Wall clock time and date at job start Tue Mar 31 2020 12:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47230 * 2 1 4 4 C 1.52997 * 109.47087 * 239.99768 * 2 1 3 5 5 C 1.53003 * 109.46953 * 119.99717 * 2 1 3 6 6 C 1.50692 * 109.47258 * 60.00477 * 5 2 1 7 7 O 1.20831 * 119.99933 * 359.97438 * 6 5 2 8 8 O 1.34228 * 120.00377 * 180.02562 * 6 5 2 9 9 C 1.45200 * 117.00520 * 185.08030 * 8 6 5 10 10 C 1.50697 * 109.47507 * 184.91289 * 9 8 6 11 11 O 1.21277 * 119.99684 * 354.99499 * 10 9 8 12 12 N 1.34769 * 120.00179 * 175.00195 * 10 9 8 13 13 C 1.37139 * 120.00033 * 3.37424 * 12 10 9 14 14 H 1.08003 * 120.00294 * 305.55269 * 13 12 10 15 15 C 1.38896 * 120.00327 * 125.55080 * 13 12 10 16 16 N 1.31414 * 120.00312 * 181.40619 * 15 13 12 17 17 Si 1.86800 * 119.99589 * 1.40450 * 15 13 12 18 18 H 1.48499 * 109.47248 * 95.25658 * 17 15 13 19 19 H 1.48503 * 109.47228 * 215.25511 * 17 15 13 20 20 H 1.48503 * 109.47494 * 335.25822 * 17 15 13 21 21 C 1.39785 * 120.00253 * 183.37221 * 12 10 9 22 22 C 1.38958 * 120.08276 * 171.67649 * 21 12 10 23 23 C 1.38083 * 119.92779 * 179.97438 * 22 21 12 24 24 C 1.38310 * 120.07222 * 359.97438 * 23 22 21 25 25 C 1.38303 * 120.16063 * 0.02562 * 24 23 22 26 26 C 1.38080 * 120.07621 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.46907 * 300.00039 * 1 2 3 28 28 H 1.08998 * 109.47126 * 60.00403 * 1 2 3 29 29 H 1.09004 * 109.46655 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47371 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46720 * 300.00390 * 3 2 1 32 32 H 1.08998 * 109.47060 * 59.99377 * 3 2 1 33 33 H 1.08996 * 109.47463 * 299.99932 * 4 2 1 34 34 H 1.09003 * 109.47063 * 60.00338 * 4 2 1 35 35 H 1.09007 * 109.47238 * 179.97438 * 4 2 1 36 36 H 1.08996 * 109.47513 * 299.99873 * 5 2 1 37 37 H 1.09007 * 109.46820 * 179.97438 * 5 2 1 38 38 H 1.08998 * 109.46937 * 64.90809 * 9 8 6 39 39 H 1.09003 * 109.46944 * 304.91016 * 9 8 6 40 40 H 0.96997 * 120.00195 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.03940 * 359.70778 * 22 21 12 42 42 H 1.07991 * 119.96600 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.91556 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.96251 * 180.02562 * 25 24 23 45 45 H 1.08002 * 120.04211 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.5378 -2.1420 1.2493 7 8 0.8428 -2.5371 0.3433 8 8 1.8616 -2.9683 2.2563 9 6 1.4388 -4.3522 2.1355 10 6 1.7812 -5.0944 3.4015 11 8 2.4079 -4.5396 4.2791 12 7 1.3910 -6.3748 3.5585 13 6 0.7430 -7.0241 2.5390 14 1 -0.1477 -6.5944 2.1050 15 6 1.2323 -8.2344 2.0645 16 7 0.6273 -8.8428 1.0691 17 14 2.7503 -8.9970 2.8413 18 1 2.3367 -9.9806 3.8741 19 1 3.5495 -9.6843 1.7952 20 1 3.5715 -7.9326 3.4721 21 6 1.6468 -7.0412 4.7604 22 6 1.0977 -8.2966 4.9912 23 6 1.3529 -8.9522 6.1794 24 6 2.1545 -8.3609 7.1390 25 6 2.7026 -7.1114 6.9127 26 6 2.4516 -6.4501 5.7268 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 1.6767 -0.2074 2.1393 37 1 3.1301 -0.7216 1.2491 38 1 1.9507 -4.8162 1.2925 39 1 0.3617 -4.3900 1.9722 40 1 0.9692 -9.6878 0.7376 41 1 0.4686 -8.7573 4.2440 42 1 0.9262 -9.9278 6.3597 43 1 2.3521 -8.8757 8.0676 44 1 3.3284 -6.6528 7.6640 45 1 2.8796 -5.4743 5.5508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060650241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:15 Heat of formation + Delta-G solvation = -90.676695 kcal Electronic energy + Delta-G solvation = -27233.682014 eV Core-core repulsion = 23409.685684 eV Total energy + Delta-G solvation = -3823.996330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.12290 -41.56883 -39.38523 -38.42564 -37.06405 -36.80870 -34.26285 -31.82718 -31.69340 -30.24914 -28.56085 -28.13547 -28.02908 -27.19400 -23.87643 -23.13627 -22.35069 -21.41272 -20.11667 -19.79526 -18.85290 -18.03279 -17.87264 -17.60531 -17.40377 -16.94693 -16.38519 -15.91785 -15.47585 -15.42318 -15.40427 -15.00763 -14.83135 -14.67335 -14.57248 -14.18120 -13.97312 -13.87518 -13.45814 -13.20074 -13.03257 -12.92437 -12.71975 -12.67260 -12.50749 -12.37800 -12.23128 -12.09282 -11.91658 -11.71216 -11.67725 -11.57586 -11.32627 -10.97653 -10.94260 -10.24858 -9.68368 -8.92700 -8.58756 -6.61973 0.35098 0.51016 1.15514 1.21855 1.27836 1.32659 1.38475 1.62918 2.09501 2.51977 2.67291 3.04295 3.57146 3.59641 3.77115 3.88168 4.07619 4.11965 4.16680 4.18334 4.28147 4.44940 4.52575 4.58500 4.62055 4.64586 4.74606 4.81061 4.84503 4.86888 4.98385 5.07904 5.11227 5.14167 5.19539 5.35855 5.39133 5.44950 5.50173 5.53461 5.62808 5.69752 5.71121 5.88631 5.94454 6.32755 6.69431 6.75064 7.06394 7.36159 8.42836 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.003469 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.591306 B = 8068.891550 C = 9016.826754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.055 4.055 3 C -0.134 4.134 4 C -0.157 4.157 5 C -0.100 4.100 6 C 0.452 3.548 7 O -0.519 6.519 8 O -0.350 6.350 9 C 0.082 3.918 10 C 0.495 3.505 11 O -0.552 6.552 12 N -0.414 5.414 13 C -0.373 4.373 14 H 0.090 0.910 15 C 0.059 3.941 16 N -0.884 5.884 17 Si 0.919 3.081 18 H -0.235 1.235 19 H -0.289 1.289 20 H -0.276 1.276 21 C 0.127 3.873 22 C -0.179 4.179 23 C -0.105 4.105 24 C -0.154 4.154 25 C -0.103 4.103 26 C -0.203 4.203 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.286 0.714 41 H 0.120 0.880 42 H 0.145 0.855 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 12.390 2.787 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.055 4.055 3 C -0.191 4.191 4 C -0.214 4.214 5 C -0.137 4.137 6 C 0.297 3.703 7 O -0.408 6.408 8 O -0.266 6.266 9 C 0.005 3.995 10 C 0.286 3.714 11 O -0.435 6.435 12 N -0.125 5.125 13 C -0.500 4.500 14 H 0.107 0.893 15 C -0.149 4.149 16 N -0.518 5.518 17 Si 0.745 3.255 18 H -0.158 1.158 19 H -0.217 1.217 20 H -0.201 1.201 21 C 0.032 3.968 22 C -0.200 4.200 23 C -0.123 4.123 24 C -0.173 4.173 25 C -0.121 4.121 26 C -0.222 4.222 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.138 0.862 42 H 0.163 0.837 43 H 0.174 0.826 44 H 0.167 0.833 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.080 12.395 2.737 13.333 hybrid contribution 0.008 -1.061 -0.439 1.148 sum 4.087 11.334 2.298 12.266 Atomic orbital electron populations 1.22116 0.94737 1.02404 1.02113 1.20424 0.95971 0.96261 0.92859 1.21820 1.01689 0.92664 1.02952 1.22121 1.00908 1.01150 0.97244 1.21756 1.04320 0.85314 1.02280 1.24749 0.77295 0.89905 0.78318 1.90585 1.36131 1.77842 1.36256 1.86504 1.73065 1.20421 1.46620 1.22254 1.02121 0.78682 0.96394 1.20618 0.79701 0.82730 0.88323 1.90243 1.41272 1.68765 1.43220 1.41299 1.49574 1.10337 1.11330 1.18878 1.11323 1.07475 1.12286 0.89258 1.25882 0.98375 0.96590 0.94065 1.69693 1.40690 1.17324 1.24111 0.86259 0.80137 0.80372 0.78779 1.15819 1.21676 1.20095 1.18734 0.97372 0.93738 0.86947 1.21041 1.03633 0.95233 1.00066 1.21259 0.98364 1.00273 0.92416 1.21442 0.99424 0.96013 1.00404 1.21451 0.99148 0.95120 0.96404 1.22775 1.00676 1.04245 0.94523 0.92141 0.91927 0.93003 0.91385 0.91573 0.91355 0.93014 0.91923 0.92168 0.85706 0.85683 0.88097 0.88541 0.90373 0.86214 0.83730 0.82646 0.83285 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.18 71.98 0.59 -2.76 16 2 C -0.06 -1.04 0.77 -52.18 -0.04 -1.08 16 3 C -0.13 -1.72 8.47 71.98 0.61 -1.11 16 4 C -0.16 -3.39 8.18 71.98 0.59 -2.80 16 5 C -0.10 -2.04 4.88 29.85 0.15 -1.90 16 6 C 0.45 14.08 7.37 71.23 0.52 14.60 16 7 O -0.52 -18.51 11.01 21.95 0.24 -18.27 16 8 O -0.35 -12.91 9.76 -45.06 -0.44 -13.35 16 9 C 0.08 3.41 4.87 71.24 0.35 3.76 16 10 C 0.49 23.24 7.65 87.66 0.67 23.91 16 11 O -0.55 -26.54 12.92 15.73 0.20 -26.34 16 12 N -0.41 -20.42 2.30 -458.91 -1.06 -21.48 16 13 C -0.37 -19.50 8.01 84.02 0.67 -18.83 16 14 H 0.09 4.95 7.70 -2.91 -0.02 4.93 16 15 C 0.06 3.09 4.61 84.91 0.39 3.48 16 16 N -0.88 -48.06 13.96 21.65 0.30 -47.76 16 17 Si 0.92 42.96 23.84 68.60 1.64 44.60 16 18 H -0.23 -10.14 6.14 99.48 0.61 -9.53 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.28 -13.71 6.48 99.48 0.64 -13.07 16 21 C 0.13 5.94 4.12 38.22 0.16 6.10 16 22 C -0.18 -7.80 5.57 22.41 0.12 -7.68 16 23 C -0.10 -3.67 9.76 22.25 0.22 -3.45 16 24 C -0.15 -4.75 10.04 22.30 0.22 -4.52 16 25 C -0.10 -3.49 10.04 22.25 0.22 -3.27 16 26 C -0.20 -8.68 9.03 22.41 0.20 -8.48 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.45 5.52 -2.38 -0.01 1.44 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 1.46 5.52 -2.39 -0.01 1.45 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.10 4.23 8.14 -2.39 -0.02 4.21 16 39 H 0.10 4.03 7.57 -2.39 -0.02 4.01 16 40 H 0.29 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.12 5.62 5.70 -2.91 -0.02 5.60 16 42 H 0.14 4.13 8.06 -2.92 -0.02 4.10 16 43 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 44 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 45 H 0.17 7.47 4.58 -58.42 -0.27 7.20 16 Total: -1.00 -64.03 355.56 7.11 -56.92 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.58 Total: 29.70 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 5.65 Total: -4.03 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -0.76 Total: -69.23 kcal Atomic # 8 Polarization: -57.96 SS G_CDS: 0.01 Total: -57.96 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.64 Total: 44.60 kcal Total: -64.03 7.11 -56.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060650241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.758 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds