Wall clock time and date at job start Tue Mar 31 2020 12:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47435 * 2 1 4 4 C 1.52998 * 109.46951 * 300.00050 * 3 2 1 5 5 C 1.52999 * 109.46890 * 59.99860 * 3 2 1 6 6 O 1.42907 * 109.46765 * 65.00163 * 5 3 2 7 7 N 1.46497 * 109.47090 * 180.02562 * 3 2 1 8 8 C 1.34778 * 119.99635 * 180.02562 * 7 3 2 9 9 O 1.21722 * 120.00190 * 359.97438 * 8 7 3 10 10 C 1.46257 * 119.99548 * 180.02562 * 8 7 3 11 11 C 1.35024 * 119.99524 * 179.97438 * 10 8 7 12 12 C 1.46967 * 119.99593 * 179.97438 * 11 10 8 13 13 C 1.40023 * 120.10306 * 359.72727 * 12 11 10 14 14 C 1.37598 * 119.89529 * 179.69455 * 13 12 11 15 15 C 1.39173 * 120.10155 * 0.60489 * 14 13 12 16 16 O 1.35576 * 119.89749 * 179.69738 * 15 14 13 17 17 C 1.34775 * 116.99785 * 174.41697 * 16 15 14 18 18 H 1.08001 * 120.00202 * 5.06213 * 17 16 15 19 19 C 1.38726 * 119.99636 * 185.05340 * 17 16 15 20 20 N 1.31506 * 120.00224 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99807 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47304 * 59.99565 * 21 19 17 23 23 H 1.48495 * 109.46949 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46966 * 299.99889 * 21 19 17 25 25 C 1.39172 * 120.20241 * 359.66856 * 15 14 13 26 26 C 1.37591 * 120.10713 * 0.02904 * 25 15 14 27 27 H 1.09007 * 109.47146 * 300.00168 * 1 2 3 28 28 H 1.08999 * 109.47174 * 59.99524 * 1 2 3 29 29 H 1.08996 * 109.47692 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47174 * 120.00476 * 2 1 3 31 31 H 1.09004 * 109.46653 * 239.99835 * 2 1 3 32 32 H 1.09003 * 109.47026 * 60.00175 * 4 3 2 33 33 H 1.09006 * 109.46955 * 179.97438 * 4 3 2 34 34 H 1.08995 * 109.47175 * 300.00077 * 4 3 2 35 35 H 1.08999 * 109.47271 * 184.99574 * 5 3 2 36 36 H 1.08996 * 109.47659 * 305.00468 * 5 3 2 37 37 H 0.96706 * 113.99223 * 179.97438 * 6 5 3 38 38 H 0.97000 * 120.00086 * 0.02562 * 7 3 2 39 39 H 1.07997 * 120.00254 * 359.97438 * 10 8 7 40 40 H 1.08002 * 120.00360 * 0.02562 * 11 10 8 41 41 H 1.07997 * 120.05041 * 359.97438 * 13 12 11 42 42 H 1.08006 * 119.94702 * 180.27497 * 14 13 12 43 43 H 0.97000 * 119.99749 * 180.02562 * 20 19 17 44 44 H 1.08008 * 119.94762 * 180.02562 * 25 15 14 45 45 H 1.07997 * 120.05970 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 1.5300 2.1637 1.2492 6 8 2.0999 1.5612 2.4131 7 7 3.5050 1.4424 -0.0006 8 6 4.1789 2.6096 -0.0002 9 8 3.5703 3.6638 0.0002 10 6 5.6415 2.6095 -0.0014 11 6 6.3166 3.7788 -0.0015 12 6 7.7863 3.7787 -0.0021 13 6 8.4885 2.5673 0.0032 14 6 9.8644 2.5722 -0.0038 15 6 10.5582 3.7787 -0.0034 16 8 11.9139 3.7787 -0.0040 17 6 12.5258 4.9739 -0.1204 18 1 11.9408 5.8818 -0.1254 19 6 13.9069 5.0379 -0.2336 20 7 14.6191 3.9325 -0.2279 21 14 14.7550 6.6946 -0.3942 22 1 14.4542 7.5227 0.8012 23 1 16.2222 6.4914 -0.4998 24 1 14.2626 7.3867 -1.6124 25 6 9.8645 4.9852 -0.0029 26 6 8.4886 4.9902 -0.0022 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8932 -0.5139 -0.8900 32 1 0.4400 2.1638 -1.2492 33 1 1.8931 3.1915 -1.2490 34 1 1.8933 1.6499 -2.1392 35 1 1.8185 3.2139 1.2057 36 1 0.4438 2.0868 1.2952 37 1 1.8201 1.9690 3.2441 38 1 3.9900 0.6023 -0.0013 39 1 6.1814 1.6742 -0.0022 40 1 5.7766 4.7142 -0.0003 41 1 7.9509 1.6307 0.0081 42 1 10.4069 1.6383 -0.0042 43 1 15.5849 3.9774 -0.3067 44 1 10.4070 5.9191 -0.0029 45 1 7.9510 5.9269 -0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125449640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:21 Heat of formation + Delta-G solvation = -79.735529 kcal Electronic energy + Delta-G solvation = -25597.167377 eV Core-core repulsion = 21773.645492 eV Total energy + Delta-G solvation = -3823.521885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.24779 -39.16365 -37.71783 -36.79884 -35.55581 -33.20728 -32.82160 -32.23773 -30.41164 -29.70818 -28.03710 -26.35580 -25.68642 -24.88230 -23.10981 -22.13262 -20.77886 -19.53720 -19.18050 -18.14191 -17.50886 -17.16235 -17.04649 -16.28666 -15.28415 -15.10988 -14.86142 -14.77729 -14.40866 -14.37594 -13.92513 -13.79196 -13.48755 -13.34164 -13.03092 -12.95989 -12.58889 -12.51688 -12.30524 -12.14379 -11.98441 -11.88401 -11.73579 -11.67848 -11.12480 -11.09308 -11.05161 -10.81671 -10.67949 -10.53043 -10.20812 -9.55653 -9.48273 -9.41551 -9.03320 -8.82165 -8.36235 -7.08774 -6.63435 -4.18480 1.11948 2.15360 2.60017 3.04847 3.06712 3.08871 3.21600 3.64121 3.83569 4.02492 4.44410 4.52973 4.61330 4.90711 4.94053 4.99092 5.03300 5.06982 5.14221 5.29649 5.30303 5.36992 5.48366 5.55630 5.56782 5.62834 5.67921 5.69553 5.71242 5.82732 5.92990 6.03308 6.13940 6.16809 6.46447 6.51473 6.57426 6.65393 6.81581 6.93802 7.15113 7.25841 7.30567 7.44376 7.65961 7.67441 7.81774 8.43976 8.81220 9.48523 10.53167 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.037968 B = 0.001933 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.276805 B =14481.335579 C =14730.241956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.182 3.818 4 C -0.166 4.166 5 C 0.061 3.939 6 O -0.567 6.567 7 N -0.717 5.717 8 C 0.562 3.438 9 O -0.561 6.561 10 C -0.279 4.279 11 C 0.035 3.965 12 C -0.197 4.197 13 C -0.043 4.043 14 C -0.200 4.200 15 C 0.166 3.834 16 O -0.163 6.163 17 C -0.394 4.394 18 H 0.096 0.904 19 C 0.042 3.958 20 N -0.853 5.853 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.268 1.268 25 C -0.242 4.242 26 C -0.036 4.036 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.376 0.624 38 H 0.399 0.601 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.274 0.726 44 H 0.131 0.869 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.540 -5.300 0.747 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C 0.095 3.905 4 C -0.224 4.224 5 C -0.018 4.018 6 O -0.371 6.371 7 N -0.367 5.367 8 C 0.355 3.645 9 O -0.443 6.443 10 C -0.300 4.300 11 C 0.015 3.985 12 C -0.198 4.198 13 C -0.062 4.062 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.064 6.064 17 C -0.469 4.469 18 H 0.114 0.886 19 C -0.165 4.165 20 N -0.485 5.485 21 Si 0.769 3.231 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.193 1.193 25 C -0.261 4.261 26 C -0.054 4.054 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.222 0.778 38 H 0.234 0.766 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.084 0.916 44 H 0.149 0.851 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -23.224 -5.208 0.290 23.802 hybrid contribution 0.421 0.709 0.361 0.900 sum -22.803 -4.499 0.651 23.252 Atomic orbital electron populations 1.21856 0.94872 1.02018 1.02182 1.21713 0.96732 0.94889 1.02896 1.20282 0.80504 0.95731 0.93942 1.22244 1.01035 1.02994 0.96157 1.22713 0.95923 0.97904 0.85221 1.86450 1.73368 1.61246 1.16066 1.45803 1.05842 1.08821 1.76256 1.18313 0.88276 0.83129 0.74831 1.90683 1.70434 1.31466 1.51681 1.22467 0.92126 0.99429 1.16010 1.22256 0.92438 0.97702 0.86081 1.18476 0.91506 0.93590 1.16242 1.20884 0.92931 0.96661 0.95684 1.20152 0.93401 0.96243 1.12079 1.19609 0.84633 0.93412 0.91341 1.83904 1.13254 1.33432 1.75799 1.21420 0.90260 0.83080 1.52147 0.88618 1.25391 0.95395 0.99643 0.96037 1.70004 1.07243 1.27351 1.43944 0.85719 0.78287 0.79720 0.79424 1.19268 1.20096 1.19264 1.21095 0.94175 0.98468 1.12396 1.20983 0.93560 0.96382 0.94518 0.92308 0.92200 0.92361 0.90570 0.91411 0.91690 0.89973 0.92024 0.91384 0.93293 0.77816 0.76647 0.86057 0.86013 0.86429 0.86150 0.91570 0.85149 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.22 37.16 0.34 -0.60 16 2 C -0.12 -0.95 5.00 -26.73 -0.13 -1.08 16 3 C 0.18 1.77 0.61 -131.82 -0.08 1.69 16 4 C -0.17 -1.60 8.05 37.16 0.30 -1.30 16 5 C 0.06 0.61 5.42 37.16 0.20 0.81 16 6 O -0.57 -5.80 12.96 -35.23 -0.46 -6.26 16 7 N -0.72 -7.95 4.87 -49.03 -0.24 -8.19 16 8 C 0.56 7.93 7.16 -13.04 -0.09 7.84 16 9 O -0.56 -9.25 12.49 5.17 0.06 -9.19 16 10 C -0.28 -3.94 9.41 -37.50 -0.35 -4.29 16 11 C 0.04 0.54 9.45 -37.19 -0.35 0.19 16 12 C -0.20 -3.42 5.87 -105.02 -0.62 -4.03 16 13 C -0.04 -0.75 9.40 -39.15 -0.37 -1.12 16 14 C -0.20 -4.05 9.97 -39.47 -0.39 -4.44 16 15 C 0.17 3.86 6.66 -38.89 -0.26 3.60 16 16 O -0.16 -4.45 9.74 0.74 0.01 -4.45 16 17 C -0.39 -10.52 9.48 30.91 0.29 -10.23 16 18 H 0.10 2.35 5.18 -52.49 -0.27 2.07 16 19 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 20 N -0.85 -23.98 13.67 55.48 0.76 -23.22 16 21 Si 0.94 19.62 29.55 -169.99 -5.02 14.59 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 25 C -0.24 -5.06 9.14 -39.47 -0.36 -5.42 16 26 C -0.04 -0.65 9.78 -39.15 -0.38 -1.03 16 27 H 0.06 0.37 6.32 -51.92 -0.33 0.04 16 28 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.64 7.82 -51.93 -0.41 0.23 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 33 H 0.08 1.01 6.16 -51.93 -0.32 0.69 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.85 6.31 -51.93 -0.33 0.52 16 36 H 0.05 0.39 6.17 -51.93 -0.32 0.07 16 37 H 0.38 2.43 9.12 45.56 0.42 2.84 16 38 H 0.40 3.68 8.45 -40.82 -0.34 3.34 16 39 H 0.12 1.51 6.07 -52.49 -0.32 1.19 16 40 H 0.12 1.86 7.52 -52.49 -0.39 1.47 16 41 H 0.12 1.69 6.16 -52.49 -0.32 1.36 16 42 H 0.12 2.33 8.06 -52.48 -0.42 1.90 16 43 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 44 H 0.13 2.69 5.62 -52.48 -0.29 2.39 16 45 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -31.51 367.34 -6.86 -38.37 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.15 Total: 11.21 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -2.35 Total: -18.41 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.52 Total: -31.41 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.38 Total: -19.90 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.51 -6.86 -38.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125449640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.364 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds