Wall clock time and date at job start Tue Mar 31 2020 12:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46735 * 2 1 4 4 C 1.52995 * 109.47416 * 239.99480 * 2 1 3 5 5 C 1.53002 * 109.46928 * 119.99491 * 2 1 3 6 6 N 1.46502 * 109.47163 * 63.78309 * 5 2 1 7 7 C 1.46503 * 119.99945 * 276.77022 * 6 5 2 8 8 C 1.50698 * 109.47427 * 273.88289 * 7 6 5 9 9 H 1.08004 * 119.99688 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00054 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99912 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00256 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46841 * 90.00219 * 12 10 8 14 14 H 1.48495 * 109.47395 * 210.00495 * 12 10 8 15 15 H 1.48509 * 109.46921 * 330.00513 * 12 10 8 16 16 S 1.65593 * 119.99898 * 96.76957 * 6 5 2 17 17 O 1.42103 * 104.27829 * 333.93007 * 16 6 5 18 18 O 1.42104 * 104.27869 * 206.07032 * 16 6 5 19 19 C 1.81404 * 104.44948 * 90.00090 * 16 6 5 20 20 C 1.52996 * 109.47107 * 179.97438 * 19 16 6 21 21 H 1.09000 * 110.45842 * 52.39901 * 20 19 16 22 22 C 1.54511 * 110.51090 * 175.00439 * 20 19 16 23 23 C 1.54476 * 104.06524 * 118.64445 * 22 20 19 24 24 O 1.44428 * 104.80212 * 23.97753 * 23 22 20 25 25 C 1.44416 * 105.27845 * 319.48677 * 24 23 22 26 26 H 1.09000 * 109.47559 * 291.05058 * 1 2 3 27 27 H 1.08998 * 109.46927 * 51.05904 * 1 2 3 28 28 H 1.08999 * 109.46758 * 171.04844 * 1 2 3 29 29 H 1.09003 * 109.47151 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47313 * 299.99453 * 3 2 1 31 31 H 1.08999 * 109.47502 * 59.99574 * 3 2 1 32 32 H 1.08998 * 109.47506 * 300.00055 * 4 2 1 33 33 H 1.08999 * 109.46902 * 60.00382 * 4 2 1 34 34 H 1.09003 * 109.46735 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.47109 * 303.78724 * 5 2 1 36 36 H 1.09001 * 109.47374 * 183.78407 * 5 2 1 37 37 H 1.08999 * 109.47142 * 33.88340 * 7 6 5 38 38 H 1.09008 * 109.46717 * 153.88242 * 7 6 5 39 39 H 0.97004 * 120.00165 * 179.97438 * 11 10 8 40 40 H 1.09006 * 109.46929 * 60.00004 * 19 16 6 41 41 H 1.08993 * 109.47229 * 300.00030 * 19 16 6 42 42 H 1.09004 * 110.50765 * 237.28925 * 22 20 19 43 43 H 1.09000 * 110.50942 * 359.85932 * 22 20 19 44 44 H 1.09005 * 110.37208 * 142.80969 * 23 22 20 45 45 H 1.09001 * 110.37329 * 265.14251 * 23 22 20 46 46 H 1.09001 * 110.37502 * 281.68688 * 25 24 23 47 47 H 1.08997 * 110.37634 * 159.33925 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 7 1.6274 -2.1262 1.2048 7 6 0.2877 -2.5109 1.6558 8 6 0.3052 -2.7384 3.1455 9 1 1.2225 -2.6088 3.7007 10 6 -0.8497 -3.1118 3.7994 11 7 -0.8345 -3.3098 5.0995 12 14 -2.4363 -3.3351 2.8391 13 1 -2.5399 -4.7418 2.3748 14 1 -3.5933 -3.0160 3.7136 15 1 -2.4369 -2.4251 1.6656 16 16 2.6754 -3.2794 0.6445 17 8 3.5395 -2.5709 -0.2335 18 8 1.8311 -4.3160 0.1629 19 6 3.5771 -3.8270 2.1203 20 6 4.5881 -4.9065 1.7289 21 1 5.2158 -4.5608 0.9076 22 6 5.4561 -5.3016 2.9445 23 6 5.1515 -6.8018 3.1516 24 8 4.7038 -7.2691 1.8605 25 6 3.8617 -6.2150 1.3453 26 1 -0.3634 0.3691 0.9591 27 1 -0.3633 0.6459 -0.7993 28 1 -0.3633 -1.0152 -0.1599 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6768 -1.7490 -1.2491 33 1 1.6768 -0.2075 -2.1391 34 1 3.1301 -0.7209 -1.2492 35 1 1.6222 -0.2479 2.1380 36 1 3.1279 -0.6628 1.2840 37 1 -0.4182 -1.7152 1.4181 38 1 -0.0158 -3.4285 1.1517 39 1 -1.6471 -3.5721 5.5597 40 1 2.8731 -4.2348 2.8457 41 1 4.1022 -2.9794 2.5605 42 1 6.5131 -5.1534 2.7233 43 1 5.1666 -4.7260 3.8237 44 1 6.0531 -7.3336 3.4559 45 1 4.3651 -6.9302 3.8954 46 1 2.8774 -6.2532 1.8120 47 1 3.7725 -6.2958 0.2620 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113289978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:49 Heat of formation + Delta-G solvation = -145.325258 kcal Electronic energy + Delta-G solvation = -27545.406543 eV Core-core repulsion = 23854.484425 eV Total energy + Delta-G solvation = -3690.922118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.50422 -39.40833 -38.11183 -36.91779 -35.74232 -34.85505 -34.17093 -30.83944 -30.08823 -28.11521 -28.06243 -27.72392 -26.49218 -23.94326 -23.64028 -21.64778 -20.26003 -19.43311 -19.04974 -18.53500 -17.94015 -17.38048 -17.13838 -16.51758 -16.44161 -16.18737 -15.77501 -15.37564 -15.05252 -14.96426 -14.62662 -14.28434 -13.98917 -13.95801 -13.70249 -13.63139 -13.28610 -13.23656 -13.08128 -13.03992 -12.86022 -12.75568 -12.50677 -12.42498 -12.38807 -12.31849 -12.21277 -11.91210 -11.79947 -11.73748 -11.60240 -11.38218 -11.37569 -11.27178 -10.88977 -10.73904 -9.56286 -8.29347 -6.31766 -0.62025 1.34843 1.39335 1.45620 1.78398 2.34143 2.77934 2.92847 3.06798 3.17745 3.37962 3.55729 3.65173 3.86607 3.97206 4.05366 4.07437 4.10099 4.26505 4.29528 4.35289 4.55390 4.65598 4.67357 4.74919 4.77540 4.80267 4.84687 4.92741 4.96528 4.98001 5.01611 5.04953 5.05510 5.12895 5.17119 5.32072 5.38956 5.45806 5.47335 5.58306 5.64062 5.67272 5.87424 6.31543 6.72530 7.32857 8.85399 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.006596 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.059304 B = 4244.220454 C = 6102.572960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.131 4.131 4 C -0.134 4.134 5 C 0.131 3.869 6 N -0.979 5.979 7 C 0.214 3.786 8 C -0.536 4.536 9 H 0.059 0.941 10 C 0.025 3.975 11 N -0.936 5.936 12 Si 0.914 3.086 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.242 1.242 16 S 2.604 3.396 17 O -0.966 6.966 18 O -0.992 6.992 19 C -0.612 4.612 20 C -0.115 4.115 21 H 0.110 0.890 22 C -0.138 4.138 23 C 0.032 3.968 24 O -0.388 6.388 25 C 0.026 3.974 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.018 0.982 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.030 0.970 39 H 0.266 0.734 40 H 0.130 0.870 41 H 0.156 0.844 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.120 0.880 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.032 4.099 -6.902 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.189 4.189 4 C -0.192 4.192 5 C 0.006 3.994 6 N -0.815 5.815 7 C 0.089 3.911 8 C -0.575 4.575 9 H 0.077 0.923 10 C -0.174 4.174 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.201 1.201 14 H -0.206 1.206 15 H -0.166 1.166 16 S 2.700 3.300 17 O -0.956 6.956 18 O -0.983 6.983 19 C -0.743 4.743 20 C -0.135 4.135 21 H 0.128 0.872 22 C -0.177 4.177 23 C -0.044 4.044 24 O -0.307 6.307 25 C -0.051 4.051 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.148 0.852 41 H 0.174 0.826 42 H 0.123 0.877 43 H 0.110 0.890 44 H 0.138 0.862 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.020 3.586 -7.760 13.947 hybrid contribution -1.238 -0.295 0.990 1.612 sum 9.782 3.291 -6.771 12.344 Atomic orbital electron populations 1.22026 0.95152 1.01150 1.01790 1.20989 0.95819 0.96785 0.95277 1.21757 1.01453 0.93121 1.02573 1.21975 1.02139 0.97994 0.97045 1.21488 0.99740 0.79915 0.98289 1.57016 1.25444 1.18057 1.80984 1.19537 0.81416 0.96919 0.93250 1.21745 0.97028 1.46053 0.92702 0.92254 1.25543 1.01885 0.94600 0.95372 1.69998 1.29560 1.48639 1.09439 0.86206 0.80222 0.79715 0.80047 1.20063 1.20641 1.16551 1.04960 0.74435 0.73509 0.77059 1.93568 1.68721 1.71481 1.61838 1.93512 1.65991 1.59162 1.79604 1.30662 1.11893 1.09732 1.21978 1.22382 0.96227 0.93486 1.01413 0.87230 1.23035 1.01239 0.96220 0.97197 1.23721 1.00850 0.94544 0.85313 1.89078 1.66542 1.41107 1.34011 1.23845 0.94185 0.86201 1.00912 0.92717 0.91571 0.94033 0.91671 0.91511 0.91919 0.96270 0.92118 0.90781 0.90338 0.89276 0.92309 0.95198 0.92498 0.85189 0.82559 0.87655 0.89018 0.86189 0.92374 0.92307 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 7.02 71.98 0.51 -3.71 16 2 C -0.09 -2.41 0.85 -52.18 -0.04 -2.45 16 3 C -0.13 -2.74 8.46 71.98 0.61 -2.13 16 4 C -0.13 -3.96 6.82 71.98 0.49 -3.47 16 5 C 0.13 4.03 4.59 86.38 0.40 4.42 16 6 N -0.98 -36.16 2.08 -519.82 -1.08 -37.24 16 7 C 0.21 9.42 3.72 85.63 0.32 9.74 16 8 C -0.54 -27.43 9.94 25.60 0.25 -27.17 16 9 H 0.06 3.20 8.06 -2.91 -0.02 3.17 16 10 C 0.03 1.37 5.47 84.65 0.46 1.83 16 11 N -0.94 -54.42 13.96 21.45 0.30 -54.12 16 12 Si 0.91 41.93 27.47 68.60 1.88 43.82 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 16 S 2.60 91.66 4.37 -56.49 -0.25 91.41 16 17 O -0.97 -33.03 13.31 -127.65 -1.70 -34.73 16 18 O -0.99 -41.91 15.73 -127.65 -2.01 -43.92 16 19 C -0.61 -17.99 5.37 71.98 0.39 -17.61 16 20 C -0.11 -3.01 3.11 -9.77 -0.03 -3.04 16 21 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 22 C -0.14 -2.90 6.74 31.61 0.21 -2.69 16 23 C 0.03 0.73 7.63 72.48 0.55 1.29 16 24 O -0.39 -11.54 11.65 -148.98 -1.74 -13.28 16 25 C 0.03 0.79 6.16 72.49 0.45 1.23 16 26 H 0.05 1.62 7.92 -2.39 -0.02 1.60 16 27 H 0.07 1.62 8.12 -2.39 -0.02 1.61 16 28 H 0.04 1.39 6.11 -2.39 -0.01 1.38 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.02 0.64 6.19 -2.39 -0.01 0.62 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 2.20 6.75 -2.39 -0.02 2.18 16 35 H 0.08 2.47 8.12 -2.38 -0.02 2.45 16 36 H 0.09 2.33 7.54 -2.39 -0.02 2.31 16 37 H 0.06 2.51 4.10 -2.39 -0.01 2.50 16 38 H 0.03 1.42 6.26 -2.38 -0.01 1.40 16 39 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.13 4.40 7.96 -2.39 -0.02 4.38 16 41 H 0.16 3.72 8.14 -2.39 -0.02 3.70 16 42 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.09 1.84 7.73 -2.39 -0.02 1.82 16 44 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.06 2.01 7.74 -2.39 -0.02 1.99 16 47 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -65.62 367.53 0.85 -64.77 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.87 Total: 27.05 kcal Atomic # 6 Polarization: -48.31 SS G_CDS: 4.56 Total: -43.75 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -0.78 Total: -91.36 kcal Atomic # 8 Polarization: -86.49 SS G_CDS: -5.44 Total: -91.93 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.82 kcal Atomic # 16 Polarization: 91.66 SS G_CDS: -0.25 Total: 91.41 kcal Total: -65.62 0.85 -64.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113289978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.557 kcal (2) G-P(sol) polarization free energy of solvation -65.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds