Wall clock time and date at job start Tue Mar 31 2020 12:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47230 * 2 1 4 4 C 1.52997 * 109.47087 * 239.99768 * 2 1 3 5 5 C 1.53003 * 109.46953 * 119.99717 * 2 1 3 6 6 C 1.50692 * 109.47258 * 60.00477 * 5 2 1 7 7 O 1.20831 * 119.99933 * 359.97438 * 6 5 2 8 8 O 1.34228 * 120.00377 * 180.02562 * 6 5 2 9 9 C 1.45200 * 117.00520 * 185.08030 * 8 6 5 10 10 C 1.50697 * 109.47507 * 184.91289 * 9 8 6 11 11 O 1.21277 * 119.99684 * 354.99499 * 10 9 8 12 12 N 1.34769 * 120.00179 * 175.00195 * 10 9 8 13 13 C 1.37139 * 120.00033 * 3.37424 * 12 10 9 14 14 H 1.08003 * 120.00294 * 305.55269 * 13 12 10 15 15 C 1.38896 * 120.00327 * 125.55080 * 13 12 10 16 16 N 1.31414 * 120.00312 * 181.40619 * 15 13 12 17 17 Si 1.86800 * 119.99589 * 1.40450 * 15 13 12 18 18 H 1.48499 * 109.47248 * 95.25658 * 17 15 13 19 19 H 1.48503 * 109.47228 * 215.25511 * 17 15 13 20 20 H 1.48503 * 109.47494 * 335.25822 * 17 15 13 21 21 C 1.39785 * 120.00253 * 183.37221 * 12 10 9 22 22 C 1.38958 * 120.08276 * 171.67649 * 21 12 10 23 23 C 1.38083 * 119.92779 * 179.97438 * 22 21 12 24 24 C 1.38310 * 120.07222 * 359.97438 * 23 22 21 25 25 C 1.38303 * 120.16063 * 0.02562 * 24 23 22 26 26 C 1.38080 * 120.07621 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.46907 * 300.00039 * 1 2 3 28 28 H 1.08998 * 109.47126 * 60.00403 * 1 2 3 29 29 H 1.09004 * 109.46655 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47371 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46720 * 300.00390 * 3 2 1 32 32 H 1.08998 * 109.47060 * 59.99377 * 3 2 1 33 33 H 1.08996 * 109.47463 * 299.99932 * 4 2 1 34 34 H 1.09003 * 109.47063 * 60.00338 * 4 2 1 35 35 H 1.09007 * 109.47238 * 179.97438 * 4 2 1 36 36 H 1.08996 * 109.47513 * 299.99873 * 5 2 1 37 37 H 1.09007 * 109.46820 * 179.97438 * 5 2 1 38 38 H 1.08998 * 109.46937 * 64.90809 * 9 8 6 39 39 H 1.09003 * 109.46944 * 304.91016 * 9 8 6 40 40 H 0.96997 * 120.00195 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.03940 * 359.70778 * 22 21 12 42 42 H 1.07991 * 119.96600 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.91556 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.96251 * 180.02562 * 25 24 23 45 45 H 1.08002 * 120.04211 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.5378 -2.1420 1.2493 7 8 0.8428 -2.5371 0.3433 8 8 1.8616 -2.9683 2.2563 9 6 1.4388 -4.3522 2.1355 10 6 1.7812 -5.0944 3.4015 11 8 2.4079 -4.5396 4.2791 12 7 1.3910 -6.3748 3.5585 13 6 0.7430 -7.0241 2.5390 14 1 -0.1477 -6.5944 2.1050 15 6 1.2323 -8.2344 2.0645 16 7 0.6273 -8.8428 1.0691 17 14 2.7503 -8.9970 2.8413 18 1 2.3367 -9.9806 3.8741 19 1 3.5495 -9.6843 1.7952 20 1 3.5715 -7.9326 3.4721 21 6 1.6468 -7.0412 4.7604 22 6 1.0977 -8.2966 4.9912 23 6 1.3529 -8.9522 6.1794 24 6 2.1545 -8.3609 7.1390 25 6 2.7026 -7.1114 6.9127 26 6 2.4516 -6.4501 5.7268 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 1.6767 -0.2074 2.1393 37 1 3.1301 -0.7216 1.2491 38 1 1.9507 -4.8162 1.2925 39 1 0.3617 -4.3900 1.9722 40 1 0.9692 -9.6878 0.7376 41 1 0.4686 -8.7573 4.2440 42 1 0.9262 -9.9278 6.3597 43 1 2.3521 -8.8757 8.0676 44 1 3.3284 -6.6528 7.6640 45 1 2.8796 -5.4743 5.5508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060650241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:15 Heat of formation + Delta-G solvation = -76.565778 kcal Electronic energy + Delta-G solvation = -27233.070118 eV Core-core repulsion = 23409.685684 eV Total energy + Delta-G solvation = -3823.384434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.66252 -40.05286 -37.91717 -37.18548 -35.65185 -35.21062 -32.32012 -30.28072 -30.14502 -29.04095 -27.32845 -27.25360 -27.10536 -25.32022 -22.32889 -21.58144 -21.03259 -19.63074 -18.95445 -18.26874 -17.51422 -16.51085 -16.28873 -16.08644 -15.84015 -15.41795 -14.84873 -14.57523 -14.45281 -14.25290 -13.90910 -13.42035 -13.32937 -13.26006 -12.90577 -12.66821 -12.49708 -12.39860 -12.23847 -12.07826 -11.87256 -11.84976 -11.42831 -11.33653 -11.28230 -11.07447 -10.89206 -10.77458 -10.72472 -10.37819 -10.26624 -10.15406 -9.83722 -9.49160 -9.08781 -8.52448 -8.10117 -7.17525 -6.64303 -4.63312 1.94827 2.09312 2.38545 2.70576 3.09091 3.19063 3.28402 3.36838 3.99774 4.08617 4.49357 4.51423 4.69050 4.75342 4.81494 5.18121 5.29826 5.33559 5.34945 5.45958 5.52358 5.55717 5.64598 5.65442 5.71343 5.77203 5.80770 5.81934 5.85374 5.99273 5.99693 6.11351 6.22008 6.31600 6.35577 6.39977 6.46357 6.72724 6.83512 7.09414 7.16504 7.22617 7.28107 7.63239 7.86111 7.97502 8.08015 8.64303 8.93213 9.20073 10.37381 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.003469 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.591306 B = 8068.891550 C = 9016.826754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.056 4.056 3 C -0.140 4.140 4 C -0.157 4.157 5 C -0.105 4.105 6 C 0.459 3.541 7 O -0.499 6.499 8 O -0.341 6.341 9 C 0.072 3.928 10 C 0.501 3.499 11 O -0.541 6.541 12 N -0.402 5.402 13 C -0.380 4.380 14 H 0.112 0.888 15 C 0.085 3.915 16 N -0.851 5.851 17 Si 0.873 3.127 18 H -0.252 1.252 19 H -0.289 1.289 20 H -0.257 1.257 21 C 0.159 3.841 22 C -0.158 4.158 23 C -0.105 4.105 24 C -0.170 4.170 25 C -0.108 4.108 26 C -0.183 4.183 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.281 0.719 41 H 0.140 0.860 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.114 0.886 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 11.755 0.669 12.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.056 4.056 3 C -0.198 4.198 4 C -0.214 4.214 5 C -0.142 4.142 6 C 0.302 3.698 7 O -0.387 6.387 8 O -0.257 6.257 9 C -0.004 4.004 10 C 0.292 3.708 11 O -0.423 6.423 12 N -0.113 5.113 13 C -0.506 4.506 14 H 0.129 0.871 15 C -0.126 4.126 16 N -0.484 5.484 17 Si 0.699 3.301 18 H -0.177 1.177 19 H -0.216 1.216 20 H -0.181 1.181 21 C 0.063 3.937 22 C -0.179 4.179 23 C -0.123 4.123 24 C -0.189 4.189 25 C -0.127 4.127 26 C -0.203 4.203 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.157 0.843 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.699 11.761 0.610 12.082 hybrid contribution 0.478 -0.922 0.137 1.048 sum 3.177 10.839 0.747 11.320 Atomic orbital electron populations 1.22144 0.93899 1.04247 1.01094 1.20376 0.96627 0.94772 0.93855 1.21870 1.01001 0.94866 1.02019 1.22148 1.00256 1.02863 0.96152 1.21520 1.03148 0.88648 1.00915 1.23708 0.77851 0.88847 0.79376 1.90568 1.35199 1.77301 1.35679 1.86473 1.72677 1.21374 1.45135 1.22550 1.02564 0.77357 0.97954 1.20257 0.79968 0.82896 0.87656 1.90255 1.40750 1.68618 1.42665 1.41248 1.49176 1.09916 1.10978 1.19086 1.12070 1.07545 1.11929 0.87082 1.25485 0.96793 0.96349 0.93946 1.69643 1.39280 1.16538 1.22891 0.86963 0.82709 0.81269 0.79201 1.17716 1.21607 1.18076 1.18449 0.95738 0.92850 0.86663 1.21028 1.02876 0.95152 0.98830 1.20827 0.98751 0.99229 0.93532 1.20939 1.01779 0.96734 0.99434 1.21024 0.99632 0.94855 0.97190 1.22765 1.00123 1.04143 0.93229 0.93258 0.92813 0.89825 0.92496 0.92225 0.92504 0.89801 0.92807 0.93239 0.87783 0.87751 0.87602 0.88076 0.90846 0.84282 0.86755 0.87251 0.86835 0.80485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.18 37.16 0.30 -1.42 16 2 C -0.06 -0.57 0.77 -154.50 -0.12 -0.69 16 3 C -0.14 -1.11 8.47 37.16 0.31 -0.79 16 4 C -0.16 -1.74 8.18 37.16 0.30 -1.44 16 5 C -0.10 -1.15 4.88 -27.89 -0.14 -1.29 16 6 C 0.46 7.01 7.37 36.00 0.27 7.27 16 7 O -0.50 -8.48 11.01 -18.75 -0.21 -8.68 16 8 O -0.34 -6.12 9.76 -45.88 -0.45 -6.57 16 9 C 0.07 1.42 4.87 36.00 0.18 1.59 16 10 C 0.50 11.32 7.65 -10.99 -0.08 11.24 16 11 O -0.54 -12.68 12.92 -14.05 -0.18 -12.86 16 12 N -0.40 -9.59 2.30 -58.98 -0.14 -9.73 16 13 C -0.38 -9.50 8.01 -14.93 -0.12 -9.62 16 14 H 0.11 2.88 7.70 -52.48 -0.40 2.48 16 15 C 0.09 2.17 4.61 -17.49 -0.08 2.09 16 16 N -0.85 -22.49 13.96 55.49 0.77 -21.72 16 17 Si 0.87 20.56 23.84 -169.99 -4.05 16.51 16 18 H -0.25 -5.71 6.14 56.52 0.35 -5.36 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.26 -6.37 6.48 56.52 0.37 -6.00 16 21 C 0.16 3.69 4.12 -83.70 -0.35 3.35 16 22 C -0.16 -3.50 5.57 -39.37 -0.22 -3.72 16 23 C -0.10 -2.00 9.76 -39.61 -0.39 -2.39 16 24 C -0.17 -3.00 10.04 -39.53 -0.40 -3.40 16 25 C -0.11 -2.02 10.04 -39.62 -0.40 -2.42 16 26 C -0.18 -3.99 9.03 -39.37 -0.36 -4.34 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.14 5.52 -51.93 -0.29 0.85 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 1.15 5.52 -51.93 -0.29 0.86 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 39 H 0.10 1.96 7.57 -51.93 -0.39 1.57 16 40 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.14 3.22 5.70 -52.49 -0.30 2.92 16 42 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.18 4.01 4.58 -55.99 -0.26 3.75 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -28.45 355.56 -6.82 -35.26 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.65 Total: 8.39 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.28 Total: -5.96 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.64 Total: -31.44 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.84 Total: -28.12 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.05 Total: 16.51 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.45 -6.82 -35.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060650241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.302 kcal (2) G-P(sol) polarization free energy of solvation -28.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds