Wall clock time and date at job start Tue Mar 31 2020 13:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46842 * 2 1 4 4 C 1.53006 * 109.47063 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46614 * 54.99864 * 4 3 2 6 6 C 1.52996 * 109.46941 * 294.99981 * 4 3 2 7 7 C 1.50698 * 109.47324 * 174.99490 * 4 3 2 8 8 O 1.20829 * 119.99956 * 0.02562 * 7 4 3 9 9 O 1.34225 * 120.00116 * 179.97438 * 7 4 3 10 10 C 1.45202 * 116.99990 * 180.02562 * 9 7 4 11 11 C 1.50696 * 109.46903 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00289 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00062 * 179.97438 * 11 10 9 14 14 C 1.39237 * 119.99872 * 175.70698 * 13 11 10 15 15 C 1.39483 * 119.82991 * 215.01089 * 14 13 11 16 16 C 1.36378 * 120.16838 * 179.76049 * 15 14 13 17 17 C 1.40871 * 119.82343 * 0.52060 * 16 15 14 18 18 C 1.41154 * 120.16039 * 179.71605 * 17 16 15 19 19 H 1.08004 * 120.00199 * 214.80051 * 18 17 16 20 20 C 1.39906 * 120.00289 * 34.80256 * 18 17 16 21 21 N 1.30871 * 120.00004 * 355.56160 * 20 18 17 22 22 Si 1.86801 * 120.00313 * 175.55975 * 20 18 17 23 23 H 1.48499 * 109.46809 * 59.99737 * 22 20 18 24 24 H 1.48492 * 109.47243 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46886 * 300.00368 * 22 20 18 26 26 C 1.40866 * 119.67681 * 359.73728 * 17 16 15 27 27 C 1.36376 * 119.82672 * 359.97438 * 26 17 16 28 28 H 1.09002 * 109.47579 * 60.00107 * 1 2 3 29 29 H 1.08999 * 109.47256 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47396 * 300.00007 * 1 2 3 31 31 H 1.09002 * 109.46859 * 119.99698 * 2 1 3 32 32 H 1.08998 * 109.46854 * 239.99861 * 2 1 3 33 33 H 1.09002 * 109.47147 * 299.99522 * 3 2 1 34 34 H 1.08998 * 109.47510 * 60.00263 * 3 2 1 35 35 H 1.09004 * 109.47214 * 179.97438 * 6 4 3 36 36 H 1.09002 * 109.47364 * 299.99976 * 6 4 3 37 37 H 1.09003 * 109.47547 * 59.99922 * 6 4 3 38 38 H 1.08996 * 109.47049 * 299.99762 * 10 9 7 39 39 H 1.08999 * 109.46940 * 60.00205 * 10 9 7 40 40 H 0.96995 * 119.99898 * 355.70921 * 13 11 10 41 41 H 1.08003 * 119.91529 * 0.02952 * 15 14 13 42 42 H 1.07994 * 120.09106 * 180.25478 * 16 15 14 43 43 H 0.96997 * 120.00406 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.08959 * 179.97438 * 26 17 16 45 45 H 1.08003 * 119.91593 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8532 -0.8427 6 6 4.0805 0.8328 1.3064 7 6 4.0722 2.8580 -0.1246 8 8 3.2870 3.7729 -0.2038 9 8 5.3919 3.1024 -0.1460 10 6 5.8035 4.4896 -0.2669 11 6 7.3084 4.5681 -0.2745 12 8 7.9690 3.5548 -0.1871 13 7 7.9203 5.7645 -0.3794 14 6 9.3078 5.8464 -0.2967 15 6 9.9025 6.9531 0.3091 16 6 11.2607 7.0381 0.3983 17 6 12.0635 6.0097 -0.1331 18 6 13.4701 6.0933 -0.0501 19 1 14.0824 5.7032 -0.8496 20 6 14.0712 6.6815 1.0680 21 7 13.3300 7.2317 1.9958 22 14 15.9315 6.6814 1.2368 23 1 16.5329 7.4015 0.0857 24 1 16.3139 7.3606 2.5007 25 1 16.4266 5.2815 1.2581 26 6 11.4556 4.8978 -0.7482 27 6 10.0960 4.8240 -0.8246 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 5.1705 0.8324 1.3058 36 1 3.7175 1.4221 2.1485 37 1 3.7172 -0.1910 1.3960 38 1 5.4137 4.9045 -1.1964 39 1 5.4138 5.0590 0.5769 40 1 7.3940 6.5683 -0.5126 41 1 9.2858 7.7427 0.7124 42 1 11.7198 7.8936 0.8712 43 1 13.7467 7.6399 2.7708 44 1 12.0646 4.1057 -1.1583 45 1 9.6284 3.9723 -1.2963 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051391907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:57 Heat of formation + Delta-G solvation = -135.357658 kcal Electronic energy + Delta-G solvation = -25444.389369 eV Core-core repulsion = 21618.455527 eV Total energy + Delta-G solvation = -3825.933842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.93315 -41.09176 -39.13977 -37.92305 -36.91437 -36.19268 -34.78068 -33.07084 -31.57647 -31.26372 -29.64099 -27.58102 -26.71525 -25.30287 -23.50244 -22.75488 -22.30957 -21.39747 -20.97209 -19.30015 -18.85548 -18.73091 -17.89890 -17.70387 -17.09270 -16.99779 -16.50127 -16.02963 -15.71400 -15.37263 -15.07183 -14.91719 -14.56311 -14.44040 -14.03683 -13.97825 -13.83420 -13.60851 -13.39570 -13.25538 -13.16020 -12.88498 -12.77478 -12.77019 -12.48897 -12.25152 -11.94643 -11.91374 -11.82758 -11.79567 -11.50070 -11.41244 -11.33019 -11.24456 -10.86922 -10.65318 -9.48640 -8.77489 -8.51657 -6.34730 0.73422 1.05878 1.12154 1.21692 1.39963 1.42675 1.51551 1.67361 2.23814 2.39258 2.79156 3.51624 3.56936 3.67844 3.74940 3.86657 3.98451 4.02234 4.23800 4.32886 4.33073 4.38451 4.50690 4.61258 4.77567 4.85618 4.89752 4.91308 4.98516 5.09390 5.10457 5.12418 5.17071 5.28107 5.30523 5.31136 5.40267 5.42324 5.50860 5.68004 5.87074 5.98649 6.11219 6.36972 6.52903 6.63994 6.66735 6.95416 6.97156 7.24778 8.40932 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.001933 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.431302 B =14482.033039 C =14792.810584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.100 4.100 4 C -0.079 4.079 5 H 0.126 0.874 6 C -0.146 4.146 7 C 0.465 3.535 8 O -0.530 6.530 9 O -0.347 6.347 10 C 0.058 3.942 11 C 0.501 3.499 12 O -0.556 6.556 13 N -0.636 5.636 14 C 0.017 3.983 15 C -0.115 4.115 16 C -0.159 4.159 17 C 0.068 3.932 18 C -0.498 4.498 19 H 0.073 0.927 20 C 0.028 3.972 21 N -0.840 5.840 22 Si 0.988 3.012 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.266 1.266 26 C -0.221 4.221 27 C -0.096 4.096 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.422 0.578 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.285 0.715 44 H 0.096 0.904 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.371 -8.094 -1.863 22.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.138 4.138 4 C -0.098 4.098 5 H 0.144 0.856 6 C -0.203 4.203 7 C 0.309 3.691 8 O -0.419 6.419 9 O -0.262 6.262 10 C -0.019 4.019 11 C 0.288 3.712 12 O -0.433 6.433 13 N -0.282 5.282 14 C -0.076 4.076 15 C -0.135 4.135 16 C -0.179 4.179 17 C 0.066 3.934 18 C -0.529 4.529 19 H 0.092 0.908 20 C -0.184 4.184 21 N -0.468 5.468 22 Si 0.809 3.191 23 H -0.182 1.182 24 H -0.192 1.192 25 H -0.190 1.190 26 C -0.241 4.241 27 C -0.116 4.116 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.260 0.740 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.149 -8.391 -1.589 22.808 hybrid contribution 0.776 0.703 0.082 1.050 sum -20.372 -7.688 -1.507 21.827 Atomic orbital electron populations 1.21771 0.95357 1.02171 1.01814 1.21584 0.96289 0.94800 1.03300 1.21523 0.90613 0.98617 1.03037 1.21269 0.97657 0.87648 1.03245 0.85648 1.21850 1.01712 1.02623 0.94098 1.24585 0.79384 0.93962 0.71148 1.90647 1.56881 1.47655 1.46681 1.86579 1.26786 1.29544 1.83306 1.22698 0.90412 0.81800 1.06987 1.20664 0.90143 0.83617 0.76794 1.90723 1.67245 1.36015 1.49363 1.42656 1.05108 1.09605 1.70873 1.17267 0.81967 0.99444 1.08960 1.20571 0.95110 0.97947 0.99862 1.21182 0.92478 0.99866 1.04397 1.18060 0.94403 0.90287 0.90662 1.19724 0.92254 1.35785 1.05089 0.90839 1.26739 1.05496 0.91834 0.94315 1.69809 1.39159 1.28895 1.08894 0.85152 0.75850 0.79354 0.78704 1.18197 1.19220 1.19042 1.20927 0.94154 0.98925 1.10087 1.20528 0.93375 0.98177 0.99533 0.92940 0.91781 0.92838 0.90505 0.90971 0.91745 0.91707 0.92280 0.92278 0.88351 0.85621 0.85978 0.74018 0.85443 0.86220 0.90400 0.88535 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.16 5.69 30.59 0.17 -0.99 16 3 C -0.10 -1.37 4.03 30.60 0.12 -1.24 16 4 C -0.08 -1.24 2.83 -11.54 -0.03 -1.28 16 5 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 6 C -0.15 -2.08 8.88 71.98 0.64 -1.44 16 7 C 0.46 10.54 7.26 71.24 0.52 11.05 16 8 O -0.53 -13.72 15.67 21.96 0.34 -13.38 16 9 O -0.35 -9.21 9.66 -45.02 -0.43 -9.64 16 10 C 0.06 1.37 5.95 71.23 0.42 1.79 16 11 C 0.50 16.49 7.74 87.65 0.68 17.17 16 12 O -0.56 -23.96 13.92 15.75 0.22 -23.74 16 13 N -0.64 -20.28 5.30 -303.11 -1.61 -21.89 16 14 C 0.02 0.72 6.31 38.57 0.24 0.96 16 15 C -0.11 -5.05 9.90 22.14 0.22 -4.83 16 16 C -0.16 -8.23 8.62 22.48 0.19 -8.03 16 17 C 0.07 3.76 5.55 -21.28 -0.12 3.64 16 18 C -0.50 -27.31 9.02 23.39 0.21 -27.10 16 19 H 0.07 3.89 7.85 -2.91 -0.02 3.86 16 20 C 0.03 1.45 5.42 85.24 0.46 1.91 16 21 N -0.84 -44.12 10.60 21.82 0.23 -43.89 16 22 Si 0.99 38.97 29.56 68.60 2.03 41.00 16 23 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 25 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 26 C -0.22 -11.50 9.74 22.48 0.22 -11.29 16 27 C -0.10 -4.62 8.61 22.13 0.19 -4.43 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.08 0.60 6.57 -2.39 -0.02 0.59 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.99 7.96 -2.39 -0.02 0.98 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.05 8.11 -2.38 -0.02 1.03 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.92 6.57 -2.39 -0.02 0.91 16 38 H 0.13 2.31 8.13 -2.39 -0.02 2.29 16 39 H 0.12 2.37 8.13 -2.39 -0.02 2.35 16 40 H 0.42 9.46 8.82 -92.71 -0.82 8.64 16 41 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 42 H 0.12 6.44 6.13 -2.91 -0.02 6.42 16 43 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 44 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 45 H 0.11 5.15 6.22 -2.91 -0.02 5.14 16 Total: -1.00 -70.24 377.37 5.82 -64.42 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.18 Total: 31.93 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 4.86 Total: -24.82 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: -1.38 Total: -65.78 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: 0.13 Total: -46.76 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -70.24 5.82 -64.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051391907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.935 kcal (2) G-P(sol) polarization free energy of solvation -70.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds