Wall clock time and date at job start Tue Mar 31 2020 12:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47189 * 2 1 4 4 C 1.52998 * 109.47319 * 240.00181 * 2 1 3 5 5 C 1.53000 * 109.47268 * 119.99730 * 2 1 3 6 6 N 1.46502 * 109.46996 * 48.24889 * 5 2 1 7 7 C 1.46506 * 119.99560 * 272.88473 * 6 5 2 8 8 C 1.50699 * 109.46688 * 274.50988 * 7 6 5 9 9 H 1.08001 * 120.00443 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99767 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99818 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00007 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46715 * 60.00733 * 12 10 8 14 14 H 1.48496 * 109.47187 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47320 * 300.01073 * 12 10 8 16 16 S 1.65598 * 120.00181 * 92.87905 * 6 5 2 17 17 O 1.42106 * 104.27154 * 123.14417 * 16 6 5 18 18 O 1.42098 * 104.27752 * 355.28996 * 16 6 5 19 19 C 1.81398 * 104.45122 * 239.21260 * 16 6 5 20 20 C 1.52998 * 109.47019 * 171.51314 * 19 16 6 21 21 H 1.08997 * 109.86911 * 58.99947 * 20 19 16 22 22 C 1.54103 * 109.87526 * 180.02562 * 20 19 16 23 23 C 1.54819 * 104.18565 * 121.45662 * 22 20 19 24 24 C 1.54995 * 102.09124 * 20.87750 * 23 22 20 25 25 O 1.43739 * 109.88053 * 297.83207 * 20 19 16 26 26 H 1.08996 * 109.47179 * 302.06232 * 1 2 3 27 27 H 1.09001 * 109.47306 * 62.06825 * 1 2 3 28 28 H 1.09001 * 109.46901 * 182.06649 * 1 2 3 29 29 H 1.09000 * 109.47209 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46696 * 300.00464 * 3 2 1 31 31 H 1.09002 * 109.47084 * 59.99279 * 3 2 1 32 32 H 1.08999 * 109.46865 * 293.12097 * 4 2 1 33 33 H 1.09005 * 109.47326 * 53.11498 * 4 2 1 34 34 H 1.08996 * 109.47268 * 173.11867 * 4 2 1 35 35 H 1.08996 * 109.47023 * 288.24755 * 5 2 1 36 36 H 1.09000 * 109.47222 * 168.24053 * 5 2 1 37 37 H 1.08994 * 109.47397 * 34.51220 * 7 6 5 38 38 H 1.08997 * 109.46799 * 154.51611 * 7 6 5 39 39 H 0.97002 * 119.99246 * 179.97438 * 11 10 8 40 40 H 1.09008 * 109.46833 * 51.51638 * 19 16 6 41 41 H 1.08996 * 109.47289 * 291.51814 * 19 16 6 42 42 H 1.08998 * 110.48651 * 240.12811 * 22 20 19 43 43 H 1.09000 * 110.49404 * 2.64957 * 22 20 19 44 44 H 1.09000 * 110.90961 * 139.07632 * 23 22 20 45 45 H 1.09005 * 110.90563 * 262.64867 * 23 22 20 46 46 H 1.08992 * 110.61798 * 81.47953 * 24 23 22 47 47 H 1.09008 * 110.61505 * 204.47626 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.3357 -1.9971 1.3983 7 6 0.0588 -2.0495 2.1147 8 6 0.3173 -2.1968 3.5920 9 1 1.3313 -2.2461 3.9605 10 6 -0.7407 -2.2677 4.4733 11 7 -1.9754 -2.2072 4.0246 12 14 -0.4202 -2.4511 6.3045 13 1 0.3715 -1.2910 6.7870 14 1 -1.7145 -2.5041 7.0306 15 1 0.3372 -3.7043 6.5515 16 16 1.9827 -3.3800 0.7570 17 8 2.0939 -4.2617 1.8659 18 8 3.1361 -2.9350 0.0563 19 6 0.7218 -3.9735 -0.4042 20 6 1.2882 -5.1362 -1.2215 21 1 1.5932 -5.9433 -0.5555 22 6 0.2242 -5.6476 -2.2122 23 6 0.8899 -5.4863 -3.6006 24 6 2.3949 -5.4295 -3.2344 25 8 2.4122 -4.6870 -1.9967 26 1 -0.3633 0.5455 0.8709 27 1 -0.3634 0.4814 -0.9079 28 1 -0.3633 -1.0270 0.0371 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.7807 -1.7782 -1.1898 33 1 1.5796 -0.2834 -2.1350 34 1 3.1230 -0.6158 -1.3129 35 1 1.8578 -0.1008 2.1267 36 1 3.1097 -0.9062 1.1508 37 1 -0.4977 -1.1300 1.9331 38 1 -0.5217 -2.9014 1.7607 39 1 -2.7197 -2.2575 4.6447 40 1 0.4355 -3.1633 -1.0750 41 1 -0.1530 -4.3118 0.1510 42 1 -0.0051 -6.6954 -2.0185 43 1 -0.6797 -5.0419 -2.1476 44 1 0.6765 -6.3455 -4.2365 45 1 0.5705 -4.5609 -4.0800 46 1 2.7919 -6.4336 -3.0856 47 1 2.9579 -4.9034 -4.0055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172098359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:41 Heat of formation + Delta-G solvation = -144.964186 kcal Electronic energy + Delta-G solvation = -27704.117105 eV Core-core repulsion = 24013.210645 eV Total energy + Delta-G solvation = -3690.906461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.49083 -39.39727 -37.93799 -36.79030 -35.72162 -34.05484 -33.54414 -32.67100 -29.48306 -28.16466 -27.99632 -27.37247 -26.37793 -24.04616 -23.20325 -22.10477 -20.20106 -19.38351 -18.70877 -18.29642 -17.78090 -17.48785 -17.07105 -16.55708 -16.38242 -16.22445 -15.51666 -15.45521 -15.01693 -14.55174 -14.46741 -14.34606 -13.94372 -13.80867 -13.66867 -13.43888 -13.08732 -13.06951 -12.98974 -12.91459 -12.75650 -12.66114 -12.60349 -12.45653 -12.38320 -12.20900 -12.15938 -12.06339 -11.75076 -11.69001 -11.57419 -11.45882 -11.34080 -11.21007 -10.81654 -10.52177 -9.58088 -8.16558 -6.25319 -0.58812 1.39251 1.41871 1.49506 1.89079 2.43672 2.70581 2.88341 3.13265 3.33236 3.45138 3.64770 3.81888 3.90521 3.97317 4.01388 4.09390 4.16822 4.30988 4.39233 4.44844 4.50446 4.68411 4.77056 4.79230 4.84247 4.89277 4.94500 4.98038 5.01215 5.03150 5.07793 5.14803 5.18278 5.18757 5.28413 5.36084 5.41575 5.54950 5.58843 5.67393 5.76459 5.81147 6.01563 6.20244 6.82871 7.42218 8.89405 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.005442 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.484633 B = 5144.159547 C = 6266.397658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 C -0.132 4.132 4 C -0.133 4.133 5 C 0.134 3.866 6 N -0.988 5.988 7 C 0.259 3.741 8 C -0.543 4.543 9 H 0.044 0.956 10 C 0.018 3.982 11 N -0.921 5.921 12 Si 0.945 3.055 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.282 1.282 16 S 2.599 3.401 17 O -1.007 7.007 18 O -0.965 6.965 19 C -0.617 4.617 20 C 0.077 3.923 21 H 0.075 0.925 22 C -0.142 4.142 23 C -0.147 4.147 24 C 0.031 3.969 25 O -0.392 6.392 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.019 0.981 39 H 0.267 0.733 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 -1.460 -17.727 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.089 4.089 3 C -0.190 4.190 4 C -0.190 4.190 5 C 0.009 3.991 6 N -0.826 5.826 7 C 0.136 3.864 8 C -0.582 4.582 9 H 0.062 0.938 10 C -0.182 4.182 11 N -0.561 5.561 12 Si 0.771 3.229 13 H -0.194 1.194 14 H -0.199 1.199 15 H -0.207 1.207 16 S 2.696 3.304 17 O -0.997 6.997 18 O -0.955 6.955 19 C -0.748 4.748 20 C 0.017 3.983 21 H 0.092 0.908 22 C -0.181 4.181 23 C -0.184 4.184 24 C -0.044 4.044 25 O -0.312 6.312 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.176 0.824 41 H 0.169 0.831 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.126 0.874 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.679 -1.651 -17.342 17.805 hybrid contribution -0.689 -0.325 1.277 1.487 sum 2.990 -1.977 -16.065 16.460 Atomic orbital electron populations 1.21949 0.94311 1.01740 1.01351 1.21020 0.96319 0.96604 0.94950 1.21761 1.01144 0.93636 1.02426 1.21933 1.01298 0.99002 0.96781 1.21355 0.95358 0.84207 0.98224 1.57221 1.34678 1.21971 1.68706 1.18958 0.79776 0.98012 0.89643 1.21857 0.92582 1.49718 0.94047 0.93791 1.25573 0.94897 0.94989 1.02722 1.69964 0.98478 1.51404 1.36281 0.85808 0.77621 0.78671 0.80806 1.19439 1.19940 1.20747 1.04976 0.76330 0.73830 0.75223 1.93540 1.86656 1.67929 1.51573 1.93518 1.46798 1.79951 1.75250 1.30697 1.18309 1.10299 1.15524 1.22486 0.88509 0.92684 0.94613 0.90762 1.23023 0.98035 1.03468 0.93573 1.23165 0.94095 1.04564 0.96615 1.23911 0.97852 0.97157 0.85498 1.89047 1.46717 1.63701 1.31730 0.93631 0.91373 0.93123 0.92192 0.90930 0.92718 0.94586 0.91151 0.92509 0.91141 0.91086 0.93152 0.96329 0.92446 0.82417 0.83074 0.88352 0.89059 0.87396 0.89894 0.90823 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 6.97 71.98 0.50 -3.58 16 2 C -0.09 -2.58 0.86 -52.18 -0.04 -2.63 16 3 C -0.13 -3.18 8.44 71.98 0.61 -2.58 16 4 C -0.13 -3.76 7.39 71.98 0.53 -3.22 16 5 C 0.13 4.99 4.68 86.38 0.40 5.40 16 6 N -0.99 -41.60 2.05 -519.85 -1.07 -42.67 16 7 C 0.26 12.61 3.96 85.63 0.34 12.95 16 8 C -0.54 -30.76 9.39 25.60 0.24 -30.52 16 9 H 0.04 2.61 7.81 -2.91 -0.02 2.58 16 10 C 0.02 0.99 5.46 84.66 0.46 1.45 16 11 N -0.92 -52.40 13.29 21.45 0.28 -52.11 16 12 Si 0.95 45.08 29.54 68.60 2.03 47.11 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 16 S 2.60 106.99 4.32 -56.49 -0.24 106.75 16 17 O -1.01 -51.32 17.94 -127.65 -2.29 -53.61 16 18 O -0.96 -40.25 13.20 -122.12 -1.61 -41.87 16 19 C -0.62 -18.86 4.84 71.98 0.35 -18.51 16 20 C 0.08 2.06 3.46 30.97 0.11 2.17 16 21 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 22 C -0.14 -2.58 6.64 31.59 0.21 -2.37 16 23 C -0.15 -2.11 7.15 31.90 0.23 -1.88 16 24 C 0.03 0.58 7.72 72.66 0.56 1.15 16 25 O -0.39 -11.28 10.07 -137.50 -1.38 -12.67 16 26 H 0.04 1.49 7.49 -2.39 -0.02 1.47 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.63 5.93 -2.39 -0.01 1.62 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.09 3.66 -2.39 -0.01 1.08 16 33 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 35 H 0.07 2.73 8.05 -2.39 -0.02 2.71 16 36 H 0.07 2.64 7.04 -2.39 -0.02 2.62 16 37 H 0.05 2.44 5.51 -2.39 -0.01 2.43 16 38 H 0.02 0.92 6.93 -2.39 -0.02 0.91 16 39 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 40 H 0.16 4.17 6.78 -2.39 -0.02 4.15 16 41 H 0.15 4.42 7.46 -2.39 -0.02 4.41 16 42 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.09 1.56 7.70 -2.39 -0.02 1.54 16 44 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 46 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -72.42 369.05 1.15 -71.27 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.94 Total: 19.98 kcal Atomic # 6 Polarization: -46.69 SS G_CDS: 4.50 Total: -42.19 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -0.78 Total: -94.78 kcal Atomic # 8 Polarization: -102.85 SS G_CDS: -5.29 Total: -108.14 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 106.99 SS G_CDS: -0.24 Total: 106.75 kcal Total: -72.42 1.15 -71.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172098359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.693 kcal (2) G-P(sol) polarization free energy of solvation -72.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds