Wall clock time and date at job start Tue Mar 31 2020 12:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47435 * 2 1 4 4 C 1.52998 * 109.46951 * 300.00050 * 3 2 1 5 5 C 1.52999 * 109.46890 * 59.99860 * 3 2 1 6 6 O 1.42907 * 109.46765 * 65.00163 * 5 3 2 7 7 N 1.46497 * 109.47090 * 180.02562 * 3 2 1 8 8 C 1.34778 * 119.99635 * 180.02562 * 7 3 2 9 9 O 1.21722 * 120.00190 * 359.97438 * 8 7 3 10 10 C 1.46257 * 119.99548 * 180.02562 * 8 7 3 11 11 C 1.35024 * 119.99524 * 179.97438 * 10 8 7 12 12 C 1.46967 * 119.99593 * 179.97438 * 11 10 8 13 13 C 1.40023 * 120.10306 * 359.72727 * 12 11 10 14 14 C 1.37598 * 119.89529 * 179.69455 * 13 12 11 15 15 C 1.39173 * 120.10155 * 0.60489 * 14 13 12 16 16 O 1.35576 * 119.89749 * 179.69738 * 15 14 13 17 17 C 1.34775 * 116.99785 * 174.41697 * 16 15 14 18 18 H 1.08001 * 120.00202 * 5.06213 * 17 16 15 19 19 C 1.38726 * 119.99636 * 185.05340 * 17 16 15 20 20 N 1.31506 * 120.00224 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99807 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47304 * 59.99565 * 21 19 17 23 23 H 1.48495 * 109.46949 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46966 * 299.99889 * 21 19 17 25 25 C 1.39172 * 120.20241 * 359.66856 * 15 14 13 26 26 C 1.37591 * 120.10713 * 0.02904 * 25 15 14 27 27 H 1.09007 * 109.47146 * 300.00168 * 1 2 3 28 28 H 1.08999 * 109.47174 * 59.99524 * 1 2 3 29 29 H 1.08996 * 109.47692 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47174 * 120.00476 * 2 1 3 31 31 H 1.09004 * 109.46653 * 239.99835 * 2 1 3 32 32 H 1.09003 * 109.47026 * 60.00175 * 4 3 2 33 33 H 1.09006 * 109.46955 * 179.97438 * 4 3 2 34 34 H 1.08995 * 109.47175 * 300.00077 * 4 3 2 35 35 H 1.08999 * 109.47271 * 184.99574 * 5 3 2 36 36 H 1.08996 * 109.47659 * 305.00468 * 5 3 2 37 37 H 0.96706 * 113.99223 * 179.97438 * 6 5 3 38 38 H 0.97000 * 120.00086 * 0.02562 * 7 3 2 39 39 H 1.07997 * 120.00254 * 359.97438 * 10 8 7 40 40 H 1.08002 * 120.00360 * 0.02562 * 11 10 8 41 41 H 1.07997 * 120.05041 * 359.97438 * 13 12 11 42 42 H 1.08006 * 119.94702 * 180.27497 * 14 13 12 43 43 H 0.97000 * 119.99749 * 180.02562 * 20 19 17 44 44 H 1.08008 * 119.94762 * 180.02562 * 25 15 14 45 45 H 1.07997 * 120.05970 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 1.5300 2.1637 1.2492 6 8 2.0999 1.5612 2.4131 7 7 3.5050 1.4424 -0.0006 8 6 4.1789 2.6096 -0.0002 9 8 3.5703 3.6638 0.0002 10 6 5.6415 2.6095 -0.0014 11 6 6.3166 3.7788 -0.0015 12 6 7.7863 3.7787 -0.0021 13 6 8.4885 2.5673 0.0032 14 6 9.8644 2.5722 -0.0038 15 6 10.5582 3.7787 -0.0034 16 8 11.9139 3.7787 -0.0040 17 6 12.5258 4.9739 -0.1204 18 1 11.9408 5.8818 -0.1254 19 6 13.9069 5.0379 -0.2336 20 7 14.6191 3.9325 -0.2279 21 14 14.7550 6.6946 -0.3942 22 1 14.4542 7.5227 0.8012 23 1 16.2222 6.4914 -0.4998 24 1 14.2626 7.3867 -1.6124 25 6 9.8645 4.9852 -0.0029 26 6 8.4886 4.9902 -0.0022 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8932 -0.5139 -0.8900 32 1 0.4400 2.1638 -1.2492 33 1 1.8931 3.1915 -1.2490 34 1 1.8933 1.6499 -2.1392 35 1 1.8185 3.2139 1.2057 36 1 0.4438 2.0868 1.2952 37 1 1.8201 1.9690 3.2441 38 1 3.9900 0.6023 -0.0013 39 1 6.1814 1.6742 -0.0022 40 1 5.7766 4.7142 -0.0003 41 1 7.9509 1.6307 0.0081 42 1 10.4069 1.6383 -0.0042 43 1 15.5849 3.9774 -0.3067 44 1 10.4070 5.9191 -0.0029 45 1 7.9510 5.9269 -0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125449640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:20 Heat of formation + Delta-G solvation = -102.053353 kcal Electronic energy + Delta-G solvation = -25598.135150 eV Core-core repulsion = 21773.645492 eV Total energy + Delta-G solvation = -3824.489659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24376 -40.80260 -38.80778 -38.26866 -36.34680 -34.72198 -34.06092 -33.61641 -31.96919 -30.53400 -29.40265 -27.51739 -27.10928 -25.73575 -24.35044 -23.66401 -22.09111 -20.60015 -20.33168 -19.68822 -18.82580 -18.32899 -18.19595 -17.24544 -16.49117 -16.44219 -16.04689 -15.93542 -15.75386 -15.61110 -15.56963 -15.05196 -14.81162 -14.58745 -14.11151 -14.02214 -13.74267 -13.59122 -13.32044 -13.22339 -13.16287 -12.94358 -12.80894 -12.72442 -12.67070 -12.53097 -12.21826 -12.13842 -11.71176 -11.52241 -11.21660 -11.12106 -11.01113 -10.55408 -10.44420 -9.96994 -9.89554 -8.67264 -8.51858 -6.18144 -0.22170 0.58137 1.16284 1.35639 1.47575 1.51543 2.15584 2.28791 2.43299 2.86917 3.18007 3.32327 3.42374 3.71114 3.89779 3.93590 3.95233 4.08523 4.28223 4.31001 4.35813 4.38531 4.47633 4.51801 4.64344 4.69505 4.70666 4.73927 4.83653 4.94562 5.01629 5.03698 5.11884 5.19168 5.19699 5.30006 5.33825 5.34826 5.49040 5.58434 5.63372 5.68814 5.82497 5.97271 6.10491 6.70718 6.84039 6.92212 7.37722 7.69415 8.69955 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.037968 B = 0.001933 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.276805 B =14481.335579 C =14730.241956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.173 3.827 4 C -0.162 4.162 5 C 0.063 3.937 6 O -0.581 6.581 7 N -0.704 5.704 8 C 0.554 3.446 9 O -0.585 6.585 10 C -0.246 4.246 11 C 0.013 3.987 12 C -0.169 4.169 13 C -0.039 4.039 14 C -0.207 4.207 15 C 0.129 3.871 16 O -0.220 6.220 17 C -0.418 4.418 18 H 0.106 0.894 19 C -0.019 4.019 20 N -0.914 5.914 21 Si 1.019 2.981 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.248 4.248 26 C -0.041 4.041 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.391 0.609 38 H 0.411 0.589 39 H 0.146 0.854 40 H 0.125 0.875 41 H 0.157 0.843 42 H 0.122 0.878 43 H 0.275 0.725 44 H 0.125 0.875 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.360 -5.891 0.635 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.088 3.912 4 C -0.220 4.220 5 C -0.015 4.015 6 O -0.388 6.388 7 N -0.354 5.354 8 C 0.345 3.655 9 O -0.468 6.468 10 C -0.266 4.266 11 C -0.007 4.007 12 C -0.170 4.170 13 C -0.057 4.057 14 C -0.226 4.226 15 C 0.077 3.923 16 O -0.125 6.125 17 C -0.493 4.493 18 H 0.123 0.877 19 C -0.218 4.218 20 N -0.550 5.550 21 Si 0.838 3.162 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.181 1.181 25 C -0.268 4.268 26 C -0.059 4.059 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.239 0.761 38 H 0.247 0.753 39 H 0.163 0.837 40 H 0.143 0.857 41 H 0.175 0.825 42 H 0.140 0.860 43 H 0.084 0.916 44 H 0.143 0.857 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -27.134 -5.826 0.192 27.752 hybrid contribution 0.934 0.698 0.431 1.243 sum -26.199 -5.127 0.623 26.704 Atomic orbital electron populations 1.21863 0.93684 1.02854 1.02448 1.21668 0.97680 0.93035 1.03106 1.20523 0.79482 0.97307 0.93932 1.22195 1.02384 1.01160 0.96265 1.22661 0.97207 0.96239 0.85412 1.86401 1.73831 1.61591 1.16933 1.45792 1.06778 1.08416 1.74442 1.18393 0.88344 0.83617 0.75122 1.90701 1.70866 1.32604 1.52619 1.22820 0.92493 0.99910 1.11404 1.22138 0.91065 0.98668 0.88810 1.18800 0.92669 0.93254 1.12302 1.21269 0.91723 0.98465 0.94230 1.20416 0.94741 0.95526 1.11943 1.20175 0.84035 0.95378 0.92713 1.83885 1.15109 1.33835 1.79643 1.21861 0.91017 0.83611 1.52856 0.87721 1.26623 0.95834 1.03783 0.95531 1.70143 1.07421 1.29952 1.47527 0.84645 0.76980 0.74676 0.79944 1.18098 1.19580 1.18142 1.21202 0.95457 0.97611 1.12486 1.21314 0.92431 0.98319 0.93829 0.92392 0.91568 0.91323 0.91142 0.90391 0.89648 0.92810 0.91537 0.94175 0.91119 0.76071 0.75341 0.83694 0.85692 0.82514 0.85975 0.91591 0.85683 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.22 71.98 0.66 -0.67 16 2 C -0.12 -1.37 5.00 30.59 0.15 -1.22 16 3 C 0.17 2.87 0.61 3.60 0.00 2.87 16 4 C -0.16 -2.69 8.05 71.98 0.58 -2.11 16 5 C 0.06 1.12 5.42 71.98 0.39 1.51 16 6 O -0.58 -10.39 12.96 -148.98 -1.93 -12.32 16 7 N -0.70 -13.31 4.87 -427.25 -2.08 -15.38 16 8 C 0.55 13.95 7.16 86.33 0.62 14.57 16 9 O -0.58 -18.13 12.49 -4.42 -0.06 -18.18 16 10 C -0.25 -5.93 9.41 23.62 0.22 -5.71 16 11 C 0.01 0.36 9.45 23.82 0.23 0.59 16 12 C -0.17 -5.41 5.87 -20.12 -0.12 -5.53 16 13 C -0.04 -1.26 9.40 22.55 0.21 -1.05 16 14 C -0.21 -8.43 9.97 22.34 0.22 -8.20 16 15 C 0.13 6.23 6.66 22.72 0.15 6.38 16 16 O -0.22 -12.83 9.74 -20.27 -0.20 -13.03 16 17 C -0.42 -23.66 9.48 67.94 0.64 -23.02 16 18 H 0.11 5.41 5.18 -2.91 -0.02 5.39 16 19 C -0.02 -1.05 5.49 84.86 0.47 -0.58 16 20 N -0.91 -54.67 13.67 21.62 0.30 -54.37 16 21 Si 1.02 41.68 29.55 68.60 2.03 43.71 16 22 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 25 C -0.25 -10.55 9.14 22.34 0.20 -10.34 16 26 C -0.04 -1.41 9.78 22.55 0.22 -1.19 16 27 H 0.06 0.53 6.32 -2.38 -0.02 0.51 16 28 H 0.07 0.51 6.43 -2.39 -0.02 0.50 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.94 7.82 -2.39 -0.02 0.92 16 31 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.08 1.04 6.43 -2.39 -0.02 1.03 16 33 H 0.05 1.23 6.16 -2.38 -0.01 1.22 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.04 0.95 6.31 -2.39 -0.02 0.93 16 36 H 0.07 0.93 6.17 -2.39 -0.01 0.92 16 37 H 0.39 4.16 9.12 -74.05 -0.68 3.49 16 38 H 0.41 5.93 8.45 -92.71 -0.78 5.15 16 39 H 0.15 2.81 6.07 -2.91 -0.02 2.79 16 40 H 0.13 3.46 7.52 -2.91 -0.02 3.44 16 41 H 0.16 3.77 6.16 -2.91 -0.02 3.75 16 42 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 43 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 44 H 0.13 5.34 5.62 -2.91 -0.02 5.33 16 45 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -73.44 367.34 2.50 -70.94 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.41 Total: 32.37 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: 4.86 Total: -33.71 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -1.78 Total: -69.76 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -2.18 Total: -43.54 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -73.44 2.50 -70.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125449640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.118 kcal (2) G-P(sol) polarization free energy of solvation -73.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds