Wall clock time and date at job start Tue Mar 31 2020 12:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47347 * 2 1 4 4 C 1.53004 * 109.47272 * 304.99907 * 3 2 1 5 5 O 1.42899 * 109.47028 * 64.99763 * 3 2 1 6 6 C 1.53007 * 109.47039 * 184.99770 * 3 2 1 7 7 N 1.46500 * 109.46992 * 180.02562 * 6 3 2 8 8 C 1.34770 * 120.00149 * 179.97438 * 7 6 3 9 9 O 1.21722 * 119.99697 * 0.02562 * 8 7 6 10 10 C 1.46250 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.35031 * 119.99722 * 180.02562 * 10 8 7 12 12 C 1.46959 * 119.99896 * 180.27394 * 11 10 8 13 13 C 1.40027 * 120.10017 * 359.45143 * 12 11 10 14 14 C 1.37601 * 119.89863 * 179.78912 * 13 12 11 15 15 C 1.39178 * 120.09610 * 0.48118 * 14 13 12 16 16 O 1.35575 * 119.89259 * 179.76441 * 15 14 13 17 17 C 1.34788 * 116.99533 * 174.42515 * 16 15 14 18 18 H 1.08001 * 120.00124 * 5.05799 * 17 16 15 19 19 C 1.38720 * 119.99795 * 185.06035 * 17 16 15 20 20 N 1.31507 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47157 * 89.99783 * 21 19 17 23 23 H 1.48507 * 109.47385 * 209.99705 * 21 19 17 24 24 H 1.48501 * 109.47369 * 329.99939 * 21 19 17 25 25 C 1.39170 * 120.20621 * 359.74800 * 15 14 13 26 26 C 1.37600 * 120.10262 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.47188 * 300.00340 * 1 2 3 28 28 H 1.09002 * 109.46905 * 60.00186 * 1 2 3 29 29 H 1.08994 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47188 * 239.99660 * 2 1 3 31 31 H 1.09008 * 109.46742 * 120.00508 * 2 1 3 32 32 H 1.08999 * 109.46924 * 299.99991 * 4 3 2 33 33 H 1.09002 * 109.46644 * 59.99494 * 4 3 2 34 34 H 1.08994 * 109.46793 * 179.97438 * 4 3 2 35 35 H 0.96708 * 113.99912 * 60.00497 * 5 3 2 36 36 H 1.08993 * 109.46896 * 60.00372 * 6 3 2 37 37 H 1.08995 * 109.46915 * 300.00307 * 6 3 2 38 38 H 0.96999 * 119.99522 * 359.97438 * 7 6 3 39 39 H 1.07990 * 120.00180 * 359.97438 * 10 8 7 40 40 H 1.08000 * 120.00105 * 359.97438 * 11 10 8 41 41 H 1.08005 * 120.04947 * 359.97438 * 13 12 11 42 42 H 1.07995 * 119.95289 * 180.22906 * 14 13 12 43 43 H 0.97004 * 119.99419 * 180.02562 * 20 19 17 44 44 H 1.07998 * 119.95118 * 179.97438 * 25 15 14 45 45 H 1.07997 * 120.05056 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4300 2.1991 -1.1817 5 8 1.6620 2.0813 1.2210 6 6 3.5650 1.4442 -0.1257 7 7 4.0534 2.8254 -0.1251 8 6 5.3743 3.0731 -0.2261 9 8 6.1614 2.1492 -0.3183 10 6 5.8618 4.4519 -0.2260 11 6 7.1852 4.7001 -0.3278 12 6 7.6756 6.0854 -0.3217 13 6 6.7715 7.1500 -0.2220 14 6 7.2356 8.4454 -0.2123 15 6 8.6005 8.6985 -0.3115 16 8 9.0529 9.9765 -0.3063 17 6 10.3891 10.1526 -0.2885 18 1 11.0472 9.2993 -0.3616 19 6 10.9190 11.4297 -0.1764 20 7 10.1176 12.4686 -0.0878 21 14 12.7707 11.6736 -0.1510 22 1 13.2646 11.8594 -1.5392 23 1 13.1008 12.8752 0.6568 24 1 13.4191 10.4801 0.4493 25 6 9.5025 7.6437 -0.4155 26 6 9.0479 6.3450 -0.4214 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5140 0.8900 32 1 1.7184 1.7118 -2.1130 33 1 0.3437 2.1978 -1.0921 34 1 1.7931 3.2268 -1.1813 35 1 2.0142 1.6542 2.0139 36 1 3.8533 0.9569 -1.0570 37 1 3.9995 0.9051 0.7161 38 1 3.4260 3.5616 -0.0519 39 1 5.1634 5.2716 -0.1455 40 1 7.8837 3.8803 -0.4088 41 1 5.7117 6.9546 -0.1498 42 1 6.5393 9.2670 -0.1317 43 1 10.4882 13.3616 -0.0098 44 1 10.5608 7.8449 -0.4927 45 1 9.7486 5.5271 -0.5018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075225014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:41 Heat of formation + Delta-G solvation = -87.936788 kcal Electronic energy + Delta-G solvation = -25036.549435 eV Core-core repulsion = 21212.671916 eV Total energy + Delta-G solvation = -3823.877518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.99986 -39.19477 -38.59058 -36.87559 -34.41567 -33.60297 -33.19007 -32.28988 -30.42980 -29.98792 -28.43270 -27.18128 -25.66687 -24.21762 -22.69477 -22.09245 -20.80573 -20.58299 -19.36716 -18.21257 -17.28500 -17.12618 -16.82585 -16.00168 -15.63862 -15.35728 -14.92798 -14.76888 -14.63569 -14.38186 -13.99343 -13.87507 -13.79705 -13.36632 -13.03092 -12.85928 -12.66878 -12.58650 -12.57066 -12.43620 -12.08621 -11.92625 -11.75466 -11.71176 -11.38984 -11.12610 -11.07538 -10.97861 -10.67854 -10.53853 -10.40047 -9.77426 -9.60437 -9.49047 -9.13951 -8.84399 -8.37719 -7.10878 -6.64863 -4.19764 1.08000 2.14035 2.56567 3.04010 3.05052 3.09850 3.16258 3.58830 3.82535 3.84730 4.20741 4.36273 4.41437 4.51593 4.82211 4.92720 4.95770 5.04971 5.06243 5.15235 5.27375 5.29370 5.40438 5.45507 5.49647 5.51386 5.54375 5.58227 5.66450 5.67794 5.81279 5.90526 6.01887 6.12588 6.34475 6.47530 6.49854 6.61908 6.79739 6.92411 7.13565 7.22294 7.24224 7.28732 7.57059 7.64454 7.80491 8.35038 8.79938 9.46953 10.51760 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.038944 B = 0.001768 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.809536 B =15830.895535 C =16340.868064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.147 4.147 3 C 0.120 3.880 4 C -0.143 4.143 5 O -0.554 6.554 6 C 0.096 3.904 7 N -0.726 5.726 8 C 0.555 3.445 9 O -0.562 6.562 10 C -0.282 4.282 11 C 0.038 3.962 12 C -0.199 4.199 13 C -0.043 4.043 14 C -0.199 4.199 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.393 4.393 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.265 1.265 25 C -0.242 4.242 26 C -0.035 4.035 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.378 0.622 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.404 0.596 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.274 0.726 44 H 0.131 0.869 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.031 -19.702 0.117 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.079 3.921 4 C -0.200 4.200 5 O -0.360 6.360 6 C -0.028 4.028 7 N -0.379 5.379 8 C 0.347 3.653 9 O -0.443 6.443 10 C -0.303 4.303 11 C 0.018 3.982 12 C -0.200 4.200 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.063 6.063 17 C -0.469 4.469 18 H 0.115 0.885 19 C -0.165 4.165 20 N -0.485 5.485 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.190 1.190 25 C -0.261 4.261 26 C -0.053 4.053 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.225 0.775 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.239 0.761 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.084 0.916 44 H 0.149 0.851 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.881 -19.438 -0.339 24.483 hybrid contribution 0.943 0.054 0.424 1.035 sum -13.938 -19.384 0.085 23.875 Atomic orbital electron populations 1.21758 0.94734 1.01551 1.02684 1.22130 0.97470 0.95826 1.03093 1.21489 0.91687 0.92660 0.86302 1.21827 1.01832 1.00762 0.95599 1.86558 1.76847 1.57303 1.15303 1.21951 0.93599 0.84490 1.02797 1.45756 1.07773 1.08180 1.76198 1.18435 0.81579 0.89937 0.75378 1.90770 1.55512 1.46752 1.51296 1.22426 0.97100 0.94429 1.16376 1.22282 0.95006 0.95122 0.85779 1.18464 0.93515 0.91700 1.16295 1.20890 0.98223 0.91359 0.95641 1.20154 0.93092 0.96731 1.11882 1.19614 0.92847 0.85215 0.91287 1.83907 1.25624 1.20591 1.76225 1.21479 0.78633 0.94546 1.52242 0.88539 1.25393 1.00945 0.94154 0.95967 1.70016 1.35655 0.99056 1.43730 0.85646 0.79901 0.78723 0.78845 1.19641 1.20048 1.18954 1.21098 1.00566 0.92215 1.12268 1.20987 0.93979 0.95961 0.94420 0.92012 0.92211 0.92807 0.90758 0.91383 0.90928 0.91114 0.91697 0.77466 0.90880 0.91546 0.76064 0.85894 0.85973 0.86395 0.86119 0.91607 0.85121 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.32 37.16 0.35 -0.44 16 2 C -0.15 -0.79 5.20 -26.73 -0.14 -0.93 16 3 C 0.12 0.79 0.74 -90.62 -0.07 0.73 16 4 C -0.14 -0.94 8.18 37.16 0.30 -0.64 16 5 O -0.55 -3.98 12.26 -35.23 -0.43 -4.41 16 6 C 0.10 0.85 4.78 -4.04 -0.02 0.83 16 7 N -0.73 -7.63 5.14 -61.76 -0.32 -7.95 16 8 C 0.55 7.86 7.74 -13.04 -0.10 7.75 16 9 O -0.56 -9.88 16.23 5.17 0.08 -9.79 16 10 C -0.28 -3.93 9.41 -37.50 -0.35 -4.28 16 11 C 0.04 0.58 9.45 -37.19 -0.35 0.23 16 12 C -0.20 -3.42 5.87 -105.03 -0.62 -4.03 16 13 C -0.04 -0.74 9.40 -39.14 -0.37 -1.11 16 14 C -0.20 -4.01 9.97 -39.47 -0.39 -4.40 16 15 C 0.17 3.85 6.66 -38.89 -0.26 3.59 16 16 O -0.16 -4.42 9.74 0.70 0.01 -4.42 16 17 C -0.39 -10.48 9.48 30.91 0.29 -10.19 16 18 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.85 -23.86 13.67 55.48 0.76 -23.10 16 21 Si 0.94 19.55 29.55 -169.99 -5.02 14.52 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 C -0.24 -5.04 9.14 -39.47 -0.36 -5.40 16 26 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16 27 H 0.06 0.36 7.82 -51.93 -0.41 -0.04 16 28 H 0.06 0.31 6.35 -51.93 -0.33 -0.02 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.44 6.34 -51.93 -0.33 0.11 16 34 H 0.06 0.46 6.86 -51.93 -0.36 0.10 16 35 H 0.38 1.74 9.05 45.56 0.41 2.15 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.40 3.64 7.17 -40.82 -0.29 3.35 16 39 H 0.12 1.49 6.06 -52.49 -0.32 1.17 16 40 H 0.12 1.87 7.52 -52.49 -0.39 1.48 16 41 H 0.12 1.66 6.16 -52.48 -0.32 1.34 16 42 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.13 2.69 5.62 -52.49 -0.29 2.39 16 45 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -31.56 375.96 -7.24 -38.80 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.42 Total: 8.98 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -2.56 Total: -18.29 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.44 Total: -31.06 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.34 Total: -18.62 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.56 -7.24 -38.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075225014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.132 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds