Wall clock time and date at job start Tue Mar 31 2020 12:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47347 * 2 1 4 4 C 1.53004 * 109.47272 * 304.99907 * 3 2 1 5 5 O 1.42899 * 109.47028 * 64.99763 * 3 2 1 6 6 C 1.53007 * 109.47039 * 184.99770 * 3 2 1 7 7 N 1.46500 * 109.46992 * 180.02562 * 6 3 2 8 8 C 1.34770 * 120.00149 * 179.97438 * 7 6 3 9 9 O 1.21722 * 119.99697 * 0.02562 * 8 7 6 10 10 C 1.46250 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.35031 * 119.99722 * 180.02562 * 10 8 7 12 12 C 1.46959 * 119.99896 * 180.27394 * 11 10 8 13 13 C 1.40027 * 120.10017 * 359.45143 * 12 11 10 14 14 C 1.37601 * 119.89863 * 179.78912 * 13 12 11 15 15 C 1.39178 * 120.09610 * 0.48118 * 14 13 12 16 16 O 1.35575 * 119.89259 * 179.76441 * 15 14 13 17 17 C 1.34788 * 116.99533 * 174.42515 * 16 15 14 18 18 H 1.08001 * 120.00124 * 5.05799 * 17 16 15 19 19 C 1.38720 * 119.99795 * 185.06035 * 17 16 15 20 20 N 1.31507 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47157 * 89.99783 * 21 19 17 23 23 H 1.48507 * 109.47385 * 209.99705 * 21 19 17 24 24 H 1.48501 * 109.47369 * 329.99939 * 21 19 17 25 25 C 1.39170 * 120.20621 * 359.74800 * 15 14 13 26 26 C 1.37600 * 120.10262 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.47188 * 300.00340 * 1 2 3 28 28 H 1.09002 * 109.46905 * 60.00186 * 1 2 3 29 29 H 1.08994 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47188 * 239.99660 * 2 1 3 31 31 H 1.09008 * 109.46742 * 120.00508 * 2 1 3 32 32 H 1.08999 * 109.46924 * 299.99991 * 4 3 2 33 33 H 1.09002 * 109.46644 * 59.99494 * 4 3 2 34 34 H 1.08994 * 109.46793 * 179.97438 * 4 3 2 35 35 H 0.96708 * 113.99912 * 60.00497 * 5 3 2 36 36 H 1.08993 * 109.46896 * 60.00372 * 6 3 2 37 37 H 1.08995 * 109.46915 * 300.00307 * 6 3 2 38 38 H 0.96999 * 119.99522 * 359.97438 * 7 6 3 39 39 H 1.07990 * 120.00180 * 359.97438 * 10 8 7 40 40 H 1.08000 * 120.00105 * 359.97438 * 11 10 8 41 41 H 1.08005 * 120.04947 * 359.97438 * 13 12 11 42 42 H 1.07995 * 119.95289 * 180.22906 * 14 13 12 43 43 H 0.97004 * 119.99419 * 180.02562 * 20 19 17 44 44 H 1.07998 * 119.95118 * 179.97438 * 25 15 14 45 45 H 1.07997 * 120.05056 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4300 2.1991 -1.1817 5 8 1.6620 2.0813 1.2210 6 6 3.5650 1.4442 -0.1257 7 7 4.0534 2.8254 -0.1251 8 6 5.3743 3.0731 -0.2261 9 8 6.1614 2.1492 -0.3183 10 6 5.8618 4.4519 -0.2260 11 6 7.1852 4.7001 -0.3278 12 6 7.6756 6.0854 -0.3217 13 6 6.7715 7.1500 -0.2220 14 6 7.2356 8.4454 -0.2123 15 6 8.6005 8.6985 -0.3115 16 8 9.0529 9.9765 -0.3063 17 6 10.3891 10.1526 -0.2885 18 1 11.0472 9.2993 -0.3616 19 6 10.9190 11.4297 -0.1764 20 7 10.1176 12.4686 -0.0878 21 14 12.7707 11.6736 -0.1510 22 1 13.2646 11.8594 -1.5392 23 1 13.1008 12.8752 0.6568 24 1 13.4191 10.4801 0.4493 25 6 9.5025 7.6437 -0.4155 26 6 9.0479 6.3450 -0.4214 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5140 0.8900 32 1 1.7184 1.7118 -2.1130 33 1 0.3437 2.1978 -1.0921 34 1 1.7931 3.2268 -1.1813 35 1 2.0142 1.6542 2.0139 36 1 3.8533 0.9569 -1.0570 37 1 3.9995 0.9051 0.7161 38 1 3.4260 3.5616 -0.0519 39 1 5.1634 5.2716 -0.1455 40 1 7.8837 3.8803 -0.4088 41 1 5.7117 6.9546 -0.1498 42 1 6.5393 9.2670 -0.1317 43 1 10.4882 13.3616 -0.0098 44 1 10.5608 7.8449 -0.4927 45 1 9.7486 5.5271 -0.5018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075225014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:40 Heat of formation + Delta-G solvation = -109.831247 kcal Electronic energy + Delta-G solvation = -25037.498850 eV Core-core repulsion = 21212.671916 eV Total energy + Delta-G solvation = -3824.826933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.00884 -40.74326 -39.42699 -38.46910 -35.32336 -34.73506 -34.14809 -33.97022 -31.97112 -30.70514 -29.65702 -28.03614 -27.42261 -25.12172 -23.91648 -23.49289 -21.96514 -21.29842 -20.62807 -19.77800 -18.86746 -18.34650 -17.64509 -16.69120 -16.60187 -16.51705 -16.31929 -15.96774 -15.75057 -15.66255 -15.59699 -15.12958 -14.70046 -14.63853 -14.54200 -14.10627 -13.60072 -13.44250 -13.35108 -13.26707 -13.15282 -13.04463 -12.89878 -12.70507 -12.61777 -12.55304 -12.21239 -12.12833 -11.81411 -11.47605 -11.21927 -11.15241 -11.11362 -10.78065 -10.58574 -10.07675 -9.89465 -8.68175 -8.52142 -6.18376 -0.24880 0.58314 1.13469 1.35995 1.46027 1.53173 2.15438 2.24966 2.36872 2.86455 3.17723 3.33431 3.42346 3.60847 3.79898 3.86828 3.92538 3.94910 4.08563 4.29515 4.34257 4.35569 4.47477 4.54762 4.63313 4.67600 4.70032 4.80306 4.94430 4.95545 5.01794 5.03446 5.07982 5.15143 5.19467 5.27628 5.33250 5.36702 5.44995 5.48710 5.58764 5.63695 5.81304 5.97298 6.10320 6.58118 6.81320 6.92178 7.27499 7.69165 8.69867 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.038944 B = 0.001768 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.809536 B =15830.895535 C =16340.868064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.129 3.871 4 C -0.147 4.147 5 O -0.565 6.565 6 C 0.094 3.906 7 N -0.709 5.709 8 C 0.549 3.451 9 O -0.596 6.596 10 C -0.247 4.247 11 C 0.016 3.984 12 C -0.171 4.171 13 C -0.038 4.038 14 C -0.207 4.207 15 C 0.130 3.870 16 O -0.220 6.220 17 C -0.418 4.418 18 H 0.106 0.894 19 C -0.018 4.018 20 N -0.913 5.913 21 Si 1.019 2.981 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.249 4.249 26 C -0.040 4.040 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.389 0.611 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.414 0.586 39 H 0.149 0.851 40 H 0.125 0.875 41 H 0.159 0.841 42 H 0.123 0.877 43 H 0.275 0.725 44 H 0.125 0.875 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.553 -22.989 0.184 28.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.088 3.912 4 C -0.204 4.204 5 O -0.373 6.373 6 C -0.030 4.030 7 N -0.360 5.360 8 C 0.340 3.660 9 O -0.480 6.480 10 C -0.267 4.267 11 C -0.004 4.004 12 C -0.172 4.172 13 C -0.056 4.056 14 C -0.226 4.226 15 C 0.078 3.922 16 O -0.125 6.125 17 C -0.494 4.494 18 H 0.123 0.877 19 C -0.217 4.217 20 N -0.550 5.550 21 Si 0.838 3.162 22 H -0.188 1.188 23 H -0.196 1.196 24 H -0.176 1.176 25 C -0.268 4.268 26 C -0.058 4.058 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.238 0.762 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.252 0.748 39 H 0.167 0.833 40 H 0.143 0.857 41 H 0.176 0.824 42 H 0.141 0.859 43 H 0.084 0.916 44 H 0.143 0.857 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.469 -22.797 -0.266 28.125 hybrid contribution 0.989 0.513 0.412 1.188 sum -15.481 -22.284 0.146 27.134 Atomic orbital electron populations 1.21741 0.94545 1.01909 1.02366 1.22117 0.97528 0.94944 1.03713 1.21404 0.89971 0.93508 0.86305 1.21879 1.02120 1.00502 0.95885 1.86540 1.76997 1.57832 1.15921 1.22108 0.95131 0.83217 1.02566 1.45684 1.06757 1.09541 1.74024 1.18522 0.82467 0.89565 0.75430 1.90773 1.56651 1.47667 1.52907 1.22761 0.96989 0.95229 1.11771 1.22170 0.95886 0.93883 0.88429 1.18783 0.93225 0.92779 1.12378 1.21284 1.00314 0.89849 0.94129 1.20420 0.92098 0.98349 1.11744 1.20188 0.94523 0.84919 0.92618 1.83888 1.25829 1.22614 1.80137 1.21908 0.79164 0.95300 1.52979 0.87695 1.26609 1.06106 0.93547 0.95427 1.70151 1.37940 0.99556 1.47359 0.84581 0.73485 0.78956 0.79195 1.18753 1.19561 1.17623 1.21202 1.00186 0.93025 1.12387 1.21317 0.95240 0.95495 0.93744 0.92675 0.92166 0.92160 0.90288 0.90704 0.90282 0.90760 0.92175 0.76198 0.91221 0.91705 0.74843 0.83343 0.85685 0.82373 0.85941 0.91599 0.85717 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.32 71.98 0.67 -0.53 16 2 C -0.14 -1.16 5.20 30.59 0.16 -1.00 16 3 C 0.13 1.34 0.74 -10.79 -0.01 1.34 16 4 C -0.15 -1.52 8.18 71.98 0.59 -0.93 16 5 O -0.57 -6.46 12.26 -148.98 -1.83 -8.29 16 6 C 0.09 1.39 4.78 86.38 0.41 1.80 16 7 N -0.71 -12.36 5.14 -467.51 -2.41 -14.76 16 8 C 0.55 13.56 7.74 86.33 0.67 14.23 16 9 O -0.60 -19.31 16.23 -4.42 -0.07 -19.39 16 10 C -0.25 -5.75 9.41 23.62 0.22 -5.53 16 11 C 0.02 0.44 9.45 23.82 0.23 0.66 16 12 C -0.17 -5.36 5.87 -20.13 -0.12 -5.48 16 13 C -0.04 -1.20 9.40 22.55 0.21 -0.99 16 14 C -0.21 -8.31 9.97 22.34 0.22 -8.08 16 15 C 0.13 6.21 6.66 22.72 0.15 6.36 16 16 O -0.22 -12.76 9.74 -20.39 -0.20 -12.96 16 17 C -0.42 -23.57 9.48 67.94 0.64 -22.92 16 18 H 0.11 5.41 5.18 -2.91 -0.02 5.39 16 19 C -0.02 -1.00 5.49 84.86 0.47 -0.53 16 20 N -0.91 -54.43 13.67 21.62 0.30 -54.13 16 21 Si 1.02 41.54 29.55 68.60 2.03 43.57 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 24 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 25 C -0.25 -10.47 9.14 22.34 0.20 -10.27 16 26 C -0.04 -1.36 9.78 22.55 0.22 -1.14 16 27 H 0.05 0.53 7.82 -2.39 -0.02 0.51 16 28 H 0.06 0.48 6.35 -2.39 -0.02 0.47 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.73 6.34 -2.39 -0.02 0.72 16 34 H 0.06 0.67 6.86 -2.39 -0.02 0.65 16 35 H 0.39 2.46 9.05 -74.05 -0.67 1.79 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.41 5.75 7.17 -92.71 -0.66 5.09 16 39 H 0.15 2.70 6.06 -2.92 -0.02 2.68 16 40 H 0.13 3.41 7.52 -2.91 -0.02 3.39 16 41 H 0.16 3.67 6.16 -2.91 -0.02 3.65 16 42 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 43 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.13 5.30 5.62 -2.91 -0.02 5.28 16 45 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -72.93 375.96 2.46 -70.47 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -0.30 Total: 28.50 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 4.94 Total: -33.01 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -2.11 Total: -68.89 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -2.10 Total: -40.63 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -72.93 2.46 -70.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075225014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.358 kcal (2) G-P(sol) polarization free energy of solvation -72.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds