Wall clock time and date at job start Tue Mar 31 2020 12:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47391 * 2 1 4 4 C 1.53000 * 109.47034 * 239.99574 * 2 1 3 5 5 C 1.50707 * 109.47035 * 119.99901 * 2 1 3 6 6 O 1.20764 * 119.99835 * 359.97438 * 5 2 1 7 7 C 1.50694 * 120.00135 * 179.97438 * 5 2 1 8 8 N 1.46500 * 109.47193 * 179.97438 * 7 5 2 9 9 C 1.34774 * 120.00119 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00304 * 0.02562 * 9 8 7 11 11 C 1.50704 * 120.00135 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.47208 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97915 * 12 11 9 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99715 * 12 11 9 27 27 H 1.08990 * 109.47401 * 300.00388 * 1 2 3 28 28 H 1.09001 * 109.46757 * 60.00269 * 1 2 3 29 29 H 1.09002 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47628 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46950 * 299.99613 * 3 2 1 32 32 H 1.09002 * 109.47554 * 59.99264 * 3 2 1 33 33 H 1.08994 * 109.47513 * 300.00257 * 4 2 1 34 34 H 1.09001 * 109.47220 * 60.00441 * 4 2 1 35 35 H 1.09008 * 109.47023 * 180.02562 * 4 2 1 36 36 H 1.09008 * 109.46632 * 60.00093 * 7 5 2 37 37 H 1.08998 * 109.47582 * 300.00329 * 7 5 2 38 38 H 0.97001 * 119.99420 * 0.02562 * 8 7 5 39 39 H 1.09002 * 109.46571 * 59.99894 * 11 9 8 40 40 H 1.08992 * 109.46782 * 300.00158 * 11 9 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 44 44 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2475 -1.1689 2.0257 7 6 3.5139 -0.8486 1.4688 8 7 3.7416 -1.5716 2.7225 9 6 4.9993 -1.8136 3.1420 10 8 5.9427 -1.4325 2.4819 11 6 5.2335 -2.5578 4.4313 12 6 6.7151 -2.6948 4.6703 13 6 7.3949 -3.7957 4.1810 14 6 8.7543 -3.9253 4.3987 15 6 9.4387 -2.9519 5.1000 16 6 8.7582 -1.8485 5.5973 17 8 9.4271 -0.8931 6.2922 18 6 10.7246 -1.1331 6.5689 19 1 11.2077 -2.0135 6.1714 20 6 11.4388 -0.2495 7.3638 21 7 10.8503 0.8226 7.8483 22 14 13.2364 -0.5824 7.7478 23 1 14.0895 0.0501 6.7098 24 1 13.5719 -0.0141 9.0781 25 1 13.4767 -2.0478 7.7606 26 6 7.3925 -1.7215 5.3776 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2490 36 1 3.9653 0.1415 1.5335 37 1 3.9647 -1.4002 0.6438 38 1 2.9871 -1.8760 3.2506 39 1 4.7824 -3.5479 4.3664 40 1 4.7823 -2.0063 5.2561 41 1 6.8628 -4.5556 3.6280 42 1 9.2822 -4.7861 4.0158 43 1 10.5014 -3.0511 5.2652 44 1 11.3498 1.4405 8.4046 45 1 6.8611 -0.8626 5.7599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122240316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:08 Heat of formation + Delta-G solvation = -112.353376 kcal Electronic energy + Delta-G solvation = -25703.857288 eV Core-core repulsion = 21878.920987 eV Total energy + Delta-G solvation = -3824.936301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58172 -40.91698 -40.18751 -38.19526 -36.82682 -35.56574 -34.34038 -33.50597 -30.96824 -30.12708 -28.32848 -28.24370 -27.59948 -27.11086 -23.89472 -23.24360 -22.63024 -21.54729 -19.79022 -19.38059 -18.78268 -18.15377 -17.50745 -17.02557 -16.71851 -16.67325 -16.41086 -16.10151 -15.78647 -15.66266 -15.39176 -15.02455 -14.70216 -14.67247 -14.37682 -14.30701 -13.98988 -13.66011 -13.50545 -13.29841 -13.08296 -13.01983 -12.96830 -12.78342 -12.60414 -12.46801 -12.39297 -12.21957 -12.10124 -11.91721 -11.83616 -11.20204 -11.10040 -10.79992 -10.62215 -10.24902 -9.63859 -8.97461 -8.46538 -6.15057 0.51702 0.75621 0.76254 1.34322 1.44159 1.52419 1.60436 2.02190 2.18215 2.81198 2.88673 3.18288 3.44175 3.64385 3.78878 3.86600 3.90511 4.07711 4.11388 4.27588 4.32875 4.35460 4.42957 4.43949 4.58955 4.63341 4.70011 4.72410 4.74430 4.83547 4.93954 4.94406 5.01109 5.06895 5.13479 5.19524 5.25906 5.31237 5.33316 5.37770 5.65506 5.73286 5.75772 6.03356 6.23163 6.27587 6.44368 6.97980 7.19012 7.79763 8.77090 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.022611 B = 0.002203 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.022022 B =12705.235975 C =13276.151751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C -0.144 4.144 4 C -0.142 4.142 5 C 0.370 3.630 6 O -0.471 6.471 7 C 0.061 3.939 8 N -0.721 5.721 9 C 0.519 3.481 10 O -0.570 6.570 11 C -0.092 4.092 12 C -0.026 4.026 13 C -0.180 4.180 14 C -0.073 4.073 15 C -0.246 4.246 16 C 0.112 3.888 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.101 0.899 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.264 1.264 24 H -0.270 1.270 25 H -0.252 1.252 26 C -0.193 4.193 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.417 0.583 39 H 0.143 0.857 40 H 0.120 0.880 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.118 0.882 44 H 0.272 0.728 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.175 -5.756 -17.167 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.109 4.109 3 C -0.201 4.201 4 C -0.199 4.199 5 C 0.246 3.754 6 O -0.345 6.345 7 C -0.063 4.063 8 N -0.377 5.377 9 C 0.307 3.693 10 O -0.448 6.448 11 C -0.132 4.132 12 C -0.027 4.027 13 C -0.198 4.198 14 C -0.091 4.091 15 C -0.265 4.265 16 C 0.062 3.938 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.839 3.161 23 H -0.189 1.189 24 H -0.194 1.194 25 H -0.176 1.176 26 C -0.212 4.212 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.255 0.745 39 H 0.161 0.839 40 H 0.138 0.862 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.975 -5.339 -17.004 26.770 hybrid contribution 0.699 0.283 0.724 1.045 sum -19.276 -5.056 -16.280 25.733 Atomic orbital electron populations 1.21730 0.92148 1.02393 1.02741 1.21168 0.98016 0.97618 0.94062 1.21924 1.02044 0.92449 1.03657 1.21914 1.02091 1.00333 0.95529 1.25009 0.89700 0.74509 0.86139 1.90377 1.59034 1.39720 1.45374 1.21858 0.95899 0.99899 0.88682 1.45732 1.08211 1.58940 1.24779 1.20867 0.82152 0.79064 0.87265 1.90756 1.43171 1.52743 1.58158 1.20691 0.92785 1.04215 0.95459 1.19152 0.94951 0.93375 0.95172 1.20976 0.94423 0.99614 1.04794 1.21135 0.94774 0.97519 0.95664 1.21300 1.00774 0.97348 1.07077 1.19871 0.92706 0.89169 0.92088 1.83937 1.25111 1.39762 1.65333 1.21830 0.83844 1.10972 1.32327 0.88193 1.26625 1.05624 0.94698 0.95287 1.70190 1.39279 1.12887 1.33740 0.84569 0.73726 0.79532 0.78239 1.18872 1.19439 1.17577 1.20214 0.91345 1.01836 1.07805 0.93111 0.89911 0.92766 0.91232 0.89394 0.92651 0.92196 0.89489 0.91100 0.87865 0.86977 0.74511 0.83917 0.86241 0.83470 0.83604 0.86397 0.91866 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 7.76 71.98 0.56 -0.88 16 2 C -0.11 -1.14 0.87 -52.93 -0.05 -1.19 16 3 C -0.14 -1.30 8.26 71.98 0.59 -0.70 16 4 C -0.14 -1.08 8.26 71.98 0.59 -0.49 16 5 C 0.37 5.76 6.04 29.10 0.18 5.94 16 6 O -0.47 -9.65 15.29 -1.46 -0.02 -9.68 16 7 C 0.06 1.06 5.43 85.63 0.46 1.53 16 8 N -0.72 -14.70 5.53 -466.79 -2.58 -17.28 16 9 C 0.52 14.20 7.82 87.66 0.69 14.88 16 10 O -0.57 -21.27 16.03 -3.04 -0.05 -21.32 16 11 C -0.09 -2.25 5.83 29.10 0.17 -2.08 16 12 C -0.03 -0.92 4.37 -19.88 -0.09 -1.01 16 13 C -0.18 -5.95 9.70 22.30 0.22 -5.73 16 14 C -0.07 -2.67 10.04 22.25 0.22 -2.45 16 15 C -0.25 -11.40 9.17 22.39 0.21 -11.20 16 16 C 0.11 5.93 6.65 22.58 0.15 6.08 16 17 O -0.23 -14.82 9.76 -22.74 -0.22 -15.05 16 18 C -0.41 -25.07 9.49 67.92 0.64 -24.43 16 19 H 0.10 5.58 5.21 -2.91 -0.02 5.56 16 20 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 21 N -0.92 -58.28 13.67 21.61 0.30 -57.99 16 22 Si 1.02 44.16 29.55 68.60 2.03 46.18 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 26 C -0.19 -8.81 9.65 22.39 0.22 -8.60 16 27 H 0.05 0.66 8.10 -2.39 -0.02 0.64 16 28 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.67 8.10 -2.39 -0.02 0.65 16 30 H 0.07 0.62 7.28 -2.39 -0.02 0.61 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.07 0.51 7.28 -2.38 -0.02 0.50 16 36 H 0.10 1.86 7.38 -2.38 -0.02 1.85 16 37 H 0.11 1.79 7.38 -2.39 -0.02 1.77 16 38 H 0.42 7.08 7.44 -92.71 -0.69 6.39 16 39 H 0.14 2.30 8.09 -2.39 -0.02 2.28 16 40 H 0.12 2.53 8.08 -2.39 -0.02 2.51 16 41 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 42 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 43 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16 44 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 45 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -83.20 379.14 5.00 -78.21 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.31 Total: 28.26 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: 5.23 Total: -31.34 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -2.28 Total: -75.26 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -0.29 Total: -46.05 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -83.20 5.00 -78.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122240316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.145 kcal (2) G-P(sol) polarization free energy of solvation -83.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds