Wall clock time and date at job start Tue Mar 31 2020 12:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47174 * 2 1 4 4 C 1.53001 * 109.47189 * 120.00234 * 2 1 3 5 5 C 1.50702 * 109.47156 * 64.99371 * 4 2 1 6 6 O 1.21274 * 120.00072 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99834 * 180.02562 * 5 4 2 8 8 C 1.39253 * 119.99796 * 185.28125 * 7 5 4 9 9 C 1.38850 * 120.17194 * 34.93553 * 8 7 5 10 10 C 1.38017 * 120.07581 * 180.02562 * 9 8 7 11 11 C 1.38575 * 120.42052 * 359.97438 * 10 9 8 12 12 C 1.37776 * 120.33381 * 0.02562 * 11 10 9 13 13 C 1.39743 * 119.92096 * 359.97438 * 12 11 10 14 14 C 1.47380 * 120.20841 * 179.97438 * 13 12 11 15 15 O 1.21511 * 120.00372 * 175.04409 * 14 13 12 16 16 O 1.34757 * 119.99830 * 355.04611 * 14 13 12 17 17 C 1.45200 * 117.00078 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47415 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47308 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99947 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00186 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99602 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00059 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47079 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.46956 * 119.99616 * 23 21 19 26 26 H 1.48498 * 109.46866 * 239.99787 * 23 21 19 27 27 H 1.09003 * 109.46884 * 59.99906 * 1 2 3 28 28 H 1.09001 * 109.47304 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46682 * 300.00025 * 1 2 3 30 30 H 1.09003 * 109.47164 * 239.99824 * 2 1 3 31 31 H 1.09006 * 109.47317 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47292 * 299.99845 * 3 2 1 33 33 H 1.09000 * 109.47336 * 60.00376 * 3 2 1 34 34 H 1.09005 * 109.46815 * 305.00137 * 4 2 1 35 35 H 1.08997 * 109.47413 * 185.00158 * 4 2 1 36 36 H 0.97004 * 120.00426 * 5.27815 * 7 5 4 37 37 H 1.08005 * 119.96045 * 0.30040 * 9 8 7 38 38 H 1.08007 * 119.78871 * 179.97438 * 10 9 8 39 39 H 1.07998 * 119.83224 * 179.97438 * 11 10 9 40 40 H 1.08007 * 120.03655 * 180.02562 * 12 11 10 41 41 H 1.09001 * 109.47289 * 300.00216 * 17 16 14 42 42 H 1.08999 * 109.47088 * 59.99727 * 17 16 14 43 43 H 1.08996 * 109.46880 * 299.99974 * 18 17 16 44 44 H 1.09006 * 109.46543 * 59.99818 * 18 17 16 45 45 H 0.97001 * 119.99817 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1889 6 8 1.0116 -2.5903 0.2400 7 7 1.9844 -3.0085 2.1895 8 6 1.7131 -4.3702 2.0837 9 6 1.7907 -5.0035 0.8505 10 6 1.5209 -6.3532 0.7478 11 6 1.1717 -7.0863 1.8707 12 6 1.0895 -6.4752 3.1028 13 6 1.3597 -5.1095 3.2229 14 6 1.2732 -4.4493 4.5377 15 8 1.5956 -3.2836 4.6547 16 8 0.8364 -5.1384 5.6102 17 6 0.7776 -4.4245 6.8733 18 6 0.2614 -5.3629 7.9660 19 6 0.1998 -4.6218 9.2767 20 1 0.4993 -3.5853 9.3256 21 6 -0.2379 -5.2672 10.4137 22 7 -0.6021 -6.5295 10.3542 23 14 -0.3136 -4.3487 12.0386 24 1 0.1474 -2.9513 11.8392 25 1 -1.7118 -4.3426 12.5390 26 1 0.5639 -5.0224 13.0292 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2952 36 1 2.4204 -2.6611 2.9833 37 1 2.0669 -4.4403 -0.0287 38 1 1.5823 -6.8410 -0.2138 39 1 0.9621 -8.1418 1.7794 40 1 0.8172 -7.0513 3.9749 41 1 1.7744 -4.0716 7.1379 42 1 0.1041 -3.5728 6.7782 43 1 -0.7354 -5.7153 7.7011 44 1 0.9347 -6.2148 8.0611 45 1 -0.9104 -6.9836 11.1541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044951125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:35 Heat of formation + Delta-G solvation = -133.446860 kcal Electronic energy + Delta-G solvation = -26152.504020 eV Core-core repulsion = 22326.653037 eV Total energy + Delta-G solvation = -3825.850983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.17539 -41.11011 -39.55028 -37.77035 -36.70694 -35.74609 -35.43214 -32.87311 -31.94022 -31.29003 -28.87608 -27.97641 -27.25554 -25.24978 -24.22497 -23.01704 -22.18272 -21.77350 -20.77110 -19.25183 -18.69569 -18.36336 -18.09475 -17.73526 -17.56820 -16.86679 -16.55124 -16.03111 -15.75146 -15.68117 -15.18895 -15.09234 -14.80413 -14.67762 -14.41050 -14.31411 -13.86810 -13.34316 -13.21090 -13.16456 -13.06552 -12.98560 -12.79990 -12.64019 -12.62074 -12.54434 -12.12478 -11.90501 -11.79613 -11.66440 -11.59133 -11.52370 -11.46176 -11.29696 -10.80579 -10.63076 -10.11993 -9.28697 -8.28246 -6.41353 -0.44112 0.23474 1.40312 1.41237 1.42827 1.49602 1.54025 1.65250 1.99093 2.39162 2.73685 3.06494 3.53943 3.59885 3.77823 3.82102 3.97979 4.05158 4.20041 4.20381 4.28389 4.32739 4.35794 4.40395 4.62858 4.65976 4.66892 4.71376 4.82875 4.86900 5.02127 5.05952 5.09761 5.18074 5.23836 5.27425 5.34633 5.41594 5.44682 5.45208 5.47461 5.50940 5.71771 5.86086 6.04739 6.32541 6.59283 6.72588 7.00341 7.28553 8.84620 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.002765 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.492521 B =10125.095024 C =11924.658753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.077 4.077 3 C -0.144 4.144 4 C -0.134 4.134 5 C 0.511 3.489 6 O -0.545 6.545 7 N -0.668 5.668 8 C 0.200 3.800 9 C -0.147 4.147 10 C -0.051 4.051 11 C -0.143 4.143 12 C -0.049 4.049 13 C -0.181 4.181 14 C 0.506 3.494 15 O -0.537 6.537 16 O -0.356 6.356 17 C 0.092 3.908 18 C 0.031 3.969 19 C -0.548 4.548 20 H 0.066 0.934 21 C 0.006 3.994 22 N -0.927 5.927 23 Si 0.973 3.027 24 H -0.261 1.261 25 H -0.276 1.276 26 H -0.275 1.275 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.425 0.575 37 H 0.141 0.859 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.142 0.858 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.005 0.995 44 H 0.008 0.992 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.538 7.472 -23.335 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.096 4.096 3 C -0.201 4.201 4 C -0.173 4.173 5 C 0.301 3.699 6 O -0.422 6.422 7 N -0.318 5.318 8 C 0.102 3.898 9 C -0.167 4.167 10 C -0.070 4.070 11 C -0.161 4.161 12 C -0.067 4.067 13 C -0.185 4.185 14 C 0.354 3.646 15 O -0.430 6.430 16 O -0.273 6.273 17 C 0.019 3.981 18 C -0.006 4.006 19 C -0.586 4.586 20 H 0.084 0.916 21 C -0.193 4.193 22 N -0.566 5.566 23 Si 0.797 3.203 24 H -0.185 1.185 25 H -0.202 1.202 26 H -0.200 1.200 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.123 0.877 35 H 0.141 0.859 36 H 0.268 0.732 37 H 0.159 0.841 38 H 0.186 0.814 39 H 0.183 0.817 40 H 0.159 0.841 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.023 0.977 44 H 0.026 0.974 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.143 7.481 -23.804 25.954 hybrid contribution -0.121 0.381 1.685 1.732 sum 7.022 7.862 -22.119 24.502 Atomic orbital electron populations 1.21955 0.95759 1.01748 1.01722 1.20858 0.95759 0.96645 0.96353 1.21826 1.01627 0.94107 1.02535 1.21899 1.04799 0.88651 1.01958 1.21601 0.77613 0.89757 0.80926 1.90655 1.38953 1.78592 1.33997 1.44093 1.59369 1.05248 1.23098 1.17914 0.94621 0.83942 0.93278 1.21211 1.03903 0.95849 0.95750 1.21720 0.92506 0.92380 1.00379 1.21493 1.01433 1.02188 0.90983 1.21573 0.93333 0.91808 1.00019 1.19047 1.13893 0.96448 0.89113 1.21482 0.73117 0.84539 0.85449 1.90566 1.48218 1.18141 1.86093 1.86569 1.76697 1.45282 1.18704 1.23218 1.01078 0.95231 0.78547 1.18984 0.95735 0.94695 0.91219 1.21386 1.45316 0.98309 0.93598 0.91611 1.25965 0.94248 0.95789 1.03321 1.70100 1.44257 1.11619 1.30605 0.85274 0.78053 0.78880 0.78085 1.18523 1.20163 1.20040 0.92051 0.93466 0.92990 0.91109 0.91416 0.91847 0.92190 0.87661 0.85939 0.73225 0.84092 0.81441 0.81712 0.84061 0.91666 0.92194 0.97662 0.97359 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.93 71.98 0.64 -2.28 16 2 C -0.08 -1.22 2.57 -10.79 -0.03 -1.25 16 3 C -0.14 -1.61 9.19 71.98 0.66 -0.95 16 4 C -0.13 -2.15 5.18 29.85 0.15 -2.00 16 5 C 0.51 12.02 7.27 87.66 0.64 12.66 16 6 O -0.54 -15.29 11.76 -3.01 -0.04 -15.33 16 7 N -0.67 -17.03 4.69 -302.94 -1.42 -18.45 16 8 C 0.20 5.44 6.25 38.62 0.24 5.68 16 9 C -0.15 -3.33 8.63 22.36 0.19 -3.14 16 10 C -0.05 -0.89 10.03 22.30 0.22 -0.66 16 11 C -0.14 -2.60 10.02 22.24 0.22 -2.37 16 12 C -0.05 -1.22 9.61 22.52 0.22 -1.01 16 13 C -0.18 -5.43 5.89 -20.00 -0.12 -5.54 16 14 C 0.51 18.30 7.88 70.23 0.55 18.86 16 15 O -0.54 -19.93 13.68 19.80 0.27 -19.66 16 16 O -0.36 -14.51 9.48 -56.68 -0.54 -15.05 16 17 C 0.09 4.12 5.41 71.98 0.39 4.51 16 18 C 0.03 1.65 5.35 29.85 0.16 1.81 16 19 C -0.55 -30.84 9.11 25.60 0.23 -30.61 16 20 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 21 C 0.01 0.32 5.46 84.65 0.46 0.79 16 22 N -0.93 -55.21 13.29 21.45 0.28 -54.93 16 23 Si 0.97 43.30 29.54 68.60 2.03 45.32 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 1.16 5.95 -2.39 -0.01 1.14 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.22 7.95 -2.39 -0.02 1.20 16 31 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.42 10.72 6.31 -92.71 -0.59 10.13 16 37 H 0.14 3.15 6.54 -2.91 -0.02 3.13 16 38 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 39 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.14 3.60 7.62 -2.91 -0.02 3.58 16 41 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 45 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -69.10 376.65 5.84 -63.25 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.41 Total: 20.35 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 4.85 Total: -5.52 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.14 Total: -73.38 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.30 Total: -50.03 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -69.10 5.84 -63.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044951125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.194 kcal (2) G-P(sol) polarization free energy of solvation -69.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds