Wall clock time and date at job start Tue Mar 31 2020 12:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46955 * 2 1 4 4 C 1.53005 * 109.46590 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46910 * 180.02562 * 4 3 2 6 6 C 1.50692 * 109.47210 * 179.97438 * 5 4 3 7 7 O 1.20831 * 119.99969 * 0.02562 * 6 5 4 8 8 O 1.34228 * 120.00341 * 180.02562 * 6 5 4 9 9 C 1.45200 * 117.00520 * 185.08467 * 8 6 5 10 10 C 1.50697 * 109.47537 * 184.90887 * 9 8 6 11 11 O 1.21277 * 119.99690 * 355.00398 * 10 9 8 12 12 N 1.34769 * 120.00176 * 174.99618 * 10 9 8 13 13 C 1.37139 * 120.00008 * 3.38353 * 12 10 9 14 14 H 1.08003 * 120.00294 * 305.54779 * 13 12 10 15 15 C 1.38896 * 120.00327 * 125.54590 * 13 12 10 16 16 N 1.31414 * 120.00312 * 181.40619 * 15 13 12 17 17 Si 1.86800 * 119.99589 * 1.40450 * 15 13 12 18 18 H 1.48499 * 109.47248 * 95.25658 * 17 15 13 19 19 H 1.48503 * 109.47228 * 215.25511 * 17 15 13 20 20 H 1.48503 * 109.47494 * 335.25822 * 17 15 13 21 21 C 1.39785 * 120.00278 * 183.37661 * 12 10 9 22 22 C 1.38958 * 120.08276 * 171.68140 * 21 12 10 23 23 C 1.38083 * 119.92779 * 179.97438 * 22 21 12 24 24 C 1.38310 * 120.07222 * 359.97438 * 23 22 21 25 25 C 1.38303 * 120.16063 * 0.02562 * 24 23 22 26 26 C 1.38080 * 120.07621 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.46852 * 299.99775 * 1 2 3 28 28 H 1.08998 * 109.47219 * 59.99673 * 1 2 3 29 29 H 1.08998 * 109.47101 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46852 * 240.00225 * 2 1 3 31 31 H 1.08998 * 109.47219 * 120.00327 * 2 1 3 32 32 H 1.08998 * 109.46796 * 60.00637 * 3 2 1 33 33 H 1.08998 * 109.47424 * 300.00201 * 3 2 1 34 34 H 1.08998 * 109.47060 * 60.00762 * 4 3 2 35 35 H 1.08998 * 109.47371 * 300.00197 * 4 3 2 36 36 H 1.09004 * 109.47004 * 60.00273 * 5 4 3 37 37 H 1.08998 * 109.47258 * 300.00258 * 5 4 3 38 38 H 1.08998 * 109.46937 * 64.90809 * 9 8 6 39 39 H 1.09003 * 109.46944 * 304.91016 * 9 8 6 40 40 H 0.96997 * 120.00195 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.03940 * 359.70778 * 22 21 12 42 42 H 1.07991 * 119.96600 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.91556 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.96251 * 180.02562 * 25 24 23 45 45 H 1.08002 * 120.04211 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.5870 2.8849 0.0000 7 8 6.1911 1.8385 -0.0009 8 8 6.2582 4.0473 0.0010 9 6 7.7038 3.9740 -0.1137 10 6 8.2896 5.3554 0.0259 11 8 7.5576 6.3184 0.1136 12 7 9.6268 5.5207 0.0535 13 6 10.4549 4.4406 -0.1151 14 1 10.3466 3.5729 0.5189 15 6 11.4328 4.4624 -1.1011 16 7 12.2081 3.4166 -1.2810 17 14 11.6460 5.9782 -2.1717 18 1 12.7112 6.8414 -1.6013 19 1 12.0274 5.5641 -3.5459 20 1 10.3688 6.7344 -2.2192 21 6 10.1699 6.7931 0.2538 22 6 11.5366 6.9433 0.4551 23 6 12.0697 8.2018 0.6521 24 6 11.2450 9.3121 0.6487 25 6 9.8843 9.1664 0.4486 26 6 9.3444 7.9110 0.2510 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9284 0.8891 36 1 3.7171 3.3982 0.8905 37 1 3.7164 3.3993 -0.8895 38 1 7.9706 3.5629 -1.0873 39 1 8.0985 3.3308 0.6728 40 1 12.8908 3.4317 -1.9698 41 1 12.1806 6.0763 0.4618 42 1 13.1317 8.3192 0.8090 43 1 11.6646 10.2952 0.8034 44 1 9.2434 10.0357 0.4461 45 1 8.2817 7.7978 0.0952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058970210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:12 Heat of formation + Delta-G solvation = -91.347644 kcal Electronic energy + Delta-G solvation = -26318.219094 eV Core-core repulsion = 22494.193670 eV Total energy + Delta-G solvation = -3824.025424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.48836 -39.90934 -37.69744 -36.59481 -35.81771 -35.21801 -32.52516 -32.31896 -30.21984 -30.01286 -28.23215 -26.94507 -25.32584 -23.18906 -22.08968 -21.47829 -21.23047 -20.31145 -19.60006 -18.29115 -17.47027 -16.70880 -16.32271 -16.08201 -15.95183 -15.69798 -15.38601 -14.74293 -14.23522 -14.02485 -13.88187 -13.66925 -13.50256 -13.34930 -12.99329 -12.90102 -12.73718 -12.50529 -12.30391 -12.05683 -11.94482 -11.79849 -11.42172 -11.24588 -11.16214 -11.08775 -11.06708 -10.73877 -10.72439 -10.39292 -10.36427 -10.25048 -10.15400 -9.49068 -9.08702 -8.52539 -8.10012 -7.17467 -6.64135 -4.63164 1.94910 2.09412 2.39455 2.69553 3.09198 3.19112 3.28463 3.36807 3.99588 4.07366 4.51517 4.53631 4.67301 4.73277 4.75617 4.96255 4.96962 5.16996 5.30040 5.32515 5.37786 5.49871 5.55821 5.57250 5.62389 5.66714 5.71549 5.76352 5.80731 5.82369 5.87516 5.97606 6.08085 6.17605 6.22120 6.31974 6.46440 6.69683 6.73584 7.09523 7.16517 7.22683 7.28234 7.63393 7.86272 7.94676 8.07959 8.64346 8.93254 9.20052 10.37611 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.002757 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.375217 B =10151.776508 C =11134.483254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.112 4.112 6 C 0.457 3.543 7 O -0.508 6.508 8 O -0.341 6.341 9 C 0.071 3.929 10 C 0.502 3.498 11 O -0.541 6.541 12 N -0.403 5.403 13 C -0.380 4.380 14 H 0.112 0.888 15 C 0.085 3.915 16 N -0.852 5.852 17 Si 0.873 3.127 18 H -0.252 1.252 19 H -0.289 1.289 20 H -0.257 1.257 21 C 0.159 3.841 22 C -0.159 4.159 23 C -0.104 4.104 24 C -0.169 4.169 25 C -0.108 4.108 26 C -0.183 4.183 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.281 0.719 41 H 0.140 0.860 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.114 0.886 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.859 -0.364 1.552 13.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.148 4.148 5 C -0.149 4.149 6 C 0.299 3.701 7 O -0.396 6.396 8 O -0.257 6.257 9 C -0.005 4.005 10 C 0.293 3.707 11 O -0.423 6.423 12 N -0.113 5.113 13 C -0.506 4.506 14 H 0.129 0.871 15 C -0.126 4.126 16 N -0.484 5.484 17 Si 0.699 3.301 18 H -0.177 1.177 19 H -0.216 1.216 20 H -0.181 1.181 21 C 0.063 3.937 22 C -0.179 4.179 23 C -0.123 4.123 24 C -0.189 4.189 25 C -0.127 4.127 26 C -0.203 4.203 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.157 0.843 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.872 -0.403 1.497 13.958 hybrid contribution 0.809 0.482 -0.586 1.109 sum -13.063 0.079 0.911 13.095 Atomic orbital electron populations 1.21781 0.95957 1.01524 1.01768 1.21526 0.95696 0.96826 1.02305 1.21623 0.94694 0.97088 1.02334 1.21467 0.95070 0.94276 1.03991 1.21401 0.87424 1.00215 1.05907 1.23775 0.91842 0.81763 0.72674 1.90687 1.70607 1.33058 1.45272 1.86465 1.21924 1.34234 1.83037 1.22561 0.75844 0.96608 1.05477 1.20245 0.82491 0.89686 0.78302 1.90254 1.60219 1.40255 1.51563 1.41251 1.04327 1.05889 1.59879 1.19088 1.16651 0.95185 1.19696 0.87075 1.25493 0.94895 0.97017 0.95231 1.69644 1.18445 1.28604 1.31683 0.86956 0.81259 0.82615 0.79273 1.17709 1.21606 1.18056 1.18447 0.92768 0.85936 0.96533 1.21031 0.94389 0.98473 1.04011 1.20826 0.99041 0.92252 1.00205 1.20937 0.94152 0.97905 1.05874 1.21023 0.94734 0.96950 0.99983 1.22765 1.04039 0.90717 1.02750 0.92774 0.92777 0.92872 0.91893 0.91900 0.91727 0.91727 0.90899 0.90920 0.87743 0.87698 0.87582 0.88078 0.90834 0.84277 0.86752 0.87249 0.86830 0.80486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.12 -0.90 5.21 -26.73 -0.14 -1.04 16 4 C -0.11 -1.07 4.50 -26.73 -0.12 -1.19 16 5 C -0.11 -1.18 5.81 -27.88 -0.16 -1.34 16 6 C 0.46 7.16 7.95 36.00 0.29 7.45 16 7 O -0.51 -9.30 15.64 -18.75 -0.29 -9.60 16 8 O -0.34 -6.21 9.76 -45.88 -0.45 -6.66 16 9 C 0.07 1.43 4.87 36.00 0.18 1.60 16 10 C 0.50 11.42 7.65 -10.99 -0.08 11.34 16 11 O -0.54 -12.74 12.92 -14.05 -0.18 -12.92 16 12 N -0.40 -9.67 2.30 -58.98 -0.14 -9.80 16 13 C -0.38 -9.57 8.01 -14.93 -0.12 -9.69 16 14 H 0.11 2.91 7.70 -52.48 -0.40 2.51 16 15 C 0.08 2.17 4.61 -17.49 -0.08 2.09 16 16 N -0.85 -22.65 13.96 55.49 0.77 -21.87 16 17 Si 0.87 20.65 23.84 -169.99 -4.05 16.60 16 18 H -0.25 -5.72 6.14 56.52 0.35 -5.37 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.26 -6.38 6.48 56.52 0.37 -6.01 16 21 C 0.16 3.71 4.12 -83.70 -0.35 3.37 16 22 C -0.16 -3.51 5.57 -39.37 -0.22 -3.73 16 23 C -0.10 -2.00 9.76 -39.61 -0.39 -2.39 16 24 C -0.17 -3.00 10.04 -39.53 -0.40 -3.40 16 25 C -0.11 -2.02 10.04 -39.62 -0.40 -2.42 16 26 C -0.18 -4.00 9.03 -39.37 -0.36 -4.36 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 39 H 0.10 2.00 7.57 -51.93 -0.39 1.61 16 40 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.14 3.23 5.70 -52.49 -0.30 2.93 16 42 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.18 4.02 4.58 -55.99 -0.26 3.76 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -29.38 366.84 -7.86 -37.24 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.92 Total: 6.88 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.14 Total: -5.39 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.64 Total: -31.68 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.92 Total: -29.18 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.05 Total: 16.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.38 -7.86 -37.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058970210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.105 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds