Wall clock time and date at job start Tue Mar 31 2020 12:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47205 * 2 1 4 4 C 1.52998 * 109.47011 * 119.99910 * 2 1 3 5 5 C 1.53001 * 109.47150 * 176.51558 * 4 2 1 6 6 H 1.09000 * 109.68411 * 50.57843 * 5 4 2 7 7 C 1.53299 * 109.71372 * 171.11600 * 5 4 2 8 8 O 1.42960 * 109.22341 * 172.04584 * 7 5 4 9 9 C 1.42967 * 114.16474 * 297.41546 * 8 7 5 10 10 C 1.52880 * 109.29635 * 62.45117 * 9 8 7 11 11 N 1.47152 * 109.68025 * 290.05750 * 5 4 2 12 12 S 1.65595 * 120.98348 * 9.68535 * 11 5 4 13 13 O 1.42102 * 104.27701 * 336.92711 * 12 11 5 14 14 O 1.42106 * 104.27920 * 209.07313 * 12 11 5 15 15 C 1.81395 * 104.45291 * 93.00113 * 12 11 5 16 16 C 1.52998 * 109.47361 * 190.54068 * 15 12 11 17 17 C 1.52998 * 109.47445 * 179.97438 * 16 15 12 18 18 C 1.50697 * 109.47561 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99649 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00225 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00199 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00049 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47229 * 89.99911 * 22 20 18 24 24 H 1.48500 * 109.47143 * 210.00323 * 22 20 18 25 25 H 1.48504 * 109.47085 * 329.99877 * 22 20 18 26 26 H 1.09002 * 109.47224 * 300.00080 * 1 2 3 27 27 H 1.09003 * 109.46783 * 59.99980 * 1 2 3 28 28 H 1.08996 * 109.47339 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47224 * 239.99920 * 2 1 3 30 30 H 1.09001 * 109.47040 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47044 * 299.99853 * 3 2 1 32 32 H 1.09002 * 109.47095 * 59.99840 * 3 2 1 33 33 H 1.09000 * 109.47310 * 56.51585 * 4 2 1 34 34 H 1.09001 * 109.47625 * 296.51508 * 4 2 1 35 35 H 1.09004 * 109.51019 * 291.96570 * 7 5 4 36 36 H 1.08996 * 109.51178 * 52.06509 * 7 5 4 37 37 H 1.08996 * 109.51598 * 182.50838 * 9 8 7 38 38 H 1.09002 * 109.51131 * 302.66377 * 9 8 7 39 39 H 1.09007 * 109.61886 * 188.11784 * 10 9 8 40 40 H 1.08997 * 109.52364 * 67.69870 * 10 9 8 41 41 H 1.09004 * 109.46861 * 310.54000 * 15 12 11 42 42 H 1.08996 * 109.47553 * 70.53588 * 15 12 11 43 43 H 1.09004 * 109.47077 * 299.99799 * 16 15 12 44 44 H 1.09002 * 109.47289 * 60.00006 * 16 15 12 45 45 H 1.09004 * 109.46842 * 299.99972 * 17 16 15 46 46 H 1.09005 * 109.47340 * 59.99705 * 17 16 15 47 47 H 0.96997 * 120.00083 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5674 -0.7976 1.2062 6 1 3.9791 0.1918 1.0067 7 6 4.0973 -1.3162 2.5480 8 8 5.5016 -1.5597 2.4371 9 6 5.8475 -2.5670 1.4834 10 6 5.4063 -2.1168 0.0906 11 7 3.9873 -1.7314 0.1493 12 16 2.8942 -2.3359 -0.9378 13 8 1.6417 -2.2202 -0.2765 14 8 3.4201 -3.6073 -1.2935 15 6 2.9783 -1.1957 -2.3460 16 6 1.8285 -1.4915 -3.3112 17 6 1.8990 -0.5294 -4.4987 18 6 0.7670 -0.8212 -5.4496 19 1 0.0674 -1.6139 -5.2292 20 6 0.6243 -0.0761 -6.6009 21 7 1.4765 0.8889 -6.8695 22 14 -0.7786 -0.4383 -7.7800 23 1 -1.9635 0.3740 -7.4039 24 1 -0.3628 -0.0962 -9.1640 25 1 -1.1246 -1.8807 -7.7095 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6265 -1.7293 1.2811 34 1 1.7285 -0.1726 2.1382 35 1 3.9170 -0.5713 3.3231 36 1 3.5857 -2.2430 2.8077 37 1 6.9264 -2.7220 1.4926 38 1 5.3429 -3.4988 1.7388 39 1 5.5352 -2.9361 -0.6168 40 1 6.0061 -1.2625 -0.2231 41 1 2.8970 -0.1694 -1.9879 42 1 3.9290 -1.3259 -2.8628 43 1 1.9097 -2.5178 -3.6693 44 1 0.8777 -1.3612 -2.7944 45 1 1.8176 0.4968 -4.1402 46 1 2.8499 -0.6592 -5.0156 47 1 1.3764 1.4128 -7.6797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072995310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:23 Heat of formation + Delta-G solvation = -102.567610 kcal Electronic energy + Delta-G solvation = -27515.501399 eV Core-core repulsion = 23826.433392 eV Total energy + Delta-G solvation = -3689.068007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81995 -39.32310 -37.41104 -36.67321 -36.48840 -35.23930 -34.20450 -32.70801 -29.81756 -28.65319 -27.96133 -27.07460 -25.68045 -24.12613 -22.69736 -22.09568 -21.29210 -20.06317 -18.61305 -18.54964 -17.43609 -17.28883 -17.22058 -16.62341 -16.48932 -16.39551 -15.93631 -15.82199 -15.42420 -15.21473 -14.54611 -14.38856 -14.30155 -14.04882 -13.78701 -13.51350 -13.23743 -13.15732 -13.03627 -12.96989 -12.87754 -12.76552 -12.67516 -12.50040 -12.29837 -12.21815 -12.02139 -11.81575 -11.67482 -11.48652 -11.36619 -11.26892 -11.08027 -10.88378 -10.59209 -10.50456 -9.76223 -8.23941 -6.35170 -0.80045 1.38693 1.39436 1.50750 1.56907 2.38300 2.75060 2.90421 3.08141 3.09745 3.46289 3.65156 3.76797 3.81050 4.00387 4.10648 4.15288 4.17882 4.33674 4.34836 4.35247 4.43869 4.58438 4.63540 4.65561 4.72281 4.85153 4.86756 4.90728 4.93915 5.01352 5.02586 5.12011 5.15686 5.21164 5.31341 5.40376 5.44728 5.57632 5.59670 5.62385 5.77385 5.81084 6.16185 6.17629 6.80069 7.34274 8.87608 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.003833 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.885995 B = 7302.992349 C = 7830.064580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C -0.165 4.165 4 C -0.143 4.143 5 C 0.117 3.883 6 H 0.097 0.903 7 C 0.054 3.946 8 O -0.389 6.389 9 C 0.051 3.949 10 C 0.072 3.928 11 N -0.994 5.994 12 S 2.606 3.394 13 O -0.943 6.943 14 O -0.998 6.998 15 C -0.623 4.623 16 C -0.097 4.097 17 C 0.035 3.965 18 C -0.550 4.550 19 H 0.060 0.940 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.962 3.038 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.265 1.265 26 H 0.066 0.934 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.056 0.944 37 H 0.131 0.869 38 H 0.053 0.947 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.147 0.853 42 H 0.132 0.868 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.002 0.998 46 H -0.002 1.002 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.159 -2.350 21.107 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 C -0.222 4.222 4 C -0.182 4.182 5 C 0.012 3.988 6 H 0.114 0.886 7 C -0.024 4.024 8 O -0.308 6.308 9 C -0.027 4.027 10 C -0.053 4.053 11 N -0.834 5.834 12 S 2.705 3.295 13 O -0.933 6.933 14 O -0.988 6.988 15 C -0.752 4.752 16 C -0.136 4.136 17 C -0.003 4.003 18 C -0.588 4.588 19 H 0.078 0.922 20 C -0.194 4.194 21 N -0.570 5.570 22 Si 0.786 3.214 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.189 1.189 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.074 0.926 37 H 0.148 0.852 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.165 0.835 42 H 0.151 0.849 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.020 0.980 46 H 0.016 0.984 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.835 -2.933 21.190 22.458 hybrid contribution -0.535 0.481 -1.771 1.912 sum 6.300 -2.451 19.419 20.562 Atomic orbital electron populations 1.21681 0.94872 1.01813 1.00986 1.21651 0.97523 0.94991 0.97422 1.22147 1.01443 0.96311 1.02278 1.22740 0.91648 1.05261 0.98582 1.22105 0.95985 0.93237 0.87470 0.88572 1.23116 0.81351 1.01806 0.96099 1.87931 1.23780 1.58787 1.60256 1.22954 1.02721 0.90363 0.86684 1.22314 0.80257 1.02406 1.00294 1.57694 1.20420 1.61641 1.43620 1.05443 0.74632 0.74268 0.75110 1.93754 1.44541 1.86660 1.68386 1.93463 1.80508 1.39901 1.84947 1.30744 1.08127 1.18579 1.17742 1.21237 0.95503 1.00503 0.96332 1.18918 0.95689 0.93842 0.91897 1.21698 1.13028 1.17623 1.06479 0.92220 1.25920 0.98976 0.94728 0.99786 1.70076 1.38126 1.21901 1.26860 0.85499 0.79080 0.79009 0.77818 1.19621 1.20536 1.18882 0.91497 0.94560 0.92518 0.94273 0.91706 0.94041 0.90621 0.86318 0.88563 0.85375 0.92580 0.85162 0.92913 0.88297 0.88847 0.83531 0.84930 0.92340 0.91093 0.97989 0.98399 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.98 71.98 0.65 -2.96 16 2 C -0.10 -2.40 1.71 -10.79 -0.02 -2.42 16 3 C -0.16 -3.55 8.50 71.98 0.61 -2.94 16 4 C -0.14 -2.86 3.66 30.59 0.11 -2.75 16 5 C 0.12 2.14 3.00 44.97 0.14 2.28 16 6 H 0.10 1.58 6.13 -2.39 -0.01 1.56 16 7 C 0.05 0.85 6.28 72.08 0.45 1.30 16 8 O -0.39 -7.02 10.74 -148.98 -1.60 -8.62 16 9 C 0.05 0.80 6.97 71.94 0.50 1.31 16 10 C 0.07 1.32 6.63 86.21 0.57 1.89 16 11 N -0.99 -21.71 3.28 -490.09 -1.61 -23.32 16 12 S 2.61 75.46 4.74 -56.49 -0.27 75.20 16 13 O -0.94 -28.50 9.57 -127.65 -1.22 -29.72 16 14 O -1.00 -34.81 16.70 -127.65 -2.13 -36.94 16 15 C -0.62 -19.91 5.09 71.98 0.37 -19.54 16 16 C -0.10 -4.00 5.10 30.59 0.16 -3.84 16 17 C 0.03 1.82 4.97 29.85 0.15 1.96 16 18 C -0.55 -31.45 9.11 25.60 0.23 -31.22 16 19 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 20 C 0.00 0.24 5.46 84.65 0.46 0.70 16 21 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 22 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.63 7.20 -2.39 -0.02 1.61 16 29 H 0.04 1.11 1.29 -17.34 -0.02 1.08 16 30 H 0.06 1.22 6.33 -2.39 -0.02 1.21 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.12 2.81 5.37 -63.49 -0.34 2.47 16 34 H 0.10 1.42 8.13 -2.39 -0.02 1.40 16 35 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 1.88 6.96 -2.38 -0.02 1.86 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.15 4.35 6.01 -2.39 -0.01 4.33 16 42 H 0.13 3.93 8.14 -2.39 -0.02 3.91 16 43 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 44 H 0.07 2.86 8.03 -2.39 -0.02 2.84 16 45 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 46 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 47 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -71.10 361.97 0.46 -70.64 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.60 Total: 18.42 kcal Atomic # 6 Polarization: -60.61 SS G_CDS: 4.38 Total: -56.23 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -1.32 Total: -79.04 kcal Atomic # 8 Polarization: -70.32 SS G_CDS: -4.95 Total: -75.28 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 75.46 SS G_CDS: -0.27 Total: 75.20 kcal Total: -71.10 0.46 -70.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072995310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.924 kcal (2) G-P(sol) polarization free energy of solvation -71.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds