749 41 1 1.7744 -4.0716 7.1379 42 1 0.1041 -3.5728 6.7782 43 1 -0.7354 -5.7153 7.7011 44 1 0.9347 -6.2148 8.0611 45 1 -0.9104 -6.9836 11.1541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044951125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:36 Heat of formation + Delta-G solvation = -117.097257 kcal Electronic energy + Delta-G solvation = -26151.795048 eV Core-core repulsion = 22326.653037 eV Total energy + Delta-G solvation = -3825.142011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.09828 -39.85254 -38.51925 -36.33700 -35.91876 -34.72240 -33.39682 -31.61565 -30.40790 -30.14585 -28.08489 -27.32163 -25.41508 -23.93776 -23.25733 -21.34394 -20.87150 -20.75975 -19.96334 -17.90815 -17.63395 -17.22303 -16.62433 -16.20083 -16.00497 -15.89792 -15.14531 -14.87891 -14.73739 -14.52579 -14.20922 -13.94168 -13.83985 -13.53785 -12.90860 -12.77192 -12.59244 -12.44688 -12.40280 -12.19718 -12.10551 -11.70404 -11.38153 -11.31050 -11.13835 -11.08878 -10.94732 -10.82749 -10.75550 -10.62442 -10.28432 -9.88927 -9.73407 -9.66090 -9.32885 -9.12959 -8.48391 -8.31940 -6.14127 -4.18618 0.61733 1.17457 2.40826 2.68369 2.90144 3.05448 3.24999 3.32744 3.37433 3.73177 4.35657 4.38722 4.50327 4.63219 4.69603 4.82671 4.93852 4.98843 5.21811 5.22721 5.23020 5.26852 5.30810 5.36613 5.38098 5.45525 5.65744 5.72170 5.80484 5.87589 5.99133 6.02556 6.05605 6.09122 6.11001 6.19933 6.29852 6.36212 6.57111 6.77084 6.81053 7.29674 7.50667 7.57349 7.81368 7.93178 8.07671 8.19816 8.86989 9.46054 10.97412 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.002765 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.492521 B =10125.095024 C =11924.658753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.080 4.080 3 C -0.148 4.148 4 C -0.138 4.138 5 C 0.514 3.486 6 O -0.521 6.521 7 N -0.665 5.665 8 C 0.212 3.788 9 C -0.140 4.140 10 C -0.068 4.068 11 C -0.152 4.152 12 C -0.039 4.039 13 C -0.156 4.156 14 C 0.510 3.490 15 O -0.527 6.527 16 O -0.347 6.347 17 C 0.076 3.924 18 C 0.024 3.976 19 C -0.526 4.526 20 H 0.060 0.940 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.425 0.575 37 H 0.139 0.861 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.146 0.854 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.780 6.776 -22.382 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.099 4.099 3 C -0.206 4.206 4 C -0.177 4.177 5 C 0.303 3.697 6 O -0.397 6.397 7 N -0.316 5.316 8 C 0.115 3.885 9 C -0.160 4.160 10 C -0.087 4.087 11 C -0.171 4.171 12 C -0.058 4.058 13 C -0.160 4.160 14 C 0.357 3.643 15 O -0.419 6.419 16 O -0.263 6.263 17 C 0.004 3.996 18 C -0.013 4.013 19 C -0.564 4.564 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.269 0.731 37 H 0.157 0.843 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.375 6.774 -22.830 24.653 hybrid contribution 0.119 0.674 1.537 1.682 sum 6.494 7.448 -21.294 23.475 Atomic orbital electron populations 1.21980 0.94620 1.03458 1.01214 1.20869 0.96753 0.95418 0.96811 1.21866 1.00878 0.95694 1.02143 1.21812 1.03200 0.91097 1.01632 1.20991 0.78335 0.88707 0.81639 1.90672 1.37900 1.77940 1.33140 1.43995 1.59416 1.05269 1.22900 1.17674 0.94379 0.83418 0.93003 1.21041 1.03606 0.94811 0.96523 1.21266 0.95224 0.93289 0.98878 1.21139 1.03031 1.00676 0.92210 1.21446 0.93086 0.92503 0.98769 1.19101 1.11020 0.95420 0.90479 1.20936 0.73736 0.84457 0.85208 1.90585 1.47668 1.17724 1.85935 1.86592 1.75813 1.45080 1.18804 1.23703 1.01204 0.96495 0.78233 1.19183 0.97452 0.94719 0.89937 1.20996 1.45086 0.97811 0.92549 0.92209 1.24986 0.94951 0.94935 0.99289 1.69980 1.43581 1.09951 1.29249 0.86416 0.77809 0.79934 0.83162 1.19588 1.20805 1.20810 0.92875 0.90752 0.93162 0.90404 0.92635 0.92330 0.92465 0.88221 0.88439 0.73107 0.84284 0.85184 0.84996 0.83624 0.92125 0.92186 0.95301 0.95288 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.93 37.16 0.33 -1.16 16 2 C -0.08 -0.67 2.57 -90.62 -0.23 -0.90 16 3 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 4 C -0.14 -1.18 5.18 -27.88 -0.14 -1.33 16 5 C 0.51 6.12 7.27 -10.99 -0.08 6.04 16 6 O -0.52 -7.30 11.76 5.56 0.07 -7.24 16 7 N -0.67 -8.46 4.69 -9.68 -0.05 -8.51 16 8 C 0.21 2.91 6.25 -83.48 -0.52 2.39 16 9 C -0.14 -1.68 8.63 -39.44 -0.34 -2.02 16 10 C -0.07 -0.68 10.03 -39.54 -0.40 -1.08 16 11 C -0.15 -1.57 10.02 -39.63 -0.40 -1.97 16 12 C -0.04 -0.51 9.61 -39.19 -0.38 -0.88 16 13 C -0.16 -2.32 5.89 -104.83 -0.62 -2.94 16 14 C 0.51 8.99 7.88 34.45 0.27 9.26 16 15 O -0.53 -9.58 13.68 -19.27 -0.26 -9.84 16 16 O -0.35 -6.84 9.48 -40.65 -0.39 -7.22 16 17 C 0.08 1.65 5.41 37.16 0.20 1.85 16 18 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 19 C -0.53 -14.59 9.11 -34.44 -0.31 -14.90 16 20 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 23 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.89 5.95 -51.93 -0.31 0.58 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.71 7.95 -51.93 -0.41 0.29 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.43 5.32 6.31 -40.82 -0.26 5.06 16 37 H 0.14 1.64 6.54 -52.48 -0.34 1.29 16 38 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.15 1.83 7.62 -52.48 -0.40 1.43 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 376.65 15.07 5.68 5.68 Total: -1.00 -31.42 376.65 -8.52 -39.94 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.76 Total: 2.59 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.52 Total: -6.21 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.69 Total: -33.85 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.58 Total: -24.30 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.42 -8.52 -39.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044951125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.156 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds