Wall clock time and date at job start Tue Mar 31 2020 13:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47114 * 2 1 4 4 C 1.52998 * 109.47073 * 120.00014 * 2 1 3 5 5 H 1.09003 * 109.48898 * 302.87072 * 4 2 1 6 6 O 1.42901 * 109.48180 * 182.85000 * 4 2 1 7 7 C 1.42904 * 114.09933 * 178.85753 * 6 4 2 8 8 C 1.53096 * 109.41441 * 61.15675 * 7 6 4 9 9 C 1.53186 * 109.16028 * 302.39175 * 8 7 6 10 10 C 1.53089 * 109.48334 * 62.90039 * 4 2 1 11 11 H 1.08995 * 109.52340 * 297.56723 * 10 4 2 12 12 C 1.53002 * 109.51841 * 57.68809 * 10 4 2 13 13 N 1.46504 * 109.47022 * 183.32546 * 12 10 4 14 14 S 1.65600 * 119.99748 * 165.00075 * 13 12 10 15 15 O 1.42093 * 104.27738 * 308.92596 * 14 13 12 16 16 O 1.42108 * 104.27155 * 181.06845 * 14 13 12 17 17 C 1.81403 * 104.45287 * 65.00096 * 14 13 12 18 18 C 1.52990 * 109.47274 * 179.97438 * 17 14 13 19 19 C 1.50701 * 109.47270 * 179.97438 * 18 17 14 20 20 H 1.08005 * 120.00158 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00012 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00248 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99922 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47389 * 59.99941 * 23 21 19 25 25 H 1.48507 * 109.47040 * 299.99868 * 23 21 19 26 26 H 1.48495 * 109.47275 * 180.02562 * 23 21 19 27 27 H 1.09000 * 109.47288 * 300.00596 * 1 2 3 28 28 H 1.09000 * 109.46984 * 60.00213 * 1 2 3 29 29 H 1.08998 * 109.47489 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46989 * 239.99842 * 2 1 3 31 31 H 1.09001 * 109.47397 * 65.27610 * 3 2 1 32 32 H 1.09007 * 109.47481 * 185.27962 * 3 2 1 33 33 H 1.09000 * 109.47456 * 305.27051 * 3 2 1 34 34 H 1.08999 * 109.48073 * 181.13784 * 7 6 4 35 35 H 1.08997 * 109.47862 * 301.16135 * 7 6 4 36 36 H 1.09004 * 109.52108 * 62.29382 * 8 7 6 37 37 H 1.08994 * 109.51961 * 182.42342 * 8 7 6 38 38 H 1.09005 * 109.53773 * 297.11311 * 9 8 7 39 39 H 1.09000 * 109.54017 * 176.85171 * 9 8 7 40 40 H 1.09002 * 109.47156 * 63.32369 * 12 10 4 41 41 H 1.09003 * 109.47379 * 303.32133 * 12 10 4 42 42 H 0.97001 * 119.99792 * 344.99499 * 13 12 10 43 43 H 1.08999 * 109.47258 * 59.99137 * 17 14 13 44 44 H 1.09010 * 109.46551 * 299.99687 * 17 14 13 45 45 H 1.09000 * 109.47200 * 59.99981 * 18 17 14 46 46 H 1.08998 * 109.47410 * 299.99826 * 18 17 14 47 47 H 0.97000 * 119.99675 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6353 -0.2382 2.1387 6 8 3.4674 -0.6637 1.2834 7 6 4.0493 -1.2886 2.4293 8 6 3.6804 -2.7744 2.4409 9 6 2.1549 -2.9138 2.4362 10 6 1.5903 -2.1842 1.2135 11 1 0.5015 -2.2311 1.2308 12 6 2.1104 -2.8478 -0.0632 13 7 1.6136 -4.2242 -0.1354 14 16 1.6982 -5.0612 -1.5617 15 8 1.1103 -4.1878 -2.5160 16 8 1.1131 -6.3215 -1.2636 17 6 3.4757 -5.2430 -1.8752 18 6 3.6873 -6.0103 -3.1818 19 6 5.1639 -6.1607 -3.4426 20 1 5.8799 -5.7504 -2.7458 21 6 5.6009 -6.8231 -4.5701 22 7 4.7291 -7.3231 -5.4183 23 14 7.4312 -7.0101 -4.8930 24 1 8.0577 -7.7571 -3.7728 25 1 8.0545 -5.6666 -5.0020 26 1 7.6366 -7.7548 -6.1612 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.7559 1.9283 0.9334 32 1 3.1259 1.4440 -0.0946 33 1 1.6016 1.9829 -0.8390 34 1 5.1335 -1.1836 2.3893 35 1 3.6711 -0.8129 3.3341 36 1 4.0932 -3.2591 1.5561 37 1 4.0873 -3.2437 3.3366 38 1 1.7458 -2.4727 3.3452 39 1 1.8854 -3.9688 2.3880 40 1 3.2004 -2.8551 -0.0508 41 1 1.7606 -2.2894 -0.9315 42 1 1.2352 -4.6451 0.6524 43 1 3.9354 -5.7918 -1.0533 44 1 3.9333 -4.2568 -1.9544 45 1 3.2276 -5.4617 -4.0039 46 1 3.2297 -6.9964 -3.1023 47 1 3.7786 -7.2256 -5.2509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175134120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:49 Heat of formation + Delta-G solvation = -154.252575 kcal Electronic energy + Delta-G solvation = -26515.981885 eV Core-core repulsion = 22824.672650 eV Total energy + Delta-G solvation = -3691.309235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.44342 -36.68404 -35.98501 -35.59083 -35.48201 -34.24003 -32.97480 -31.01452 -30.45688 -27.39999 -25.94604 -25.10846 -25.01966 -23.40298 -21.95909 -20.53216 -19.48958 -19.06466 -17.61043 -16.85490 -16.72951 -16.51022 -15.93333 -15.72643 -15.27547 -15.00033 -14.65274 -14.18255 -13.88528 -13.77464 -13.58938 -13.41327 -13.17890 -12.92445 -12.82033 -12.58421 -12.32340 -12.18737 -12.06788 -11.67826 -11.62154 -11.58964 -11.37334 -11.34891 -11.14792 -11.02016 -10.99119 -10.67482 -10.52605 -10.48737 -10.30166 -10.23562 -10.05238 -9.67269 -9.29005 -8.64243 -8.44802 -6.46311 -4.18911 0.72286 3.07494 3.39702 3.41654 3.49399 3.60770 4.16578 4.28149 4.41094 4.47348 4.48655 4.65328 4.66836 4.78367 4.83594 4.88245 5.05264 5.14685 5.15154 5.26663 5.29073 5.31142 5.40501 5.45243 5.48935 5.52638 5.58162 5.60912 5.65574 5.66658 5.71910 5.79364 5.90490 5.93254 5.99482 6.07610 6.16371 6.17529 6.35350 6.97829 7.02018 7.03837 7.10473 7.97868 8.31131 8.74034 9.53368 10.93578 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.003593 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.717059 B = 7791.855985 C = 8286.950950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.141 4.141 4 C 0.104 3.896 5 H 0.061 0.939 6 O -0.372 6.372 7 C 0.062 3.938 8 C -0.163 4.163 9 C -0.119 4.119 10 C -0.126 4.126 11 H 0.091 0.909 12 C 0.119 3.881 13 N -1.126 6.126 14 S 2.593 3.407 15 O -0.966 6.966 16 O -0.969 6.969 17 C -0.583 4.583 18 C 0.015 3.985 19 C -0.600 4.600 20 H 0.055 0.945 21 C 0.016 3.984 22 N -0.906 5.906 23 Si 1.073 2.927 24 H -0.287 1.287 25 H -0.286 1.286 26 H -0.280 1.280 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.410 0.590 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.024 0.976 46 H 0.024 0.976 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.598 15.396 18.710 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.198 4.198 4 C 0.046 3.954 5 H 0.079 0.921 6 O -0.291 6.291 7 C -0.015 4.015 8 C -0.200 4.200 9 C -0.156 4.156 10 C -0.146 4.146 11 H 0.109 0.891 12 C -0.007 4.007 13 N -0.885 5.885 14 S 2.690 3.310 15 O -0.956 6.956 16 O -0.960 6.960 17 C -0.716 4.716 18 C -0.024 4.024 19 C -0.639 4.639 20 H 0.073 0.927 21 C -0.189 4.189 22 N -0.541 5.541 23 Si 0.900 3.100 24 H -0.213 1.213 25 H -0.213 1.213 26 H -0.205 1.205 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.244 0.756 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.103 14.674 16.839 22.911 hybrid contribution -0.755 0.379 2.037 2.205 sum -5.858 15.052 18.875 24.843 Atomic orbital electron populations 1.21880 0.94211 1.02439 1.02140 1.21240 0.95773 0.96882 0.97695 1.21737 1.01920 0.94936 1.01252 1.22118 0.81605 0.93338 0.98386 0.92106 1.87954 1.19230 1.77663 1.44273 1.22558 0.98678 0.91826 0.88432 1.22265 0.96500 0.97739 1.03505 1.21631 0.95600 1.01105 0.97280 1.22023 1.01657 0.95819 0.95082 0.89109 1.21400 0.99197 0.81404 0.98704 1.55787 1.78538 1.23781 1.30366 1.05519 0.79065 0.73416 0.73021 1.93539 1.75310 1.66034 1.60750 1.93553 1.76307 1.42773 1.83336 1.30324 1.21274 1.10109 1.09928 1.19063 1.00637 0.94368 0.88341 1.21838 0.90180 1.41024 1.10843 0.92693 1.25966 1.07110 0.93168 0.92620 1.70782 1.03594 1.42637 1.37068 0.83488 0.73513 0.76548 0.76418 1.21313 1.21269 1.20550 0.92684 0.91834 0.92001 0.89589 0.93144 0.91776 0.92716 0.88815 0.93477 0.90237 0.90829 0.91647 0.91057 0.90954 0.89882 0.75592 0.86050 0.86154 0.95755 0.95813 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.91 37.16 0.33 -0.89 16 2 C -0.10 -0.90 2.39 -90.62 -0.22 -1.12 16 3 C -0.14 -1.21 8.94 37.16 0.33 -0.88 16 4 C 0.10 0.93 1.91 -26.69 -0.05 0.88 16 5 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 6 O -0.37 -3.78 9.20 -35.23 -0.32 -4.11 16 7 C 0.06 0.50 6.84 37.21 0.25 0.76 16 8 C -0.16 -1.32 5.78 -26.59 -0.15 -1.48 16 9 C -0.12 -0.94 5.42 -26.55 -0.14 -1.08 16 10 C -0.13 -1.14 2.01 -90.48 -0.18 -1.32 16 11 H 0.09 0.76 6.63 -51.93 -0.34 0.42 16 12 C 0.12 1.39 4.87 -4.04 -0.02 1.37 16 13 N -1.13 -14.43 5.75 -10.61 -0.06 -14.49 16 14 S 2.59 46.29 5.46 -107.50 -0.59 45.70 16 15 O -0.97 -19.98 17.50 -57.54 -1.01 -20.99 16 16 O -0.97 -20.06 18.08 -57.54 -1.04 -21.10 16 17 C -0.58 -11.35 6.01 37.15 0.22 -11.13 16 18 C 0.01 0.38 4.29 -27.89 -0.12 0.26 16 19 C -0.60 -16.92 9.11 -34.44 -0.31 -17.24 16 20 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 21 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 22 N -0.91 -27.85 13.65 55.43 0.76 -27.10 16 23 Si 1.07 24.98 29.90 -169.99 -5.08 19.90 16 24 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 30 H 0.09 0.92 6.16 -51.93 -0.32 0.60 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.60 7.78 -51.93 -0.40 0.20 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.76 6.55 -51.93 -0.34 0.42 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.55 6.75 -51.93 -0.35 0.20 16 40 H 0.07 0.84 6.07 -51.93 -0.32 0.53 16 41 H 0.08 1.05 5.70 -51.93 -0.30 0.75 16 42 H 0.41 4.39 7.26 -34.48 -0.25 4.14 16 43 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 44 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 45 H 0.02 0.65 8.01 -51.93 -0.42 0.23 16 46 H 0.02 0.63 8.01 -51.93 -0.42 0.22 16 47 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -35.42 372.79 -9.82 -45.24 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.94 Total: 2.81 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: -0.16 Total: -31.48 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.70 Total: -41.58 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -2.37 Total: -46.20 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Atomic # 16 Polarization: 46.29 SS G_CDS: -0.59 Total: 45.70 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.42 -9.82 -45.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175134120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.011 kcal (2) G-P(sol) polarization free energy of solvation -35.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds