Wall clock time and date at job start Tue Mar 31 2020 12:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47189 * 2 1 4 4 C 1.52998 * 109.47319 * 240.00181 * 2 1 3 5 5 C 1.53000 * 109.47268 * 119.99730 * 2 1 3 6 6 N 1.46502 * 109.46996 * 48.24889 * 5 2 1 7 7 C 1.46506 * 119.99560 * 272.88473 * 6 5 2 8 8 C 1.50699 * 109.46688 * 274.50988 * 7 6 5 9 9 H 1.08001 * 120.00443 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99767 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99818 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00007 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46715 * 60.00733 * 12 10 8 14 14 H 1.48496 * 109.47187 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47320 * 300.01073 * 12 10 8 16 16 S 1.65598 * 120.00181 * 92.87905 * 6 5 2 17 17 O 1.42106 * 104.27154 * 123.14417 * 16 6 5 18 18 O 1.42098 * 104.27752 * 355.28996 * 16 6 5 19 19 C 1.81398 * 104.45122 * 239.21260 * 16 6 5 20 20 C 1.52998 * 109.47019 * 171.51314 * 19 16 6 21 21 H 1.08997 * 109.86911 * 58.99947 * 20 19 16 22 22 C 1.54103 * 109.87526 * 180.02562 * 20 19 16 23 23 C 1.54819 * 104.18565 * 121.45662 * 22 20 19 24 24 C 1.54995 * 102.09124 * 20.87750 * 23 22 20 25 25 O 1.43739 * 109.88053 * 297.83207 * 20 19 16 26 26 H 1.08996 * 109.47179 * 302.06232 * 1 2 3 27 27 H 1.09001 * 109.47306 * 62.06825 * 1 2 3 28 28 H 1.09001 * 109.46901 * 182.06649 * 1 2 3 29 29 H 1.09000 * 109.47209 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46696 * 300.00464 * 3 2 1 31 31 H 1.09002 * 109.47084 * 59.99279 * 3 2 1 32 32 H 1.08999 * 109.46865 * 293.12097 * 4 2 1 33 33 H 1.09005 * 109.47326 * 53.11498 * 4 2 1 34 34 H 1.08996 * 109.47268 * 173.11867 * 4 2 1 35 35 H 1.08996 * 109.47023 * 288.24755 * 5 2 1 36 36 H 1.09000 * 109.47222 * 168.24053 * 5 2 1 37 37 H 1.08994 * 109.47397 * 34.51220 * 7 6 5 38 38 H 1.08997 * 109.46799 * 154.51611 * 7 6 5 39 39 H 0.97002 * 119.99246 * 179.97438 * 11 10 8 40 40 H 1.09008 * 109.46833 * 51.51638 * 19 16 6 41 41 H 1.08996 * 109.47289 * 291.51814 * 19 16 6 42 42 H 1.08998 * 110.48651 * 240.12811 * 22 20 19 43 43 H 1.09000 * 110.49404 * 2.64957 * 22 20 19 44 44 H 1.09000 * 110.90961 * 139.07632 * 23 22 20 45 45 H 1.09005 * 110.90563 * 262.64867 * 23 22 20 46 46 H 1.08992 * 110.61798 * 81.47953 * 24 23 22 47 47 H 1.09008 * 110.61505 * 204.47626 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.3357 -1.9971 1.3983 7 6 0.0588 -2.0495 2.1147 8 6 0.3173 -2.1968 3.5920 9 1 1.3313 -2.2461 3.9605 10 6 -0.7407 -2.2677 4.4733 11 7 -1.9754 -2.2072 4.0246 12 14 -0.4202 -2.4511 6.3045 13 1 0.3715 -1.2910 6.7870 14 1 -1.7145 -2.5041 7.0306 15 1 0.3372 -3.7043 6.5515 16 16 1.9827 -3.3800 0.7570 17 8 2.0939 -4.2617 1.8659 18 8 3.1361 -2.9350 0.0563 19 6 0.7218 -3.9735 -0.4042 20 6 1.2882 -5.1362 -1.2215 21 1 1.5932 -5.9433 -0.5555 22 6 0.2242 -5.6476 -2.2122 23 6 0.8899 -5.4863 -3.6006 24 6 2.3949 -5.4295 -3.2344 25 8 2.4122 -4.6870 -1.9967 26 1 -0.3633 0.5455 0.8709 27 1 -0.3634 0.4814 -0.9079 28 1 -0.3633 -1.0270 0.0371 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.7807 -1.7782 -1.1898 33 1 1.5796 -0.2834 -2.1350 34 1 3.1230 -0.6158 -1.3129 35 1 1.8578 -0.1008 2.1267 36 1 3.1097 -0.9062 1.1508 37 1 -0.4977 -1.1300 1.9331 38 1 -0.5217 -2.9014 1.7607 39 1 -2.7197 -2.2575 4.6447 40 1 0.4355 -3.1633 -1.0750 41 1 -0.1530 -4.3118 0.1510 42 1 -0.0051 -6.6954 -2.0185 43 1 -0.6797 -5.0419 -2.1476 44 1 0.6765 -6.3455 -4.2365 45 1 0.5705 -4.5609 -4.0800 46 1 2.7919 -6.4336 -3.0856 47 1 2.9579 -4.9034 -4.0055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172098359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:42 Heat of formation + Delta-G solvation = -123.450068 kcal Electronic energy + Delta-G solvation = -27703.184183 eV Core-core repulsion = 24013.210645 eV Total energy + Delta-G solvation = -3689.973538 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.54038 -38.00204 -36.25331 -35.10662 -34.02097 -32.49801 -32.13689 -31.73454 -27.73444 -27.03185 -26.68716 -26.24296 -24.81309 -22.36534 -22.15179 -21.16399 -18.82755 -17.86756 -17.06024 -16.65276 -16.42791 -16.09545 -15.77747 -15.25784 -15.10724 -14.50871 -14.09272 -14.05953 -13.76290 -13.61998 -13.08890 -12.83651 -12.59376 -12.39697 -12.20545 -12.02375 -11.99859 -11.83302 -11.56883 -11.38510 -11.31447 -11.23829 -11.15776 -11.07523 -10.97436 -10.90490 -10.74424 -10.67048 -10.45536 -10.25740 -10.07049 -9.97988 -9.83069 -9.81355 -9.55994 -8.41223 -7.89329 -6.04599 -4.06813 0.96055 3.36486 3.39177 3.43691 3.49501 3.66273 4.28842 4.41989 4.47304 4.62665 4.70764 4.81618 4.88007 5.10086 5.18251 5.24434 5.25861 5.30896 5.31025 5.48509 5.54202 5.60289 5.68055 5.69711 5.80972 5.83577 5.92408 5.97042 5.98441 6.04792 6.18850 6.24764 6.28765 6.39690 6.55875 6.58960 6.65634 6.72465 6.77027 6.90142 7.20300 7.42521 7.66140 7.95783 8.24736 8.98736 9.58312 11.03462 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.005442 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.484633 B = 5144.159547 C = 6266.397658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 C -0.135 4.135 4 C -0.134 4.134 5 C 0.142 3.858 6 N -0.984 5.984 7 C 0.245 3.755 8 C -0.521 4.521 9 H 0.064 0.936 10 C 0.060 3.940 11 N -0.901 5.901 12 Si 0.895 3.105 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.275 1.275 16 S 2.608 3.392 17 O -0.950 6.950 18 O -0.956 6.956 19 C -0.644 4.644 20 C 0.088 3.912 21 H 0.080 0.920 22 C -0.145 4.145 23 C -0.156 4.156 24 C 0.044 3.956 25 O -0.360 6.360 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.024 0.976 39 H 0.263 0.737 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -1.572 -15.570 16.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.095 4.095 3 C -0.193 4.193 4 C -0.192 4.192 5 C 0.016 3.984 6 N -0.823 5.823 7 C 0.123 3.877 8 C -0.561 4.561 9 H 0.082 0.918 10 C -0.142 4.142 11 N -0.541 5.541 12 Si 0.723 3.277 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.200 1.200 16 S 2.700 3.300 17 O -0.940 6.940 18 O -0.946 6.946 19 C -0.770 4.770 20 C 0.028 3.972 21 H 0.098 0.902 22 C -0.183 4.183 23 C -0.194 4.194 24 C -0.032 4.032 25 O -0.279 6.279 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.442 -1.798 -15.215 15.952 hybrid contribution -0.987 -0.251 0.692 1.231 sum 3.455 -2.050 -14.524 15.069 Atomic orbital electron populations 1.21992 0.94279 1.02506 1.00782 1.21076 0.96439 0.95484 0.96450 1.21784 1.00720 0.95351 1.01469 1.21950 1.01472 0.99608 0.96129 1.21179 0.95515 0.84864 0.96862 1.57368 1.35771 1.21074 1.68090 1.19283 0.78568 0.98464 0.91344 1.21562 0.93412 1.49487 0.91617 0.91776 1.24928 0.94940 0.95164 0.99129 1.69907 0.98068 1.50996 1.35113 0.86598 0.77284 0.79007 0.84848 1.20195 1.21354 1.19993 1.05028 0.75323 0.74526 0.75137 1.93609 1.85260 1.66810 1.48354 1.93538 1.45510 1.79988 1.75522 1.30961 1.20541 1.08765 1.16707 1.22297 0.87194 0.93880 0.93782 0.90234 1.22978 0.99084 1.02443 0.93821 1.23161 0.95849 1.03070 0.97280 1.23584 0.96150 0.96713 0.86789 1.89077 1.46305 1.62622 1.29930 0.92073 0.93995 0.91827 0.92789 0.93035 0.92529 0.93409 0.93680 0.91939 0.89890 0.90756 0.93186 0.95809 0.92767 0.84496 0.83816 0.90174 0.89665 0.90141 0.90304 0.91991 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 6.97 37.16 0.26 -1.90 16 2 C -0.09 -1.42 0.86 -154.51 -0.13 -1.55 16 3 C -0.14 -1.75 8.44 37.16 0.31 -1.44 16 4 C -0.13 -2.01 7.39 37.16 0.27 -1.74 16 5 C 0.14 2.59 4.68 -4.04 -0.02 2.57 16 6 N -0.98 -20.18 2.05 -115.66 -0.24 -20.42 16 7 C 0.25 5.82 3.96 -5.19 -0.02 5.80 16 8 C -0.52 -14.36 9.39 -34.44 -0.32 -14.68 16 9 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 11 N -0.90 -25.53 13.29 55.43 0.74 -24.79 16 12 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 16 S 2.61 52.30 4.32 -107.50 -0.46 51.84 16 17 O -0.95 -23.11 17.94 -57.54 -1.03 -24.15 16 18 O -0.96 -19.53 13.20 -63.32 -0.84 -20.36 16 19 C -0.64 -10.05 4.84 37.16 0.18 -9.87 16 20 C 0.09 1.23 3.46 -26.16 -0.09 1.14 16 21 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 22 C -0.14 -1.52 6.64 -25.20 -0.17 -1.69 16 23 C -0.16 -1.39 7.15 -24.72 -0.18 -1.57 16 24 C 0.04 0.46 7.72 38.21 0.29 0.76 16 25 O -0.36 -5.39 10.07 -47.23 -0.48 -5.87 16 26 H 0.06 1.01 7.49 -51.93 -0.39 0.62 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.05 5.93 -51.93 -0.31 0.74 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.75 3.66 -51.93 -0.19 0.56 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.54 8.05 -51.93 -0.42 1.12 16 36 H 0.07 1.33 7.04 -51.93 -0.37 0.97 16 37 H 0.05 1.19 5.51 -51.93 -0.29 0.90 16 38 H 0.02 0.58 6.93 -51.93 -0.36 0.22 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.14 1.92 6.78 -51.92 -0.35 1.57 16 41 H 0.14 2.14 7.46 -51.93 -0.39 1.76 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.86 7.70 -51.93 -0.40 0.46 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -32.94 369.05 -9.55 -42.49 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.07 Total: 1.53 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 0.29 Total: -22.61 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.50 Total: -45.21 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -2.34 Total: -50.38 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 52.30 SS G_CDS: -0.46 Total: 51.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.94 -9.55 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172098359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.960 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds