Wall clock time and date at job start Tue Mar 31 2020 12:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47087 * 2 1 4 4 C 1.52996 * 109.47313 * 119.99875 * 2 1 3 5 5 C 1.53000 * 109.47124 * 175.00066 * 4 2 1 6 6 O 1.42905 * 109.47085 * 180.02562 * 5 4 2 7 7 C 1.42895 * 113.99783 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.78515 * 26.75221 * 7 6 5 9 9 C 1.55405 * 110.69130 * 263.36280 * 7 6 5 10 10 C 1.54914 * 101.66697 * 277.05126 * 9 7 6 11 11 N 1.47426 * 104.82992 * 323.07703 * 10 9 7 12 12 S 1.65602 * 125.64425 * 204.09243 * 11 10 9 13 13 O 1.42094 * 104.27897 * 26.11478 * 12 11 10 14 14 O 1.42106 * 104.27596 * 153.96674 * 12 11 10 15 15 C 1.81399 * 104.44836 * 270.03788 * 12 11 10 16 16 C 1.53003 * 109.47039 * 180.02562 * 15 12 11 17 17 C 1.50695 * 109.47176 * 180.02562 * 16 15 12 18 18 H 1.08003 * 120.00127 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99914 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00019 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99679 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46883 * 90.00110 * 21 19 17 23 23 H 1.48500 * 109.46570 * 209.99876 * 21 19 17 24 24 H 1.48495 * 109.47283 * 330.00134 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 11 10 9 26 26 H 1.08994 * 109.46983 * 299.99877 * 1 2 3 27 27 H 1.09003 * 109.47183 * 60.00122 * 1 2 3 28 28 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47187 * 240.00064 * 2 1 3 30 30 H 1.08994 * 109.47108 * 60.00200 * 3 2 1 31 31 H 1.08993 * 109.46993 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47009 * 299.99984 * 3 2 1 33 33 H 1.09003 * 109.47102 * 55.00123 * 4 2 1 34 34 H 1.08992 * 109.47095 * 295.00104 * 4 2 1 35 35 H 1.08989 * 109.47561 * 59.99973 * 5 4 2 36 36 H 1.09004 * 109.46979 * 299.99713 * 5 4 2 37 37 H 1.09000 * 110.89538 * 158.97930 * 9 7 6 38 38 H 1.09000 * 111.06973 * 35.19773 * 9 7 6 39 39 H 1.08999 * 110.37121 * 204.23438 * 10 9 7 40 40 H 1.09001 * 110.45739 * 81.96050 * 10 9 7 41 41 H 1.09001 * 109.47317 * 300.00148 * 15 12 11 42 42 H 1.09001 * 109.46991 * 60.00527 * 15 12 11 43 43 H 1.09001 * 109.47038 * 300.00136 * 16 15 12 44 44 H 1.09000 * 109.46843 * 59.99776 * 16 15 12 45 45 H 0.97001 * 119.99814 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.88241 * 118.36067 * 25 11 10 47 47 H 1.09000 * 109.88049 * 239.37196 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1879 6 8 4.0412 -1.5051 2.3544 7 6 5.4611 -1.6604 2.3969 8 1 5.9534 -0.8742 1.8245 9 6 5.8756 -3.0651 1.8774 10 6 5.6785 -3.9376 3.1422 11 7 6.0999 -3.0778 4.2632 12 16 6.6351 -3.6080 5.7379 13 8 7.1688 -4.8982 5.4739 14 8 7.4643 -2.5547 6.2093 15 6 5.1322 -3.7348 6.7459 16 6 5.4991 -4.2209 8.1495 17 6 4.2506 -4.3268 8.9867 18 1 3.2913 -4.0733 8.5602 19 6 4.3328 -4.7484 10.2969 20 7 5.5009 -5.0577 10.8161 21 14 2.7850 -4.8804 11.3344 22 1 2.2089 -6.2418 11.1929 23 1 3.1215 -4.6309 12.7591 24 1 1.7944 -3.8736 10.8760 25 6 5.9657 -1.6717 3.8552 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1583 2.1369 35 1 3.9995 0.1675 1.1420 36 1 3.8532 -1.3940 0.3002 37 1 6.9178 -3.0696 1.5582 38 1 5.2206 -3.3935 1.0704 39 1 6.3052 -4.8279 3.0905 40 1 4.6309 -4.2179 3.2522 41 1 4.6564 -2.7565 6.8134 42 1 4.4438 -4.4427 6.2843 43 1 5.9752 -5.1991 8.0824 44 1 6.1874 -3.5127 8.6108 45 1 5.5587 -5.3546 11.7377 46 1 5.2473 -1.1656 4.5001 47 1 6.9335 -1.1740 3.9165 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081074600.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:01 Heat of formation + Delta-G solvation = -142.437538 kcal Electronic energy + Delta-G solvation = -25245.425426 eV Core-core repulsion = 21554.628529 eV Total energy + Delta-G solvation = -3690.796897 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.41135 -37.45543 -36.56990 -35.85744 -35.39288 -33.85011 -31.11808 -30.64450 -29.66628 -28.40868 -27.55493 -25.55149 -23.52198 -22.67034 -21.42424 -21.27837 -20.27197 -18.59327 -17.60030 -17.30168 -16.50298 -16.13103 -15.70757 -15.48809 -15.21210 -14.78047 -14.57776 -14.49477 -14.12128 -13.80920 -13.56495 -13.33864 -12.89120 -12.84183 -12.60434 -12.48297 -12.31495 -12.03363 -11.79565 -11.71311 -11.63278 -11.55316 -11.51390 -11.25729 -11.14307 -11.05556 -11.03620 -10.93641 -10.92689 -10.83446 -10.39200 -10.33874 -9.76421 -9.70600 -9.28632 -8.69694 -8.47628 -6.09754 -4.14996 0.77809 3.08095 3.28250 3.32280 3.34195 3.37506 4.24712 4.32754 4.36496 4.42205 4.47706 4.52349 4.61972 4.70867 4.88239 4.89489 5.07591 5.10403 5.18719 5.25378 5.25860 5.28109 5.40593 5.44306 5.49193 5.51859 5.54752 5.61889 5.66064 5.68651 5.70838 5.77045 5.80433 5.82735 5.95521 5.96471 6.01862 6.19165 6.51698 6.54612 7.03052 7.33343 7.39490 7.83700 8.21025 8.88476 9.49513 11.01341 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.002972 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.135304 B = 9419.871445 C =11144.854343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.116 4.116 5 C 0.059 3.941 6 O -0.372 6.372 7 C 0.079 3.921 8 H 0.080 0.920 9 C -0.149 4.149 10 C 0.121 3.879 11 N -1.018 6.018 12 S 2.608 3.392 13 O -0.962 6.962 14 O -0.963 6.963 15 C -0.588 4.588 16 C 0.028 3.972 17 C -0.519 4.519 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.891 5.891 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.123 3.877 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.265 0.735 46 H 0.076 0.924 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 10.366 -24.856 27.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.209 4.209 4 C -0.153 4.153 5 C -0.017 4.017 6 O -0.291 6.291 7 C 0.020 3.980 8 H 0.098 0.902 9 C -0.188 4.188 10 C -0.004 4.004 11 N -0.855 5.855 12 S 2.708 3.292 13 O -0.953 6.953 14 O -0.954 6.954 15 C -0.721 4.721 16 C -0.011 4.011 17 C -0.558 4.558 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.002 4.002 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.095 0.905 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.331 10.042 -24.281 26.630 hybrid contribution -1.369 0.048 0.476 1.450 sum -5.700 10.090 -23.805 26.476 Atomic orbital electron populations 1.21828 0.94792 1.01964 1.01895 1.21051 0.96091 0.96298 0.97834 1.21934 1.01092 0.95941 1.01957 1.21592 0.93552 1.01677 0.98496 1.22637 0.95263 0.95802 0.88004 1.87982 1.20674 1.78333 1.42078 1.23148 0.81851 0.96872 0.96145 0.90198 1.23286 1.02259 0.95526 0.97771 1.21929 1.00238 0.93702 0.84581 1.58870 1.83804 1.13100 1.29689 1.05235 0.77685 0.73669 0.72644 1.93527 1.77307 1.41114 1.83345 1.93529 1.64920 1.56987 1.79930 1.30476 1.18433 1.10161 1.13050 1.18968 0.98970 0.97242 0.85938 1.21015 0.92824 1.45849 0.96157 0.92031 1.25074 0.96446 0.95091 0.97915 1.69958 1.23545 1.44561 1.14871 0.86463 0.82863 0.78514 0.79410 1.20472 1.21015 1.19742 1.21740 1.01112 0.82819 0.94562 0.92469 0.92644 0.92525 0.91175 0.92409 0.92536 0.92719 0.90989 0.90906 0.93099 0.93510 0.89839 0.89779 0.89905 0.91327 0.86254 0.86256 0.94875 0.94861 0.92556 0.90526 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.16 0.34 -0.51 16 2 C -0.09 -0.56 2.92 -90.62 -0.26 -0.83 16 3 C -0.15 -0.85 8.95 37.16 0.33 -0.52 16 4 C -0.12 -0.87 5.05 -26.73 -0.14 -1.00 16 5 C 0.06 0.46 5.53 37.16 0.21 0.67 16 6 O -0.37 -3.94 10.07 -35.23 -0.35 -4.30 16 7 C 0.08 0.77 3.47 -24.76 -0.09 0.68 16 8 H 0.08 0.59 7.83 -51.93 -0.41 0.18 16 9 C -0.15 -1.38 6.81 -24.44 -0.17 -1.55 16 10 C 0.12 1.48 7.07 -2.53 -0.02 1.46 16 11 N -1.02 -14.85 3.62 -111.42 -0.40 -15.26 16 12 S 2.61 49.18 5.65 -107.50 -0.61 48.57 16 13 O -0.96 -20.55 17.28 -57.54 -0.99 -21.55 16 14 O -0.96 -20.56 17.60 -57.54 -1.01 -21.57 16 15 C -0.59 -11.84 6.12 37.16 0.23 -11.61 16 16 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 17 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 18 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 21 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.12 1.52 6.65 -3.07 -0.02 1.50 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.30 6.57 -51.93 -0.34 -0.04 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.35 6.54 -51.94 -0.34 0.01 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.03 7.67 -51.93 -0.40 0.63 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.12 2.21 8.14 -51.92 -0.42 1.78 16 42 H 0.12 2.20 8.14 -51.92 -0.42 1.78 16 43 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -34.99 390.82 -10.53 -45.53 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -8.63 Total: -3.12 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -0.13 Total: -24.57 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.33 Total: -41.41 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -2.36 Total: -47.42 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 49.18 SS G_CDS: -0.61 Total: 48.57 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.99 -10.53 -45.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081074600.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.911 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds