Wall clock time and date at job start Tue Mar 31 2020 12:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47391 * 2 1 4 4 C 1.53000 * 109.47034 * 239.99574 * 2 1 3 5 5 C 1.50707 * 109.47035 * 119.99901 * 2 1 3 6 6 O 1.20764 * 119.99835 * 359.97438 * 5 2 1 7 7 C 1.50694 * 120.00135 * 179.97438 * 5 2 1 8 8 N 1.46500 * 109.47193 * 179.97438 * 7 5 2 9 9 C 1.34774 * 120.00119 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00304 * 0.02562 * 9 8 7 11 11 C 1.50704 * 120.00135 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.47208 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97915 * 12 11 9 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99715 * 12 11 9 27 27 H 1.08990 * 109.47401 * 300.00388 * 1 2 3 28 28 H 1.09001 * 109.46757 * 60.00269 * 1 2 3 29 29 H 1.09002 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47628 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46950 * 299.99613 * 3 2 1 32 32 H 1.09002 * 109.47554 * 59.99264 * 3 2 1 33 33 H 1.08994 * 109.47513 * 300.00257 * 4 2 1 34 34 H 1.09001 * 109.47220 * 60.00441 * 4 2 1 35 35 H 1.09008 * 109.47023 * 180.02562 * 4 2 1 36 36 H 1.09008 * 109.46632 * 60.00093 * 7 5 2 37 37 H 1.08998 * 109.47582 * 300.00329 * 7 5 2 38 38 H 0.97001 * 119.99420 * 0.02562 * 8 7 5 39 39 H 1.09002 * 109.46571 * 59.99894 * 11 9 8 40 40 H 1.08992 * 109.46782 * 300.00158 * 11 9 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 44 44 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2475 -1.1689 2.0257 7 6 3.5139 -0.8486 1.4688 8 7 3.7416 -1.5716 2.7225 9 6 4.9993 -1.8136 3.1420 10 8 5.9427 -1.4325 2.4819 11 6 5.2335 -2.5578 4.4313 12 6 6.7151 -2.6948 4.6703 13 6 7.3949 -3.7957 4.1810 14 6 8.7543 -3.9253 4.3987 15 6 9.4387 -2.9519 5.1000 16 6 8.7582 -1.8485 5.5973 17 8 9.4271 -0.8931 6.2922 18 6 10.7246 -1.1331 6.5689 19 1 11.2077 -2.0135 6.1714 20 6 11.4388 -0.2495 7.3638 21 7 10.8503 0.8226 7.8483 22 14 13.2364 -0.5824 7.7478 23 1 14.0895 0.0501 6.7098 24 1 13.5719 -0.0141 9.0781 25 1 13.4767 -2.0478 7.7606 26 6 7.3925 -1.7215 5.3776 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2490 36 1 3.9653 0.1415 1.5335 37 1 3.9647 -1.4002 0.6438 38 1 2.9871 -1.8760 3.2506 39 1 4.7824 -3.5479 4.3664 40 1 4.7823 -2.0063 5.2561 41 1 6.8628 -4.5556 3.6280 42 1 9.2822 -4.7861 4.0158 43 1 10.5014 -3.0511 5.2652 44 1 11.3498 1.4405 8.4046 45 1 6.8611 -0.8626 5.7599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122240316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:09 Heat of formation + Delta-G solvation = -88.709384 kcal Electronic energy + Delta-G solvation = -25702.832007 eV Core-core repulsion = 21878.920987 eV Total energy + Delta-G solvation = -3823.911021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.75521 -39.55883 -38.66069 -36.45285 -36.25473 -34.51385 -32.37238 -31.98149 -29.45962 -28.92454 -27.84263 -27.50045 -26.49986 -25.16835 -23.10201 -21.61933 -21.12819 -20.31420 -18.91210 -17.67513 -17.25899 -16.92496 -16.55040 -16.07924 -15.86041 -15.26205 -14.93660 -14.71439 -14.49779 -14.32245 -14.16834 -13.98541 -13.56923 -13.39381 -13.26900 -12.81100 -12.79404 -12.69339 -12.57054 -12.47703 -12.34656 -12.16469 -11.76897 -11.47637 -11.44834 -11.37075 -11.22861 -10.78568 -10.73942 -10.56607 -10.40676 -10.02086 -9.75476 -9.28104 -9.24099 -8.78456 -8.00787 -7.15757 -6.38878 -3.97769 1.44671 2.13618 2.45123 2.74836 2.97812 3.16959 3.17190 3.22049 3.57577 4.01450 4.17506 4.33862 4.40740 4.59356 4.90197 4.92856 5.02245 5.07984 5.10321 5.12811 5.16355 5.22456 5.26565 5.33865 5.36502 5.38286 5.45399 5.55702 5.64237 5.72155 5.74089 5.78404 5.81294 5.99295 6.23502 6.23656 6.39963 6.71794 6.96588 6.97901 7.13138 7.32786 7.40963 7.43634 7.50127 7.88994 8.06372 8.27610 9.06957 9.78406 10.79506 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022611 B = 0.002203 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.022022 B =12705.235975 C =13276.151751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C -0.143 4.143 4 C -0.142 4.142 5 C 0.362 3.638 6 O -0.446 6.446 7 C 0.068 3.932 8 N -0.735 5.735 9 C 0.516 3.484 10 O -0.518 6.518 11 C -0.093 4.093 12 C -0.033 4.033 13 C -0.196 4.196 14 C -0.075 4.075 15 C -0.230 4.230 16 C 0.154 3.846 17 O -0.180 6.180 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.174 4.174 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.407 0.593 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.014 -3.524 -15.200 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.200 4.200 4 C -0.199 4.199 5 C 0.237 3.763 6 O -0.318 6.318 7 C -0.057 4.057 8 N -0.392 5.392 9 C 0.303 3.697 10 O -0.392 6.392 11 C -0.133 4.133 12 C -0.034 4.034 13 C -0.215 4.215 14 C -0.093 4.093 15 C -0.250 4.250 16 C 0.101 3.899 17 O -0.084 6.084 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.193 4.193 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.244 0.756 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.735 -3.067 -15.005 24.198 hybrid contribution 0.633 -0.260 0.298 0.746 sum -18.102 -3.327 -14.707 23.559 Atomic orbital electron populations 1.21727 0.92255 1.02764 1.02376 1.21150 0.98005 0.97328 0.94783 1.21895 1.01961 0.93034 1.03145 1.21889 1.01901 1.00397 0.95763 1.24793 0.90562 0.75190 0.85767 1.90379 1.58695 1.38377 1.44328 1.21661 0.94883 0.99929 0.89239 1.45864 1.08989 1.60021 1.24353 1.20807 0.81871 0.79552 0.87467 1.90762 1.41543 1.50343 1.56554 1.20576 0.96022 1.01449 0.95208 1.18651 0.92289 0.94808 0.97631 1.20351 0.94704 0.99484 1.06971 1.20675 0.93941 0.97537 0.97179 1.21172 1.00809 0.96907 1.06081 1.19275 0.91335 0.88291 0.90985 1.83977 1.24446 1.37273 1.62680 1.21315 0.83399 1.10224 1.31710 0.89134 1.25273 1.00221 0.95235 0.95859 1.70040 1.36852 1.11236 1.31893 0.85722 0.80718 0.78860 0.78169 1.19930 1.20314 1.19230 1.19949 0.92090 1.00700 1.06600 0.91976 0.91763 0.92035 0.91320 0.91034 0.91964 0.92058 0.91040 0.91367 0.87845 0.87950 0.75637 0.88244 0.88093 0.87938 0.87482 0.85626 0.92125 0.86823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 7.76 37.16 0.29 -0.55 16 2 C -0.11 -0.69 0.87 -155.66 -0.14 -0.83 16 3 C -0.14 -0.77 8.26 37.15 0.31 -0.46 16 4 C -0.14 -0.71 8.26 37.16 0.31 -0.40 16 5 C 0.36 3.09 6.04 -29.03 -0.18 2.91 16 6 O -0.45 -4.85 15.29 6.00 0.09 -4.76 16 7 C 0.07 0.64 5.43 -5.20 -0.03 0.61 16 8 N -0.74 -8.27 5.53 -61.47 -0.34 -8.61 16 9 C 0.52 7.60 7.82 -10.98 -0.09 7.52 16 10 O -0.52 -9.93 16.03 5.56 0.09 -9.84 16 11 C -0.09 -1.28 5.83 -29.03 -0.17 -1.45 16 12 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 13 C -0.20 -3.60 9.70 -39.53 -0.38 -3.99 16 14 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 15 C -0.23 -5.27 9.17 -39.40 -0.36 -5.63 16 16 C 0.15 3.92 6.65 -39.11 -0.26 3.66 16 17 O -0.18 -5.32 9.76 0.05 0.00 -5.32 16 18 C -0.39 -11.22 9.49 30.89 0.29 -10.92 16 19 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.91 13.67 55.48 0.76 -25.15 16 22 Si 0.94 20.99 29.55 -169.99 -5.02 15.96 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 26 C -0.17 -3.88 9.65 -39.39 -0.38 -4.26 16 27 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 30 H 0.07 0.36 7.28 -51.93 -0.38 -0.02 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.32 7.28 -51.92 -0.38 -0.05 16 36 H 0.10 0.98 7.38 -51.92 -0.38 0.60 16 37 H 0.10 0.91 7.38 -51.93 -0.38 0.53 16 38 H 0.41 3.97 7.44 -40.82 -0.30 3.66 16 39 H 0.10 1.07 8.09 -51.93 -0.42 0.65 16 40 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 41 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.11 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 379.14 15.07 5.71 5.71 Total: -1.00 -35.39 379.14 -7.04 -42.43 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.59 Total: 5.33 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -1.74 Total: -15.76 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.42 Total: -33.76 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: 0.18 Total: -19.92 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.39 -7.04 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122240316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.283 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds