Wall clock time and date at job start Tue Mar 31 2020 12:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 C 1.52998 * 109.47011 * 119.99910 * 2 1 3 5 5 C 1.53001 * 109.47150 * 176.51558 * 4 2 1 6 6 H 1.09000 * 109.68411 * 50.57843 * 5 4 2 7 7 C 1.53299 * 109.71372 * 171.11600 * 5 4 2 8 8 O 1.42960 * 109.22341 * 172.04584 * 7 5 4 9 9 C 1.42967 * 114.16474 * 297.41546 * 8 7 5 10 10 C 1.52880 * 109.29635 * 62.45117 * 9 8 7 11 11 N 1.47152 * 109.68025 * 290.05750 * 5 4 2 12 12 S 1.65595 * 120.98348 * 9.68535 * 11 5 4 13 13 O 1.42102 * 104.27701 * 336.92711 * 12 11 5 14 14 O 1.42106 * 104.27920 * 209.07313 * 12 11 5 15 15 C 1.81395 * 104.45291 * 93.00113 * 12 11 5 16 16 C 1.52998 * 109.47361 * 190.54068 * 15 12 11 17 17 C 1.52998 * 109.47445 * 179.97438 * 16 15 12 18 18 C 1.50697 * 109.47561 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99649 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00225 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00199 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00049 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47229 * 89.99911 * 22 20 18 24 24 H 1.48500 * 109.47143 * 210.00323 * 22 20 18 25 25 H 1.48504 * 109.47085 * 329.99877 * 22 20 18 26 26 H 1.09002 * 109.47224 * 300.00080 * 1 2 3 27 27 H 1.09003 * 109.46783 * 59.99980 * 1 2 3 28 28 H 1.08996 * 109.47339 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47224 * 239.99920 * 2 1 3 30 30 H 1.09001 * 109.47040 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47044 * 299.99853 * 3 2 1 32 32 H 1.09002 * 109.47095 * 59.99840 * 3 2 1 33 33 H 1.09000 * 109.47310 * 56.51585 * 4 2 1 34 34 H 1.09001 * 109.47625 * 296.51508 * 4 2 1 35 35 H 1.09004 * 109.51019 * 291.96570 * 7 5 4 36 36 H 1.08996 * 109.51178 * 52.06509 * 7 5 4 37 37 H 1.08996 * 109.51598 * 182.50838 * 9 8 7 38 38 H 1.09002 * 109.51131 * 302.66377 * 9 8 7 39 39 H 1.09007 * 109.61886 * 188.11784 * 10 9 8 40 40 H 1.08997 * 109.52364 * 67.69870 * 10 9 8 41 41 H 1.09004 * 109.46861 * 310.54000 * 15 12 11 42 42 H 1.08996 * 109.47553 * 70.53588 * 15 12 11 43 43 H 1.09004 * 109.47077 * 299.99799 * 16 15 12 44 44 H 1.09002 * 109.47289 * 60.00006 * 16 15 12 45 45 H 1.09004 * 109.46842 * 299.99972 * 17 16 15 46 46 H 1.09005 * 109.47340 * 59.99705 * 17 16 15 47 47 H 0.96997 * 120.00083 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5674 -0.7976 1.2062 6 1 3.9791 0.1918 1.0067 7 6 4.0973 -1.3162 2.5480 8 8 5.5016 -1.5597 2.4371 9 6 5.8475 -2.5670 1.4834 10 6 5.4063 -2.1168 0.0906 11 7 3.9873 -1.7314 0.1493 12 16 2.8942 -2.3359 -0.9378 13 8 1.6417 -2.2202 -0.2765 14 8 3.4201 -3.6073 -1.2935 15 6 2.9783 -1.1957 -2.3460 16 6 1.8285 -1.4915 -3.3112 17 6 1.8990 -0.5294 -4.4987 18 6 0.7670 -0.8212 -5.4496 19 1 0.0674 -1.6139 -5.2292 20 6 0.6243 -0.0761 -6.6009 21 7 1.4765 0.8889 -6.8695 22 14 -0.7786 -0.4383 -7.7800 23 1 -1.9635 0.3740 -7.4039 24 1 -0.3628 -0.0962 -9.1640 25 1 -1.1246 -1.8807 -7.7095 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6265 -1.7293 1.2811 34 1 1.7285 -0.1726 2.1382 35 1 3.9170 -0.5713 3.3231 36 1 3.5857 -2.2430 2.8077 37 1 6.9264 -2.7220 1.4926 38 1 5.3429 -3.4988 1.7388 39 1 5.5352 -2.9361 -0.6168 40 1 6.0061 -1.2625 -0.2231 41 1 2.8970 -0.1694 -1.9879 42 1 3.9290 -1.3259 -2.8628 43 1 1.9097 -2.5178 -3.6693 44 1 0.8777 -1.3612 -2.7944 45 1 1.8176 0.4968 -4.1402 46 1 2.8499 -0.6592 -5.0156 47 1 1.3764 1.4128 -7.6797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072995310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:24 Heat of formation + Delta-G solvation = -80.504666 kcal Electronic energy + Delta-G solvation = -27514.544678 eV Core-core repulsion = 23826.433392 eV Total energy + Delta-G solvation = -3688.111286 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.96333 -38.31076 -36.20409 -35.53006 -34.88982 -34.18507 -32.31565 -31.82339 -28.14302 -27.63394 -26.97255 -26.24515 -23.81000 -23.28554 -21.63163 -20.55010 -20.25978 -18.94151 -17.54612 -16.71199 -16.48161 -16.37514 -15.91058 -15.52727 -15.44081 -15.11983 -14.77869 -14.53870 -14.38252 -13.98340 -13.47114 -13.32296 -12.73319 -12.60695 -12.36580 -12.30538 -12.11080 -12.04812 -11.92294 -11.78556 -11.55520 -11.50448 -11.30065 -11.14800 -10.95315 -10.89628 -10.68835 -10.61810 -10.47223 -10.25843 -10.03143 -9.87526 -9.63231 -9.40439 -9.19878 -8.82914 -8.41938 -6.06814 -4.09951 0.38011 2.61223 3.29091 3.35425 3.39236 3.58858 3.93519 4.19250 4.36720 4.41839 4.47601 4.81192 4.85565 4.94903 4.99608 5.09343 5.10771 5.18677 5.24393 5.29587 5.32128 5.34376 5.39234 5.50684 5.61722 5.72049 5.80517 5.88033 5.92004 5.97307 6.10752 6.18281 6.22730 6.31541 6.33595 6.43910 6.54449 6.61606 6.77198 6.85567 6.87417 7.55764 7.65550 7.91048 8.31410 8.96202 9.54831 11.04351 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.003833 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.885995 B = 7302.992349 C = 7830.064580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.167 4.167 4 C -0.148 4.148 5 C 0.119 3.881 6 H 0.085 0.915 7 C 0.055 3.945 8 O -0.380 6.380 9 C 0.052 3.948 10 C 0.082 3.918 11 N -1.000 6.000 12 S 2.584 3.416 13 O -0.938 6.938 14 O -0.969 6.969 15 C -0.618 4.618 16 C -0.102 4.102 17 C 0.032 3.968 18 C -0.525 4.525 19 H 0.058 0.942 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.134 0.866 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.021 0.979 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.876 -2.471 19.386 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 C -0.224 4.224 4 C -0.187 4.187 5 C 0.013 3.987 6 H 0.103 0.897 7 C -0.023 4.023 8 O -0.298 6.298 9 C -0.026 4.026 10 C -0.044 4.044 11 N -0.838 5.838 12 S 2.685 3.315 13 O -0.928 6.928 14 O -0.960 6.960 15 C -0.749 4.749 16 C -0.141 4.141 17 C -0.006 4.006 18 C -0.564 4.564 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.155 0.845 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.039 0.961 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.559 -3.052 19.487 20.786 hybrid contribution -0.478 0.491 -1.308 1.476 sum 6.081 -2.561 18.179 19.339 Atomic orbital electron populations 1.21678 0.94088 1.02682 1.00804 1.21599 0.98037 0.94019 0.97130 1.22170 1.00694 0.97311 1.02258 1.22850 0.91238 1.06075 0.98527 1.21925 0.96415 0.93009 0.87352 0.89742 1.22991 0.81822 1.01059 0.96422 1.87935 1.23281 1.58531 1.60068 1.22823 1.01189 0.90866 0.87765 1.22046 0.81317 1.01651 0.99377 1.57904 1.19973 1.61380 1.44500 1.06169 0.74558 0.75241 0.75572 1.93725 1.43479 1.86721 1.68848 1.93503 1.79792 1.38352 1.84318 1.30741 1.09706 1.17093 1.17365 1.21486 0.93379 1.02106 0.97132 1.19047 0.97525 0.93600 0.90453 1.21235 1.12168 1.17446 1.05506 0.92424 1.25008 0.96311 0.95027 0.97943 1.69958 1.36330 1.20961 1.26137 0.86577 0.82367 0.78785 0.80223 1.20557 1.21167 1.19745 0.93639 0.92776 0.91153 0.92543 0.92905 0.92101 0.92586 0.84849 0.91266 0.87871 0.92510 0.87695 0.92531 0.87989 0.90536 0.84475 0.85704 0.92103 0.91208 0.96111 0.96256 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.98 37.16 0.33 -1.49 16 2 C -0.09 -1.15 1.71 -90.62 -0.15 -1.31 16 3 C -0.17 -1.94 8.50 37.16 0.32 -1.62 16 4 C -0.15 -1.64 3.66 -26.73 -0.10 -1.74 16 5 C 0.12 1.24 3.00 -67.42 -0.20 1.04 16 6 H 0.08 0.84 6.13 -51.93 -0.32 0.52 16 7 C 0.06 0.52 6.28 37.31 0.23 0.75 16 8 O -0.38 -4.01 10.74 -35.23 -0.38 -4.39 16 9 C 0.05 0.47 6.97 37.10 0.26 0.73 16 10 C 0.08 0.82 6.63 -3.75 -0.02 0.80 16 11 N -1.00 -11.76 3.28 -106.26 -0.35 -12.11 16 12 S 2.58 37.92 4.74 -107.50 -0.51 37.41 16 13 O -0.94 -14.32 9.57 -57.54 -0.55 -14.87 16 14 O -0.97 -16.97 16.70 -57.54 -0.96 -17.93 16 15 C -0.62 -9.75 5.09 37.16 0.19 -9.57 16 16 C -0.10 -2.04 5.10 -26.73 -0.14 -2.17 16 17 C 0.03 0.81 4.97 -27.89 -0.14 0.67 16 18 C -0.53 -14.66 9.11 -34.44 -0.31 -14.97 16 19 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 22 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.01 7.20 -51.93 -0.37 0.63 16 29 H 0.06 0.80 1.29 -28.41 -0.04 0.77 16 30 H 0.05 0.56 6.33 -51.93 -0.33 0.23 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.13 1.69 5.37 -55.79 -0.30 1.39 16 34 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 1.03 6.96 -51.93 -0.36 0.67 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.14 2.01 6.01 -51.92 -0.31 1.70 16 42 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -32.77 361.97 -9.32 -42.09 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.91 Total: 0.91 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: 0.17 Total: -27.31 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.39 Total: -37.80 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -1.89 Total: -37.19 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 37.92 SS G_CDS: -0.51 Total: 37.41 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.77 -9.32 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072995310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.417 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds