Wall clock time and date at job start Tue Mar 31 2020 12:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46735 * 2 1 4 4 C 1.52995 * 109.47416 * 239.99480 * 2 1 3 5 5 C 1.53002 * 109.46928 * 119.99491 * 2 1 3 6 6 N 1.46502 * 109.47163 * 63.78309 * 5 2 1 7 7 C 1.46503 * 119.99945 * 276.77022 * 6 5 2 8 8 C 1.50698 * 109.47427 * 273.88289 * 7 6 5 9 9 H 1.08004 * 119.99688 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00054 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99912 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00256 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46841 * 90.00219 * 12 10 8 14 14 H 1.48495 * 109.47395 * 210.00495 * 12 10 8 15 15 H 1.48509 * 109.46921 * 330.00513 * 12 10 8 16 16 S 1.65593 * 119.99898 * 96.76957 * 6 5 2 17 17 O 1.42103 * 104.27829 * 333.93007 * 16 6 5 18 18 O 1.42104 * 104.27869 * 206.07032 * 16 6 5 19 19 C 1.81404 * 104.44948 * 90.00090 * 16 6 5 20 20 C 1.52996 * 109.47107 * 179.97438 * 19 16 6 21 21 H 1.09000 * 110.45842 * 52.39901 * 20 19 16 22 22 C 1.54511 * 110.51090 * 175.00439 * 20 19 16 23 23 C 1.54476 * 104.06524 * 118.64445 * 22 20 19 24 24 O 1.44428 * 104.80212 * 23.97753 * 23 22 20 25 25 C 1.44416 * 105.27845 * 319.48677 * 24 23 22 26 26 H 1.09000 * 109.47559 * 291.05058 * 1 2 3 27 27 H 1.08998 * 109.46927 * 51.05904 * 1 2 3 28 28 H 1.08999 * 109.46758 * 171.04844 * 1 2 3 29 29 H 1.09003 * 109.47151 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47313 * 299.99453 * 3 2 1 31 31 H 1.08999 * 109.47502 * 59.99574 * 3 2 1 32 32 H 1.08998 * 109.47506 * 300.00055 * 4 2 1 33 33 H 1.08999 * 109.46902 * 60.00382 * 4 2 1 34 34 H 1.09003 * 109.46735 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.47109 * 303.78724 * 5 2 1 36 36 H 1.09001 * 109.47374 * 183.78407 * 5 2 1 37 37 H 1.08999 * 109.47142 * 33.88340 * 7 6 5 38 38 H 1.09008 * 109.46717 * 153.88242 * 7 6 5 39 39 H 0.97004 * 120.00165 * 179.97438 * 11 10 8 40 40 H 1.09006 * 109.46929 * 60.00004 * 19 16 6 41 41 H 1.08993 * 109.47229 * 300.00030 * 19 16 6 42 42 H 1.09004 * 110.50765 * 237.28925 * 22 20 19 43 43 H 1.09000 * 110.50942 * 359.85932 * 22 20 19 44 44 H 1.09005 * 110.37208 * 142.80969 * 23 22 20 45 45 H 1.09001 * 110.37329 * 265.14251 * 23 22 20 46 46 H 1.09001 * 110.37502 * 281.68688 * 25 24 23 47 47 H 1.08997 * 110.37634 * 159.33925 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 7 1.6274 -2.1262 1.2048 7 6 0.2877 -2.5109 1.6558 8 6 0.3052 -2.7384 3.1455 9 1 1.2225 -2.6088 3.7007 10 6 -0.8497 -3.1118 3.7994 11 7 -0.8345 -3.3098 5.0995 12 14 -2.4363 -3.3351 2.8391 13 1 -2.5399 -4.7418 2.3748 14 1 -3.5933 -3.0160 3.7136 15 1 -2.4369 -2.4251 1.6656 16 16 2.6754 -3.2794 0.6445 17 8 3.5395 -2.5709 -0.2335 18 8 1.8311 -4.3160 0.1629 19 6 3.5771 -3.8270 2.1203 20 6 4.5881 -4.9065 1.7289 21 1 5.2158 -4.5608 0.9076 22 6 5.4561 -5.3016 2.9445 23 6 5.1515 -6.8018 3.1516 24 8 4.7038 -7.2691 1.8605 25 6 3.8617 -6.2150 1.3453 26 1 -0.3634 0.3691 0.9591 27 1 -0.3633 0.6459 -0.7993 28 1 -0.3633 -1.0152 -0.1599 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6768 -1.7490 -1.2491 33 1 1.6768 -0.2075 -2.1391 34 1 3.1301 -0.7209 -1.2492 35 1 1.6222 -0.2479 2.1380 36 1 3.1279 -0.6628 1.2840 37 1 -0.4182 -1.7152 1.4181 38 1 -0.0158 -3.4285 1.1517 39 1 -1.6471 -3.5721 5.5597 40 1 2.8731 -4.2348 2.8457 41 1 4.1022 -2.9794 2.5605 42 1 6.5131 -5.1534 2.7233 43 1 5.1666 -4.7260 3.8237 44 1 6.0531 -7.3336 3.4559 45 1 4.3651 -6.9302 3.8954 46 1 2.8774 -6.2532 1.8120 47 1 3.7725 -6.2958 0.2620 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113289978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:50 Heat of formation + Delta-G solvation = -125.656102 kcal Electronic energy + Delta-G solvation = -27544.553624 eV Core-core repulsion = 23854.484425 eV Total energy + Delta-G solvation = -3690.069199 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.40575 -38.11621 -36.62208 -35.44119 -34.17655 -33.69426 -32.30159 -29.80808 -28.37448 -27.01532 -26.80408 -26.50595 -25.04091 -22.87474 -21.90452 -20.52646 -18.96815 -18.07147 -17.25673 -17.01529 -16.62850 -16.03547 -15.83694 -15.28082 -15.21964 -14.49455 -14.43403 -14.09620 -13.82121 -13.69411 -13.11146 -12.90711 -12.72127 -12.42862 -12.42122 -12.23343 -12.11332 -11.86250 -11.65714 -11.56144 -11.44034 -11.40231 -11.29871 -11.18719 -11.10582 -10.95239 -10.74818 -10.72798 -10.47801 -10.23640 -10.14791 -10.06933 -9.97976 -9.75775 -9.62066 -8.69187 -8.03321 -6.22465 -4.23196 0.78574 3.18271 3.24945 3.31183 3.33668 3.91092 4.25630 4.30395 4.38543 4.60237 4.65982 4.85300 5.04201 5.11197 5.12147 5.13078 5.21265 5.23521 5.27492 5.52250 5.55834 5.68719 5.73292 5.80252 5.83012 5.88923 5.90199 5.91081 5.99927 6.10618 6.12793 6.17356 6.18054 6.28564 6.41346 6.49721 6.53418 6.73228 6.75253 6.82974 6.89542 7.09855 7.35656 7.50921 8.33506 8.78106 9.38832 10.89791 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.006596 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.059304 B = 4244.220454 C = 6102.572960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.136 4.136 4 C -0.135 4.135 5 C 0.142 3.858 6 N -0.974 5.974 7 C 0.204 3.796 8 C -0.547 4.547 9 H 0.078 0.922 10 C 0.077 3.923 11 N -0.894 5.894 12 Si 0.867 3.133 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.262 1.262 16 S 2.604 3.396 17 O -0.967 6.967 18 O -0.957 6.957 19 C -0.628 4.628 20 C -0.111 4.111 21 H 0.092 0.908 22 C -0.143 4.143 23 C 0.041 3.959 24 O -0.373 6.373 25 C 0.033 3.967 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.266 0.734 40 H 0.147 0.853 41 H 0.129 0.871 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.624 2.716 -6.119 11.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.194 4.194 4 C -0.193 4.193 5 C 0.015 3.985 6 N -0.811 5.811 7 C 0.080 3.920 8 C -0.586 4.586 9 H 0.096 0.904 10 C -0.126 4.126 11 N -0.531 5.531 12 Si 0.694 3.306 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.186 1.186 16 S 2.697 3.303 17 O -0.957 6.957 18 O -0.947 6.947 19 C -0.756 4.756 20 C -0.131 4.131 21 H 0.110 0.890 22 C -0.182 4.182 23 C -0.036 4.036 24 O -0.292 6.292 25 C -0.044 4.044 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.166 0.834 41 H 0.148 0.852 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.616 2.169 -6.935 12.053 hybrid contribution -0.915 0.161 0.732 1.183 sum 8.701 2.329 -6.203 10.937 Atomic orbital electron populations 1.22039 0.94557 1.02206 1.01255 1.20960 0.96258 0.95151 0.96445 1.21795 1.00794 0.95312 1.01533 1.21989 1.02351 0.99119 0.95806 1.21209 0.98381 0.81283 0.97627 1.57081 1.26400 1.16523 1.81057 1.19843 0.79259 0.97215 0.95661 1.21483 0.98033 1.47934 0.91152 0.90366 1.24838 0.98792 0.94281 0.94703 1.69886 1.28765 1.46546 1.07932 0.86970 0.83457 0.79694 0.80503 1.19666 1.21027 1.18603 1.05064 0.74579 0.74176 0.76443 1.93574 1.69195 1.71664 1.61263 1.93558 1.64681 1.58166 1.78310 1.30841 1.12023 1.08310 1.24399 1.22259 0.96321 0.94908 0.99642 0.89007 1.22990 1.00158 0.96886 0.98149 1.23464 0.99868 0.93589 0.86633 1.89097 1.66681 1.40763 1.32658 1.23849 0.94667 0.84935 1.00927 0.92287 0.93629 0.91691 0.92701 0.92832 0.92619 0.93797 0.93828 0.90579 0.89914 0.91381 0.93088 0.93826 0.92434 0.83435 0.85226 0.90392 0.89570 0.89058 0.91719 0.90213 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.02 37.16 0.26 -1.95 16 2 C -0.09 -1.28 0.85 -154.51 -0.13 -1.41 16 3 C -0.14 -1.64 8.46 37.16 0.31 -1.32 16 4 C -0.13 -2.11 6.82 37.15 0.25 -1.86 16 5 C 0.14 2.27 4.59 -4.04 -0.02 2.26 16 6 N -0.97 -18.16 2.08 -115.65 -0.24 -18.40 16 7 C 0.20 4.47 3.72 -5.19 -0.02 4.45 16 8 C -0.55 -13.81 9.94 -34.44 -0.34 -14.15 16 9 H 0.08 2.07 8.06 -52.48 -0.42 1.64 16 10 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 11 N -0.89 -25.45 13.96 55.43 0.77 -24.68 16 12 Si 0.87 20.32 27.47 -169.99 -4.67 15.65 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 16 S 2.60 46.24 4.37 -107.50 -0.47 45.77 16 17 O -0.97 -17.14 13.31 -57.54 -0.77 -17.91 16 18 O -0.96 -19.76 15.73 -57.54 -0.91 -20.67 16 19 C -0.63 -9.51 5.37 37.16 0.20 -9.31 16 20 C -0.11 -1.54 3.11 -89.05 -0.28 -1.82 16 21 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 22 C -0.14 -1.68 6.74 -25.16 -0.17 -1.85 16 23 C 0.04 0.51 7.63 37.93 0.29 0.80 16 24 O -0.37 -5.67 11.65 -35.23 -0.41 -6.08 16 25 C 0.03 0.51 6.16 37.94 0.23 0.74 16 26 H 0.06 0.92 7.92 -51.93 -0.41 0.50 16 27 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.06 1.12 6.11 -51.93 -0.32 0.80 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.76 6.19 -51.93 -0.32 0.44 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.21 6.75 -51.93 -0.35 0.86 16 35 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 36 H 0.07 0.96 7.54 -51.93 -0.39 0.57 16 37 H 0.05 1.10 4.10 -51.93 -0.21 0.89 16 38 H 0.04 1.01 6.26 -51.92 -0.33 0.69 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.15 2.46 7.96 -51.92 -0.41 2.05 16 41 H 0.13 1.69 8.14 -51.93 -0.42 1.26 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.97 7.73 -51.93 -0.40 0.57 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.30 7.74 -51.93 -0.40 0.90 16 47 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -30.24 367.53 -8.86 -39.10 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -8.21 Total: 5.14 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 0.50 Total: -23.46 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.53 Total: -43.08 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -2.08 Total: -44.66 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Atomic # 16 Polarization: 46.24 SS G_CDS: -0.47 Total: 45.77 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.24 -8.86 -39.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113289978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.553 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds