Wall clock time and date at job start Tue Mar 31 2020 12:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47068 * 2 1 4 4 C 1.53005 * 109.46941 * 119.99937 * 2 1 3 5 5 C 1.52996 * 109.47125 * 64.99842 * 4 2 1 6 6 N 1.46509 * 109.46940 * 179.97438 * 5 4 2 7 7 C 1.46493 * 119.99641 * 274.99931 * 6 5 4 8 8 C 1.50704 * 109.47619 * 274.99826 * 7 6 5 9 9 H 1.08002 * 119.99383 * 0.02562 * 8 7 6 10 10 C 1.37868 * 120.00049 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00006 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00352 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.47323 * 89.99962 * 12 10 8 14 14 H 1.48507 * 109.47457 * 210.00077 * 12 10 8 15 15 H 1.48506 * 109.47072 * 330.00211 * 12 10 8 16 16 S 1.65599 * 119.99663 * 95.00182 * 6 5 4 17 17 O 1.42101 * 104.27337 * 153.92527 * 16 6 5 18 18 O 1.42094 * 104.27813 * 26.07422 * 16 6 5 19 19 C 1.81395 * 104.44891 * 269.99823 * 16 6 5 20 20 C 1.52999 * 109.47158 * 180.02562 * 19 16 6 21 21 H 1.09002 * 109.98994 * 306.08477 * 20 19 16 22 22 C 1.54100 * 109.87953 * 185.00295 * 20 19 16 23 23 C 1.54817 * 104.18606 * 238.54620 * 22 20 19 24 24 C 1.54998 * 102.12466 * 339.09929 * 23 22 20 25 25 O 1.43746 * 109.87960 * 67.16707 * 20 19 16 26 26 H 1.08992 * 109.46829 * 60.00295 * 1 2 3 27 27 H 1.09004 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47411 * 300.00216 * 1 2 3 29 29 H 1.08993 * 109.46902 * 239.99762 * 2 1 3 30 30 H 1.08995 * 109.46981 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46766 * 299.99993 * 3 2 1 32 32 H 1.08996 * 109.47181 * 59.99643 * 3 2 1 33 33 H 1.09005 * 109.46788 * 304.99804 * 4 2 1 34 34 H 1.09000 * 109.46807 * 185.00481 * 4 2 1 35 35 H 1.09005 * 109.47318 * 60.00287 * 5 4 2 36 36 H 1.09000 * 109.47484 * 299.99586 * 5 4 2 37 37 H 1.09002 * 109.47453 * 35.00410 * 7 6 5 38 38 H 1.09007 * 109.46562 * 155.00392 * 7 6 5 39 39 H 0.97001 * 120.00236 * 179.97438 * 11 10 8 40 40 H 1.09000 * 109.47212 * 60.00255 * 19 16 6 41 41 H 1.09002 * 109.47401 * 300.00237 * 19 16 6 42 42 H 1.08991 * 110.48958 * 119.87334 * 22 20 19 43 43 H 1.08998 * 110.49031 * 357.21976 * 22 20 19 44 44 H 1.09002 * 110.90844 * 97.31763 * 23 22 20 45 45 H 1.08997 * 110.90682 * 220.88854 * 23 22 20 46 46 H 1.08997 * 110.61738 * 155.54187 * 24 23 22 47 47 H 1.08997 * 110.62197 * 278.54323 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 2.1241 -2.8862 2.3840 7 6 3.4922 -3.4085 2.4203 8 6 3.5239 -4.7783 1.7927 9 1 2.6157 -5.2157 1.4051 10 6 4.7122 -5.4729 1.7132 11 7 4.7399 -6.6680 1.1650 12 14 6.2829 -4.7165 2.3842 13 1 6.4443 -5.0949 3.8111 14 1 7.4447 -5.2155 1.6053 15 1 6.2084 -3.2378 2.2696 16 16 1.1300 -3.0764 3.6947 17 8 1.6297 -4.2351 4.3482 18 8 -0.1808 -3.0524 3.1468 19 6 1.4250 -1.5988 4.7048 20 6 0.5537 -1.6576 5.9611 21 1 -0.4900 -1.8057 5.6841 22 6 0.7025 -0.3504 6.7635 23 6 1.2131 -0.8124 8.1501 24 6 0.7872 -2.3026 8.1739 25 8 0.9914 -2.7321 6.8096 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 2.0699 -2.6550 0.3003 36 1 0.5489 -2.2724 1.1422 37 1 4.1513 -2.7398 1.8666 38 1 3.8283 -3.4752 3.4551 39 1 5.5760 -7.1566 1.1088 40 1 1.1728 -0.7086 4.1286 41 1 2.4755 -1.5595 4.9931 42 1 -0.2609 0.1502 6.8592 43 1 1.4302 0.3079 6.2890 44 1 2.2968 -0.7164 8.2174 45 1 0.7247 -0.2556 8.9498 46 1 1.4198 -2.8717 8.8550 47 1 -0.2621 -2.3975 8.4532 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172065145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:29 Heat of formation + Delta-G solvation = -157.177754 kcal Electronic energy + Delta-G solvation = -26785.441100 eV Core-core repulsion = 23094.005020 eV Total energy + Delta-G solvation = -3691.436081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.49249 -38.61434 -38.07398 -36.87827 -36.28897 -34.45234 -33.54697 -32.65079 -30.86408 -28.58412 -27.91292 -27.35531 -24.67361 -23.53204 -23.06363 -22.04859 -20.77876 -19.75101 -19.05930 -18.58006 -17.89031 -17.47243 -17.07603 -16.61670 -16.31368 -16.14324 -15.98120 -15.56108 -14.86193 -14.67321 -14.54649 -14.44782 -14.00276 -13.94105 -13.79697 -13.70141 -13.19221 -13.09571 -13.01770 -13.01468 -12.91874 -12.77491 -12.69256 -12.65779 -12.31317 -12.18083 -12.09270 -11.89431 -11.75150 -11.64829 -11.57268 -11.43528 -11.37626 -11.22693 -10.85256 -10.76516 -9.65923 -8.27113 -6.32015 -0.67923 1.34963 1.40936 1.48331 1.80865 2.36394 2.70363 2.98751 3.06689 3.25496 3.41660 3.63954 3.83700 3.85106 3.94446 4.05192 4.09962 4.12795 4.21038 4.32123 4.45316 4.49521 4.53940 4.68103 4.77853 4.78101 4.81713 4.84337 4.90648 4.93879 4.94050 5.03469 5.08173 5.11792 5.19162 5.20740 5.24060 5.39191 5.44614 5.51663 5.57657 5.60089 5.79935 5.82930 6.33915 6.70277 7.29942 8.91233 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.008508 B = 0.006127 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.262429 B = 4569.033056 C = 6637.416215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.096 4.096 3 C -0.141 4.141 4 C -0.131 4.131 5 C 0.111 3.889 6 N -0.989 5.989 7 C 0.235 3.765 8 C -0.537 4.537 9 H 0.020 0.980 10 C 0.003 3.997 11 N -0.953 5.953 12 Si 0.944 3.056 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.223 1.223 16 S 2.588 3.412 17 O -0.986 6.986 18 O -0.997 6.997 19 C -0.607 4.607 20 C 0.069 3.931 21 H 0.082 0.918 22 C -0.136 4.136 23 C -0.150 4.150 24 C 0.028 3.972 25 O -0.409 6.409 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.266 0.734 40 H 0.181 0.819 41 H 0.154 0.846 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.508 24.048 9.780 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.116 4.116 3 C -0.198 4.198 4 C -0.170 4.170 5 C -0.014 4.014 6 N -0.825 5.825 7 C 0.110 3.890 8 C -0.576 4.576 9 H 0.039 0.961 10 C -0.194 4.194 11 N -0.593 5.593 12 Si 0.765 3.235 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.145 1.145 16 S 2.687 3.313 17 O -0.976 6.976 18 O -0.987 6.987 19 C -0.740 4.740 20 C 0.009 3.991 21 H 0.100 0.900 22 C -0.175 4.175 23 C -0.187 4.187 24 C -0.047 4.047 25 O -0.329 6.329 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.198 0.802 41 H 0.172 0.828 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.098 0.902 45 H 0.128 0.872 46 H 0.118 0.882 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.889 22.938 9.764 25.864 hybrid contribution 0.818 -0.499 -0.057 0.959 sum -6.072 22.440 9.707 25.192 Atomic orbital electron populations 1.21950 0.95016 1.01586 1.02574 1.21078 0.96138 0.96985 0.97351 1.21787 1.00990 0.94573 1.02435 1.22155 1.02249 0.93177 0.99401 1.21514 0.99516 0.92702 0.87674 1.57153 1.25990 1.71021 1.28337 1.19192 0.80031 0.92742 0.97002 1.21705 0.94746 1.02363 1.38821 0.96112 1.25983 1.03326 0.95079 0.95029 1.70092 1.28279 1.14266 1.46701 0.85788 0.77649 0.81428 0.78622 1.19616 1.20411 1.14525 1.05319 0.73336 0.77901 0.74754 1.93571 1.80215 1.47196 1.76654 1.93462 1.39095 1.88407 1.77751 1.30751 1.11738 1.21375 1.10097 1.22667 0.96293 0.90337 0.89768 0.90047 1.23022 1.04658 0.94955 0.94855 1.23178 1.02750 0.94934 0.97845 1.23950 1.02075 0.96128 0.82577 1.89085 1.85822 1.39505 1.18486 0.91679 0.93748 0.91722 0.91696 0.92662 0.91993 0.91769 0.90334 0.90839 0.91690 0.90004 0.92331 0.94781 0.92477 0.80164 0.82774 0.87686 0.88112 0.90185 0.87203 0.88172 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.95 71.98 0.64 -2.37 16 2 C -0.10 -1.96 2.92 -10.79 -0.03 -1.99 16 3 C -0.14 -2.18 9.19 71.98 0.66 -1.52 16 4 C -0.13 -3.12 5.01 30.59 0.15 -2.97 16 5 C 0.11 3.82 5.41 86.38 0.47 4.29 16 6 N -0.99 -40.32 2.70 -519.82 -1.40 -41.73 16 7 C 0.23 11.06 4.08 85.64 0.35 11.41 16 8 C -0.54 -32.62 9.94 25.60 0.25 -32.36 16 9 H 0.02 1.44 8.06 -2.91 -0.02 1.41 16 10 C 0.00 0.17 5.47 84.65 0.46 0.63 16 11 N -0.95 -62.53 13.96 21.44 0.30 -62.23 16 12 Si 0.94 43.82 27.47 68.60 1.88 45.70 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 H -0.22 -8.77 6.54 99.48 0.65 -8.12 16 16 S 2.59 103.68 5.26 -56.49 -0.30 103.38 16 17 O -0.99 -51.18 16.63 -126.63 -2.11 -53.28 16 18 O -1.00 -42.66 16.53 -127.65 -2.11 -44.77 16 19 C -0.61 -14.88 5.65 71.98 0.41 -14.47 16 20 C 0.07 1.61 3.40 30.97 0.11 1.72 16 21 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 22 C -0.14 -1.84 6.64 31.59 0.21 -1.63 16 23 C -0.15 -1.93 7.15 31.90 0.23 -1.70 16 24 C 0.03 0.55 7.73 72.67 0.56 1.11 16 25 O -0.41 -12.30 10.69 -148.98 -1.59 -13.89 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.04 1.03 6.56 -2.38 -0.02 1.01 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.47 6.96 -2.38 -0.02 1.46 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 2.47 8.11 -2.38 -0.02 2.45 16 36 H 0.08 2.81 5.24 -2.39 -0.01 2.80 16 37 H 0.06 2.46 7.17 -2.39 -0.02 2.44 16 38 H 0.03 1.58 7.03 -2.38 -0.02 1.56 16 39 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 40 H 0.18 2.82 6.96 -2.39 -0.02 2.80 16 41 H 0.15 3.43 8.14 -2.39 -0.02 3.41 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.10 1.05 7.70 -2.39 -0.02 1.03 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.11 0.81 8.14 -2.39 -0.02 0.80 16 46 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -87.31 381.61 0.01 -87.29 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.87 Total: 19.40 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 4.47 Total: -39.87 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -1.10 Total: -103.96 kcal Atomic # 8 Polarization: -106.14 SS G_CDS: -5.81 Total: -111.95 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Atomic # 16 Polarization: 103.68 SS G_CDS: -0.30 Total: 103.38 kcal Total: -87.31 0.01 -87.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172065145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.886 kcal (2) G-P(sol) polarization free energy of solvation -87.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds