Wall clock time and date at job start Tue Mar 31 2020 13:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46693 * 2 1 4 4 C 1.52996 * 109.47029 * 120.00250 * 2 1 3 5 5 N 1.46501 * 109.47424 * 66.93779 * 4 2 1 6 6 C 1.46499 * 119.99482 * 277.51353 * 5 4 2 7 7 C 1.50700 * 109.47387 * 269.99622 * 6 5 4 8 8 H 1.07998 * 119.99670 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00042 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00015 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 120.00224 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47554 * 89.99505 * 11 9 7 13 13 H 1.48501 * 109.47342 * 209.99891 * 11 9 7 14 14 H 1.48504 * 109.46837 * 329.99213 * 11 9 7 15 15 C 1.34771 * 120.00212 * 97.51649 * 5 4 2 16 16 O 1.21580 * 120.00322 * 186.62025 * 15 5 4 17 17 C 1.47611 * 120.00101 * 6.61446 * 15 5 4 18 18 C 1.39703 * 120.10147 * 315.30617 * 17 15 5 19 19 C 1.37715 * 119.96929 * 180.08754 * 18 17 15 20 20 C 1.39013 * 120.27143 * 359.95588 * 19 18 17 21 21 C 1.39264 * 120.04131 * 359.94315 * 20 19 18 22 22 C 1.38287 * 119.96162 * 0.13039 * 21 20 19 23 23 O 1.36149 * 120.75617 * 180.39770 * 21 20 19 24 24 C 1.43171 * 116.68683 * 342.62065 * 23 21 20 25 25 C 1.53464 * 108.22686 * 46.26783 * 24 23 21 26 26 O 1.35971 * 119.24466 * 179.79984 * 20 19 18 27 27 H 1.08990 * 109.47383 * 299.99882 * 1 2 3 28 28 H 1.08996 * 109.47140 * 60.00501 * 1 2 3 29 29 H 1.09002 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47282 * 240.00156 * 2 1 3 31 31 H 1.09006 * 109.47039 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47364 * 299.99365 * 3 2 1 33 33 H 1.08996 * 109.47003 * 60.00378 * 3 2 1 34 34 H 1.09000 * 109.46877 * 306.93143 * 4 2 1 35 35 H 1.09004 * 109.46576 * 186.93996 * 4 2 1 36 36 H 1.08992 * 109.47300 * 30.00253 * 6 5 4 37 37 H 1.09007 * 109.46599 * 150.00039 * 6 5 4 38 38 H 0.97000 * 120.00281 * 180.02562 * 10 9 7 39 39 H 1.08002 * 120.01564 * 0.11970 * 18 17 15 40 40 H 1.08001 * 119.86693 * 179.97438 * 19 18 17 41 41 H 1.08001 * 120.01844 * 180.17009 * 22 21 20 42 42 H 1.09003 * 109.70842 * 286.58008 * 24 23 21 43 43 H 1.09000 * 109.71179 * 165.95346 * 24 23 21 44 44 H 1.09001 * 109.69921 * 180.52679 * 25 24 23 45 45 H 1.08999 * 109.74058 * 59.92775 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6926 -2.1423 1.1687 6 6 0.3553 -2.5927 1.5620 7 6 0.3516 -2.9340 3.0298 8 1 1.2550 -2.8257 3.6116 9 6 -0.8051 -3.3844 3.6300 10 7 -0.8084 -3.6818 4.9111 11 14 -2.3674 -3.5724 2.6235 12 1 -2.4261 -4.9414 2.0514 13 1 -3.5482 -3.3495 3.4961 14 1 -2.3701 -2.5754 1.5230 15 6 2.6034 -3.0350 0.7329 16 8 2.2810 -4.1931 0.5513 17 6 3.9924 -2.6067 0.4758 18 6 4.2428 -1.4191 -0.2160 19 6 5.5397 -1.0230 -0.4559 20 6 6.6033 -1.7999 -0.0114 21 6 6.3605 -2.9838 0.6807 22 6 5.0604 -3.3877 0.9233 23 8 7.3912 -3.7518 1.1296 24 6 8.6756 -3.5095 0.5453 25 6 8.9124 -1.9935 0.5184 26 8 7.8754 -1.3912 -0.2633 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.5789 -0.2841 2.1348 35 1 3.1229 -0.6150 1.3134 36 1 -0.3663 -1.7983 1.3719 37 1 0.0845 -3.4757 0.9830 38 1 -1.6220 -3.9991 5.3332 39 1 3.4196 -0.8116 -0.5622 40 1 5.7314 -0.1048 -0.9913 41 1 4.8710 -4.3042 1.4624 42 1 8.6973 -3.9032 -0.4709 43 1 9.4486 -3.9919 1.1436 44 1 9.8822 -1.7811 0.0684 45 1 8.8839 -1.5983 1.5338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:39 Heat of formation + Delta-G solvation = -91.458314 kcal Electronic energy + Delta-G solvation = -27691.538547 eV Core-core repulsion = 23867.508323 eV Total energy + Delta-G solvation = -3824.030223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.38812 -41.20153 -38.36855 -38.31176 -38.02153 -35.33851 -34.23695 -32.52832 -31.86857 -30.68687 -29.27423 -27.97379 -27.11495 -26.03182 -24.94338 -23.67854 -22.37574 -21.59616 -20.42091 -19.52226 -19.15894 -18.66106 -18.31786 -17.60408 -17.21221 -16.58820 -16.35469 -16.02837 -15.99494 -15.45721 -15.43530 -15.17257 -14.99415 -14.94810 -14.60058 -14.46698 -13.97401 -13.74747 -13.71446 -13.46275 -13.10569 -12.99529 -12.87332 -12.72139 -12.58784 -12.17892 -12.07708 -12.00310 -11.94902 -11.77061 -11.59480 -11.49094 -11.42660 -10.84867 -10.80959 -9.81057 -9.42294 -9.16528 -8.34845 -6.39718 -0.17628 0.17399 1.30965 1.35828 1.43771 1.59493 2.04256 2.08918 2.29955 2.33536 2.62499 2.99441 3.20033 3.48677 3.60200 3.90009 3.93492 3.98081 4.03836 4.04711 4.13738 4.26459 4.30681 4.52208 4.58321 4.60926 4.62882 4.70236 4.72210 4.82594 4.94455 4.97464 4.99125 5.00589 5.09439 5.14233 5.24789 5.29860 5.40133 5.44451 5.45497 5.57241 5.65101 5.82146 6.22495 6.30961 6.58814 6.61395 7.15977 7.30153 8.82331 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015875 B = 0.003952 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.308074 B = 7083.885822 C = 8288.140125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C -0.141 4.141 4 C 0.096 3.904 5 N -0.583 5.583 6 C 0.217 3.783 7 C -0.539 4.539 8 H 0.026 0.974 9 C 0.013 3.987 10 N -0.945 5.945 11 Si 0.943 3.057 12 H -0.277 1.277 13 H -0.273 1.273 14 H -0.234 1.234 15 C 0.546 3.454 16 O -0.592 6.592 17 C -0.131 4.131 18 C -0.088 4.088 19 C -0.107 4.107 20 C 0.071 3.929 21 C 0.040 3.960 22 C -0.087 4.087 23 O -0.328 6.328 24 C 0.010 3.990 25 C 0.015 3.985 26 O -0.308 6.308 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.016 0.984 38 H 0.269 0.731 39 H 0.170 0.830 40 H 0.179 0.821 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.153 0.847 44 H 0.163 0.837 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.362 12.736 -14.423 26.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.131 4.131 3 C -0.198 4.198 4 C -0.026 4.026 5 N -0.311 5.311 6 C 0.096 3.904 7 C -0.578 4.578 8 H 0.044 0.956 9 C -0.185 4.185 10 N -0.585 5.585 11 Si 0.766 3.234 12 H -0.203 1.203 13 H -0.198 1.198 14 H -0.157 1.157 15 C 0.335 3.665 16 O -0.474 6.474 17 C -0.135 4.135 18 C -0.106 4.106 19 C -0.125 4.125 20 C 0.025 3.975 21 C -0.005 4.005 22 C -0.107 4.107 23 O -0.244 6.244 24 C -0.065 4.065 25 C -0.059 4.059 26 O -0.222 6.222 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.187 0.813 40 H 0.196 0.804 41 H 0.132 0.868 42 H 0.101 0.899 43 H 0.171 0.829 44 H 0.180 0.820 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 18.137 12.101 -14.343 26.098 hybrid contribution -0.755 -1.222 0.734 1.613 sum 17.383 10.879 -13.609 24.612 Atomic orbital electron populations 1.22084 0.95448 1.01461 1.02557 1.21658 0.96550 0.97994 0.96882 1.21799 1.02000 0.92945 1.03074 1.22211 1.02006 0.78855 0.99537 1.47827 1.13270 1.08214 1.61833 1.19660 0.81489 0.96143 0.93148 1.21584 0.96800 1.44923 0.94483 0.95583 1.25817 1.02725 0.93950 0.95963 1.70050 1.29800 1.46221 1.12410 0.85780 0.78240 0.79841 0.79571 1.20299 1.19758 1.15657 1.18725 0.85891 0.84893 0.76958 1.90706 1.81328 1.20456 1.54866 1.19548 0.91289 0.98139 1.04516 1.21795 0.98436 0.93793 0.96612 1.20694 0.88526 1.00957 1.02309 1.19227 0.86486 0.92174 0.99659 1.18614 0.88146 0.91801 1.01968 1.20276 0.89499 0.99710 1.01204 1.86332 1.17455 1.58186 1.62399 1.24058 0.83217 0.97590 1.01589 1.24013 0.91714 0.92352 0.97835 1.86261 1.12344 1.63659 1.59911 0.92552 0.90628 0.94074 0.90184 0.90743 0.90579 0.92301 0.91109 0.88350 0.91139 0.96554 0.92236 0.81299 0.80402 0.86839 0.89910 0.82921 0.81975 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 8.20 71.98 0.59 -3.54 16 2 C -0.11 -2.62 2.15 -10.80 -0.02 -2.64 16 3 C -0.14 -2.21 9.11 71.98 0.66 -1.55 16 4 C 0.10 3.05 4.43 86.38 0.38 3.43 16 5 N -0.58 -25.09 2.42 -829.85 -2.01 -27.10 16 6 C 0.22 10.89 3.51 85.63 0.30 11.19 16 7 C -0.54 -32.70 9.94 25.60 0.25 -32.44 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 9 C 0.01 0.81 5.47 84.65 0.46 1.28 16 10 N -0.94 -60.87 13.96 21.45 0.30 -60.57 16 11 Si 0.94 45.13 27.47 68.60 1.88 47.01 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 14 H -0.23 -9.91 6.54 99.48 0.65 -9.26 16 15 C 0.55 24.83 7.27 86.72 0.63 25.46 16 16 O -0.59 -32.52 16.53 -3.97 -0.07 -32.59 16 17 C -0.13 -4.71 5.14 -20.10 -0.10 -4.81 16 18 C -0.09 -2.26 7.38 22.50 0.17 -2.09 16 19 C -0.11 -2.24 9.94 22.33 0.22 -2.01 16 20 C 0.07 1.70 6.51 22.70 0.15 1.84 16 21 C 0.04 1.17 6.48 22.53 0.15 1.32 16 22 C -0.09 -3.15 9.59 22.63 0.22 -2.93 16 23 O -0.33 -8.71 10.42 -83.05 -0.87 -9.57 16 24 C 0.01 0.14 7.26 72.14 0.52 0.67 16 25 C 0.02 0.18 7.26 72.14 0.52 0.70 16 26 O -0.31 -5.83 10.41 -81.03 -0.84 -6.67 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.32 5.26 -2.39 -0.01 1.30 16 30 H 0.08 1.79 6.34 -2.38 -0.02 1.78 16 31 H 0.07 0.92 8.02 -2.38 -0.02 0.91 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 2.43 8.12 -2.39 -0.02 2.41 16 35 H 0.10 2.77 4.98 -2.38 -0.01 2.76 16 36 H 0.07 3.19 4.12 -2.39 -0.01 3.18 16 37 H 0.02 0.89 6.77 -2.38 -0.02 0.87 16 38 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 39 H 0.17 3.63 3.39 -2.91 -0.01 3.62 16 40 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 41 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -84.39 356.18 4.45 -79.94 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.95 Total: 15.71 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 5.10 Total: -6.15 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -1.71 Total: -87.67 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -1.77 Total: -48.83 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -84.39 4.45 -79.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.521 kcal (2) G-P(sol) polarization free energy of solvation -84.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds