Wall clock time and date at job start Tue Mar 31 2020 12:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 N 1.46500 * 109.47120 * 180.02562 * 5 4 2 7 7 C 1.46509 * 119.99936 * 275.00105 * 6 5 4 8 8 C 1.50700 * 109.46975 * 85.00115 * 7 6 5 9 9 H 1.08002 * 120.00062 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00175 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99575 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00253 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47356 * 90.00115 * 12 10 8 14 14 H 1.48502 * 109.47027 * 209.99764 * 12 10 8 15 15 H 1.48501 * 109.47396 * 329.99899 * 12 10 8 16 16 S 1.65597 * 120.00082 * 95.00313 * 6 5 4 17 17 O 1.42109 * 104.27723 * 206.07095 * 16 6 5 18 18 O 1.42097 * 104.27607 * 333.92813 * 16 6 5 19 19 C 1.81399 * 104.44961 * 90.00228 * 16 6 5 20 20 C 1.53007 * 109.46962 * 180.02562 * 19 16 6 21 21 H 1.08998 * 110.79737 * 308.62265 * 20 19 16 22 22 C 1.54815 * 110.90356 * 184.99646 * 20 19 16 23 23 C 1.54103 * 104.18379 * 220.91795 * 22 20 19 24 24 O 1.43741 * 107.29603 * 357.97363 * 23 22 20 25 25 C 1.44385 * 106.97691 * 26.50860 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 34 34 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 35 35 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 36 36 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 37 37 H 1.08997 * 109.47277 * 205.00029 * 7 6 5 38 38 H 1.08994 * 109.47087 * 325.00226 * 7 6 5 39 39 H 0.96998 * 119.99697 * 180.02562 * 11 10 8 40 40 H 1.08997 * 109.46793 * 299.99597 * 19 16 6 41 41 H 1.08995 * 109.47450 * 59.99597 * 19 16 6 42 42 H 1.08997 * 110.48739 * 339.59850 * 22 20 19 43 43 H 1.09000 * 110.48296 * 102.10994 * 22 20 19 44 44 H 1.08997 * 109.87401 * 117.39447 * 23 22 20 45 45 H 1.09001 * 109.87815 * 238.54593 * 23 22 20 46 46 H 1.09000 * 110.62103 * 201.43438 * 25 24 23 47 47 H 1.09004 * 110.61550 * 78.44320 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.8310 -1.1880 6 7 4.0532 -1.5211 -2.3844 7 6 4.0897 -2.9853 -2.4220 8 6 2.7421 -3.5106 -2.8453 9 1 1.9390 -2.8227 -3.0648 10 6 2.5344 -4.8694 -2.9523 11 7 3.5126 -5.7071 -2.6855 12 14 0.8639 -5.5206 -3.4762 13 1 0.8243 -5.6493 -4.9551 14 1 0.6349 -6.8510 -2.8574 15 1 -0.1957 -4.5794 -3.0327 16 16 4.5640 -0.6463 -3.6944 17 8 4.3660 -1.5196 -4.7978 18 8 3.8544 0.5807 -3.5946 19 6 6.3346 -0.3834 -3.4005 20 6 6.9290 0.4242 -4.5562 21 1 6.6729 -0.0263 -5.5151 22 6 8.4634 0.5615 -4.4025 23 6 8.7547 2.0192 -4.8087 24 8 7.5047 2.6119 -5.1993 25 6 6.4631 1.9012 -4.4960 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6054 -1.7198 -1.2952 34 1 1.7517 -0.1583 -2.1369 35 1 3.9995 0.1674 -1.1421 36 1 3.8532 -1.3940 -0.3003 37 1 4.8470 -3.3117 -3.1346 38 1 4.3340 -3.3682 -1.4312 39 1 3.3667 -6.6631 -2.7611 40 1 6.4708 0.1637 -2.4677 41 1 6.8389 -1.3473 -3.3332 42 1 8.7603 0.3869 -3.3683 43 1 8.9770 -0.1322 -5.0681 44 1 9.1742 2.5630 -3.9623 45 1 9.4518 2.0382 -5.6464 46 1 5.5058 2.0228 -5.0028 47 1 6.3972 2.2411 -3.4624 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116340068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:53 Heat of formation + Delta-G solvation = -159.779165 kcal Electronic energy + Delta-G solvation = -26674.148447 eV Core-core repulsion = 22982.599560 eV Total energy + Delta-G solvation = -3691.548886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.47041 -38.55379 -38.03611 -36.84853 -36.23262 -34.86997 -34.41126 -30.89467 -30.38213 -28.53090 -27.91904 -27.67871 -24.75315 -23.68535 -23.56986 -21.79766 -20.79327 -19.73286 -18.63571 -18.47545 -17.89137 -17.25427 -17.08304 -16.51119 -16.42346 -16.16025 -15.88971 -15.36866 -15.04003 -14.88239 -14.58131 -14.38572 -14.08067 -13.77154 -13.59206 -13.51509 -13.34143 -13.27360 -13.05485 -13.03279 -12.89537 -12.88445 -12.63487 -12.47592 -12.38691 -12.25073 -12.20886 -11.96457 -11.73885 -11.70197 -11.53651 -11.42301 -11.33995 -11.12819 -10.71378 -10.54640 -9.66474 -8.16824 -6.24446 -0.65103 1.37094 1.40097 1.48402 1.83213 2.42232 2.78976 3.03178 3.13923 3.18566 3.35544 3.57829 3.68402 3.91328 4.04544 4.06107 4.12712 4.16530 4.23854 4.25976 4.34230 4.54349 4.62454 4.67452 4.71502 4.76210 4.77085 4.84001 4.87657 4.95576 4.98385 5.08114 5.10151 5.10914 5.20969 5.24584 5.31045 5.43440 5.50302 5.64036 5.67625 5.77073 5.80332 5.99997 6.18231 6.82606 7.42458 8.90809 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011445 B = 0.004902 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.934343 B = 5710.412976 C = 7494.029668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.135 4.135 5 C 0.130 3.870 6 N -0.992 5.992 7 C 0.269 3.731 8 C -0.530 4.530 9 H 0.050 0.950 10 C 0.013 3.987 11 N -0.925 5.925 12 Si 0.944 3.056 13 H -0.282 1.282 14 H -0.275 1.275 15 H -0.268 1.268 16 S 2.590 3.410 17 O -0.996 6.996 18 O -0.979 6.979 19 C -0.601 4.601 20 C -0.124 4.124 21 H 0.087 0.913 22 C -0.138 4.138 23 C 0.037 3.963 24 O -0.397 6.397 25 C 0.033 3.967 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.018 0.982 38 H 0.032 0.968 39 H 0.265 0.735 40 H 0.167 0.833 41 H 0.151 0.849 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.692 14.694 5.231 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.175 4.175 5 C 0.005 3.995 6 N -0.829 5.829 7 C 0.146 3.854 8 C -0.569 4.569 9 H 0.069 0.931 10 C -0.186 4.186 11 N -0.566 5.566 12 Si 0.770 3.230 13 H -0.208 1.208 14 H -0.200 1.200 15 H -0.193 1.193 16 S 2.687 3.313 17 O -0.986 6.986 18 O -0.969 6.969 19 C -0.733 4.733 20 C -0.144 4.144 21 H 0.105 0.895 22 C -0.177 4.177 23 C -0.039 4.039 24 O -0.316 6.316 25 C -0.044 4.044 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.036 0.964 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.185 0.815 41 H 0.169 0.831 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.107 0.893 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.140 14.941 4.396 17.573 hybrid contribution -0.572 -1.283 -0.207 1.420 sum 7.568 13.658 4.190 16.166 Atomic orbital electron populations 1.21827 0.95353 1.01252 1.01895 1.21078 0.95903 0.96844 0.97267 1.21875 1.01552 0.95001 1.01778 1.22102 0.96879 1.00345 0.98143 1.21381 0.94126 0.96627 0.87397 1.57348 1.77715 1.16211 1.31662 1.18647 0.95710 0.74154 0.96915 1.21810 0.98561 0.91766 1.44809 0.93147 1.25610 1.00095 0.97267 0.95589 1.69985 1.33185 1.02971 1.50480 0.85769 0.80857 0.78069 0.78333 1.20841 1.19974 1.19300 1.05362 0.79156 0.73074 0.73682 1.93568 1.85916 1.66076 1.53062 1.93509 1.70829 1.46200 1.86381 1.30503 1.23052 1.11194 1.08526 1.22556 0.99197 0.95676 0.96984 0.89507 1.23033 0.92047 0.97685 1.04939 1.23450 0.86466 0.92298 1.01702 1.88860 1.16382 1.58279 1.68079 1.23978 0.92158 0.89145 0.99075 0.93577 0.90913 0.93798 0.90198 0.93673 0.91244 0.91775 0.92946 0.93912 0.88732 0.89770 0.96372 0.95021 0.92611 0.81523 0.83060 0.87893 0.88751 0.90311 0.88289 0.89330 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.19 71.98 0.66 -3.04 16 2 C -0.09 -2.41 2.92 -10.80 -0.03 -2.45 16 3 C -0.14 -3.21 8.95 71.98 0.64 -2.57 16 4 C -0.14 -4.72 4.60 30.59 0.14 -4.58 16 5 C 0.13 4.15 5.04 86.38 0.44 4.58 16 6 N -0.99 -38.58 2.73 -519.84 -1.42 -40.00 16 7 C 0.27 13.12 5.04 85.63 0.43 13.55 16 8 C -0.53 -29.62 8.41 25.60 0.22 -29.40 16 9 H 0.05 2.88 6.89 -2.91 -0.02 2.86 16 10 C 0.01 0.75 5.46 84.65 0.46 1.21 16 11 N -0.93 -53.85 13.29 21.45 0.28 -53.57 16 12 Si 0.94 45.19 29.54 68.60 2.03 47.21 16 13 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 15 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 16 S 2.59 94.41 5.18 -56.49 -0.29 94.12 16 17 O -1.00 -47.41 16.99 -127.65 -2.17 -49.58 16 18 O -0.98 -36.61 15.78 -127.65 -2.01 -38.62 16 19 C -0.60 -13.99 5.55 71.98 0.40 -13.59 16 20 C -0.12 -2.81 3.09 -9.49 -0.03 -2.84 16 21 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 22 C -0.14 -2.21 6.60 31.59 0.21 -2.00 16 23 C 0.04 0.61 7.70 72.36 0.56 1.16 16 24 O -0.40 -9.61 11.52 -148.98 -1.72 -11.33 16 25 C 0.03 0.79 6.41 72.66 0.47 1.25 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.28 6.57 -2.39 -0.02 1.27 16 33 H 0.05 2.16 6.59 -2.39 -0.02 2.15 16 34 H 0.04 1.65 7.90 -2.39 -0.02 1.63 16 35 H 0.09 2.40 6.03 -2.39 -0.01 2.38 16 36 H 0.08 2.45 8.00 -2.39 -0.02 2.43 16 37 H 0.02 0.95 7.61 -2.39 -0.02 0.93 16 38 H 0.03 1.55 8.00 -2.39 -0.02 1.53 16 39 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 40 H 0.17 2.66 7.98 -2.39 -0.02 2.64 16 41 H 0.15 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.10 1.24 7.86 -2.39 -0.02 1.22 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.09 2.34 7.77 -2.39 -0.02 2.32 16 47 H 0.09 1.77 7.93 -2.39 -0.02 1.75 16 Total: -1.00 -73.22 382.30 0.18 -73.04 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.92 Total: 17.43 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 4.56 Total: -38.71 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -1.13 Total: -93.56 kcal Atomic # 8 Polarization: -93.63 SS G_CDS: -5.90 Total: -99.52 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 94.41 SS G_CDS: -0.29 Total: 94.12 kcal Total: -73.22 0.18 -73.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116340068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.744 kcal (2) G-P(sol) polarization free energy of solvation -73.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds