Wall clock time and date at job start Tue Mar 31 2020 12:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47087 * 2 1 4 4 C 1.52996 * 109.47313 * 119.99875 * 2 1 3 5 5 C 1.53000 * 109.47124 * 175.00066 * 4 2 1 6 6 O 1.42905 * 109.47085 * 180.02562 * 5 4 2 7 7 C 1.42895 * 113.99783 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.78515 * 26.75221 * 7 6 5 9 9 C 1.55405 * 110.69130 * 263.36280 * 7 6 5 10 10 C 1.54914 * 101.66697 * 277.05126 * 9 7 6 11 11 N 1.47426 * 104.82992 * 323.07703 * 10 9 7 12 12 S 1.65602 * 125.64425 * 204.09243 * 11 10 9 13 13 O 1.42094 * 104.27897 * 26.11478 * 12 11 10 14 14 O 1.42106 * 104.27596 * 153.96674 * 12 11 10 15 15 C 1.81399 * 104.44836 * 270.03788 * 12 11 10 16 16 C 1.53003 * 109.47039 * 180.02562 * 15 12 11 17 17 C 1.50695 * 109.47176 * 180.02562 * 16 15 12 18 18 H 1.08003 * 120.00127 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99914 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00019 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99679 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46883 * 90.00110 * 21 19 17 23 23 H 1.48500 * 109.46570 * 209.99876 * 21 19 17 24 24 H 1.48495 * 109.47283 * 330.00134 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 11 10 9 26 26 H 1.08994 * 109.46983 * 299.99877 * 1 2 3 27 27 H 1.09003 * 109.47183 * 60.00122 * 1 2 3 28 28 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47187 * 240.00064 * 2 1 3 30 30 H 1.08994 * 109.47108 * 60.00200 * 3 2 1 31 31 H 1.08993 * 109.46993 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47009 * 299.99984 * 3 2 1 33 33 H 1.09003 * 109.47102 * 55.00123 * 4 2 1 34 34 H 1.08992 * 109.47095 * 295.00104 * 4 2 1 35 35 H 1.08989 * 109.47561 * 59.99973 * 5 4 2 36 36 H 1.09004 * 109.46979 * 299.99713 * 5 4 2 37 37 H 1.09000 * 110.89538 * 158.97930 * 9 7 6 38 38 H 1.09000 * 111.06973 * 35.19773 * 9 7 6 39 39 H 1.08999 * 110.37121 * 204.23438 * 10 9 7 40 40 H 1.09001 * 110.45739 * 81.96050 * 10 9 7 41 41 H 1.09001 * 109.47317 * 300.00148 * 15 12 11 42 42 H 1.09001 * 109.46991 * 60.00527 * 15 12 11 43 43 H 1.09001 * 109.47038 * 300.00136 * 16 15 12 44 44 H 1.09000 * 109.46843 * 59.99776 * 16 15 12 45 45 H 0.97001 * 119.99814 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.88241 * 118.36067 * 25 11 10 47 47 H 1.09000 * 109.88049 * 239.37196 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1879 6 8 4.0412 -1.5051 2.3544 7 6 5.4611 -1.6604 2.3969 8 1 5.9534 -0.8742 1.8245 9 6 5.8756 -3.0651 1.8774 10 6 5.6785 -3.9376 3.1422 11 7 6.0999 -3.0778 4.2632 12 16 6.6351 -3.6080 5.7379 13 8 7.1688 -4.8982 5.4739 14 8 7.4643 -2.5547 6.2093 15 6 5.1322 -3.7348 6.7459 16 6 5.4991 -4.2209 8.1495 17 6 4.2506 -4.3268 8.9867 18 1 3.2913 -4.0733 8.5602 19 6 4.3328 -4.7484 10.2969 20 7 5.5009 -5.0577 10.8161 21 14 2.7850 -4.8804 11.3344 22 1 2.2089 -6.2418 11.1929 23 1 3.1215 -4.6309 12.7591 24 1 1.7944 -3.8736 10.8760 25 6 5.9657 -1.6717 3.8552 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1583 2.1369 35 1 3.9995 0.1675 1.1420 36 1 3.8532 -1.3940 0.3002 37 1 6.9178 -3.0696 1.5582 38 1 5.2206 -3.3935 1.0704 39 1 6.3052 -4.8279 3.0905 40 1 4.6309 -4.2179 3.2522 41 1 4.6564 -2.7565 6.8134 42 1 4.4438 -4.4427 6.2843 43 1 5.9752 -5.1991 8.0824 44 1 6.1874 -3.5127 8.6108 45 1 5.5587 -5.3546 11.7377 46 1 5.2473 -1.1656 4.5001 47 1 6.9335 -1.1740 3.9165 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081074600.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:01 Heat of formation + Delta-G solvation = -166.300353 kcal Electronic energy + Delta-G solvation = -25246.460195 eV Core-core repulsion = 21554.628529 eV Total energy + Delta-G solvation = -3691.831666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.21174 -38.21724 -38.13488 -37.05970 -36.54129 -35.91758 -33.14943 -31.50195 -30.40894 -29.22419 -27.98834 -27.60600 -24.14042 -23.90227 -23.15300 -22.06836 -20.77755 -19.96808 -19.17678 -18.37296 -18.11356 -17.10168 -16.99672 -16.72246 -16.55516 -16.11644 -15.57278 -15.34429 -15.28161 -14.73413 -14.62388 -14.50028 -14.32483 -13.76499 -13.75237 -13.59184 -13.28568 -13.20558 -13.11746 -12.95145 -12.92223 -12.82419 -12.79011 -12.50681 -12.32271 -12.27879 -12.19015 -12.13688 -11.79525 -11.74349 -11.62240 -11.46806 -11.40727 -11.18741 -10.66698 -10.41554 -9.92540 -8.28053 -6.42460 -0.76406 1.39089 1.41374 1.52698 1.72133 2.36604 2.65056 2.81823 3.04566 3.06472 3.51819 3.68000 3.97542 3.99082 4.02358 4.05155 4.10854 4.16448 4.36958 4.37552 4.48310 4.56016 4.60145 4.67238 4.70282 4.72620 4.81930 4.85157 4.86525 4.95595 5.01084 5.06369 5.09371 5.11149 5.16829 5.19724 5.23361 5.24610 5.35074 5.44748 5.48455 5.53977 5.65899 6.04256 6.37773 6.70587 7.27624 8.84285 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.002972 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.135304 B = 9419.871445 C =11144.854343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.152 4.152 4 C -0.114 4.114 5 C 0.057 3.943 6 O -0.394 6.394 7 C 0.085 3.915 8 H 0.111 0.889 9 C -0.139 4.139 10 C 0.107 3.893 11 N -1.013 6.013 12 S 2.637 3.363 13 O -0.990 6.990 14 O -0.990 6.990 15 C -0.589 4.589 16 C 0.022 3.978 17 C -0.541 4.541 18 H 0.073 0.927 19 C -0.004 4.004 20 N -0.934 5.934 21 Si 0.976 3.024 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.259 1.259 25 C 0.109 3.891 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.007 0.993 44 H 0.007 0.993 45 H 0.268 0.732 46 H 0.074 0.926 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 11.284 -27.034 30.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 C -0.209 4.209 4 C -0.152 4.152 5 C -0.019 4.019 6 O -0.314 6.314 7 C 0.026 3.974 8 H 0.129 0.871 9 C -0.178 4.178 10 C -0.017 4.017 11 N -0.852 5.852 12 S 2.735 3.265 13 O -0.980 6.980 14 O -0.981 6.981 15 C -0.721 4.721 16 C -0.017 4.017 17 C -0.580 4.580 18 H 0.091 0.909 19 C -0.202 4.202 20 N -0.573 5.573 21 Si 0.799 3.201 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.183 1.183 25 C -0.016 4.016 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.798 10.963 -26.459 29.222 hybrid contribution -0.918 -0.206 1.065 1.421 sum -6.716 10.757 -25.395 28.385 Atomic orbital electron populations 1.21841 0.94847 1.01900 1.02014 1.21029 0.96042 0.96462 0.97340 1.21933 1.01391 0.95591 1.01980 1.21581 0.93774 1.01135 0.98707 1.22784 0.95085 0.96444 0.87626 1.87957 1.21102 1.78795 1.43519 1.23154 0.81854 0.98103 0.94303 0.87124 1.23302 1.03669 0.94317 0.96521 1.22242 1.00379 0.93964 0.85153 1.58466 1.83487 1.14907 1.28365 1.04024 0.76760 0.72602 0.73066 1.93483 1.77798 1.42712 1.84045 1.93485 1.65720 1.57682 1.81191 1.30399 1.20287 1.11218 1.10156 1.18817 0.98000 0.95467 0.89427 1.21502 0.93840 1.45734 0.96954 0.90909 1.26135 1.00111 0.94470 0.99493 1.70100 1.26185 1.45548 1.15459 0.85288 0.78449 0.79088 0.77285 1.19479 1.20579 1.18281 1.22065 1.01776 0.81075 0.96678 0.93062 0.91833 0.92701 0.90304 0.93091 0.92051 0.92026 0.91861 0.92264 0.91987 0.91942 0.88481 0.87687 0.90422 0.90841 0.84628 0.84561 0.97442 0.97429 0.92295 0.90813 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.19 71.98 0.66 -0.86 16 2 C -0.09 -0.91 2.92 -10.79 -0.03 -0.94 16 3 C -0.15 -1.39 8.95 71.98 0.64 -0.75 16 4 C -0.11 -1.53 5.05 30.59 0.15 -1.38 16 5 C 0.06 0.72 5.53 71.98 0.40 1.12 16 6 O -0.39 -7.36 10.07 -148.98 -1.50 -8.86 16 7 C 0.09 1.39 3.47 31.87 0.11 1.50 16 8 H 0.11 1.17 7.83 -2.39 -0.02 1.15 16 9 C -0.14 -2.12 6.81 32.08 0.22 -1.91 16 10 C 0.11 2.44 7.07 86.86 0.61 3.05 16 11 N -1.01 -28.50 3.62 -506.42 -1.83 -30.33 16 12 S 2.64 100.61 5.65 -56.49 -0.32 100.29 16 13 O -0.99 -43.05 17.28 -127.65 -2.21 -45.26 16 14 O -0.99 -42.98 17.60 -127.65 -2.25 -45.23 16 15 C -0.59 -24.00 6.12 71.98 0.44 -23.56 16 16 C 0.02 1.19 4.98 29.85 0.15 1.34 16 17 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 18 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 19 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 20 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 21 Si 0.98 44.21 29.54 68.60 2.03 46.24 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 25 C 0.11 2.49 6.65 86.73 0.58 3.07 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.50 6.57 -2.39 -0.02 0.49 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.66 6.54 -2.39 -0.02 0.64 16 36 H 0.06 0.61 8.14 -2.38 -0.02 0.60 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.85 7.67 -2.39 -0.02 1.83 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 41 H 0.14 5.00 8.14 -2.39 -0.02 4.98 16 42 H 0.14 5.01 8.14 -2.39 -0.02 4.99 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.41 16 44 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 46 H 0.07 1.72 8.07 -2.39 -0.02 1.70 16 47 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -76.65 390.82 -0.25 -76.90 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.91 Total: 13.66 kcal Atomic # 6 Polarization: -54.53 SS G_CDS: 4.63 Total: -49.90 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -1.55 Total: -87.85 kcal Atomic # 8 Polarization: -93.39 SS G_CDS: -5.95 Total: -99.34 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 100.61 SS G_CDS: -0.32 Total: 100.29 kcal Total: -76.65 -0.25 -76.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081074600.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.397 kcal (2) G-P(sol) polarization free energy of solvation -76.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds