Wall clock time and date at job start Tue Mar 31 2020 13:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47114 * 2 1 4 4 C 1.52998 * 109.47073 * 120.00014 * 2 1 3 5 5 H 1.09003 * 109.48898 * 302.87072 * 4 2 1 6 6 O 1.42901 * 109.48180 * 182.85000 * 4 2 1 7 7 C 1.42904 * 114.09933 * 178.85753 * 6 4 2 8 8 C 1.53096 * 109.41441 * 61.15675 * 7 6 4 9 9 C 1.53186 * 109.16028 * 302.39175 * 8 7 6 10 10 C 1.53089 * 109.48334 * 62.90039 * 4 2 1 11 11 H 1.08995 * 109.52340 * 297.56723 * 10 4 2 12 12 C 1.53002 * 109.51841 * 57.68809 * 10 4 2 13 13 N 1.46504 * 109.47022 * 183.32546 * 12 10 4 14 14 S 1.65600 * 119.99748 * 165.00075 * 13 12 10 15 15 O 1.42093 * 104.27738 * 308.92596 * 14 13 12 16 16 O 1.42108 * 104.27155 * 181.06845 * 14 13 12 17 17 C 1.81403 * 104.45287 * 65.00096 * 14 13 12 18 18 C 1.52990 * 109.47274 * 179.97438 * 17 14 13 19 19 C 1.50701 * 109.47270 * 179.97438 * 18 17 14 20 20 H 1.08005 * 120.00158 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00012 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00248 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99922 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47389 * 59.99941 * 23 21 19 25 25 H 1.48507 * 109.47040 * 299.99868 * 23 21 19 26 26 H 1.48495 * 109.47275 * 180.02562 * 23 21 19 27 27 H 1.09000 * 109.47288 * 300.00596 * 1 2 3 28 28 H 1.09000 * 109.46984 * 60.00213 * 1 2 3 29 29 H 1.08998 * 109.47489 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46989 * 239.99842 * 2 1 3 31 31 H 1.09001 * 109.47397 * 65.27610 * 3 2 1 32 32 H 1.09007 * 109.47481 * 185.27962 * 3 2 1 33 33 H 1.09000 * 109.47456 * 305.27051 * 3 2 1 34 34 H 1.08999 * 109.48073 * 181.13784 * 7 6 4 35 35 H 1.08997 * 109.47862 * 301.16135 * 7 6 4 36 36 H 1.09004 * 109.52108 * 62.29382 * 8 7 6 37 37 H 1.08994 * 109.51961 * 182.42342 * 8 7 6 38 38 H 1.09005 * 109.53773 * 297.11311 * 9 8 7 39 39 H 1.09000 * 109.54017 * 176.85171 * 9 8 7 40 40 H 1.09002 * 109.47156 * 63.32369 * 12 10 4 41 41 H 1.09003 * 109.47379 * 303.32133 * 12 10 4 42 42 H 0.97001 * 119.99792 * 344.99499 * 13 12 10 43 43 H 1.08999 * 109.47258 * 59.99137 * 17 14 13 44 44 H 1.09010 * 109.46551 * 299.99687 * 17 14 13 45 45 H 1.09000 * 109.47200 * 59.99981 * 18 17 14 46 46 H 1.08998 * 109.47410 * 299.99826 * 18 17 14 47 47 H 0.97000 * 119.99675 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6353 -0.2382 2.1387 6 8 3.4674 -0.6637 1.2834 7 6 4.0493 -1.2886 2.4293 8 6 3.6804 -2.7744 2.4409 9 6 2.1549 -2.9138 2.4362 10 6 1.5903 -2.1842 1.2135 11 1 0.5015 -2.2311 1.2308 12 6 2.1104 -2.8478 -0.0632 13 7 1.6136 -4.2242 -0.1354 14 16 1.6982 -5.0612 -1.5617 15 8 1.1103 -4.1878 -2.5160 16 8 1.1131 -6.3215 -1.2636 17 6 3.4757 -5.2430 -1.8752 18 6 3.6873 -6.0103 -3.1818 19 6 5.1639 -6.1607 -3.4426 20 1 5.8799 -5.7504 -2.7458 21 6 5.6009 -6.8231 -4.5701 22 7 4.7291 -7.3231 -5.4183 23 14 7.4312 -7.0101 -4.8930 24 1 8.0577 -7.7571 -3.7728 25 1 8.0545 -5.6666 -5.0020 26 1 7.6366 -7.7548 -6.1612 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.7559 1.9283 0.9334 32 1 3.1259 1.4440 -0.0946 33 1 1.6016 1.9829 -0.8390 34 1 5.1335 -1.1836 2.3893 35 1 3.6711 -0.8129 3.3341 36 1 4.0932 -3.2591 1.5561 37 1 4.0873 -3.2437 3.3366 38 1 1.7458 -2.4727 3.3452 39 1 1.8854 -3.9688 2.3880 40 1 3.2004 -2.8551 -0.0508 41 1 1.7606 -2.2894 -0.9315 42 1 1.2352 -4.6451 0.6524 43 1 3.9354 -5.7918 -1.0533 44 1 3.9333 -4.2568 -1.9544 45 1 3.2276 -5.4617 -4.0039 46 1 3.2297 -6.9964 -3.1023 47 1 3.7786 -7.2256 -5.2509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175134120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:49 Heat of formation + Delta-G solvation = -179.745275 kcal Electronic energy + Delta-G solvation = -26517.087332 eV Core-core repulsion = 22824.672650 eV Total energy + Delta-G solvation = -3692.414682 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.14659 -38.26929 -37.15792 -36.83925 -36.31390 -36.27782 -33.80472 -33.00100 -31.18265 -28.04868 -27.12155 -26.79448 -25.76500 -24.13560 -23.91769 -21.19953 -20.46948 -20.26222 -19.35473 -18.45013 -17.69884 -17.47341 -17.12253 -17.04803 -16.21821 -16.00348 -15.66493 -15.54326 -15.29679 -14.92329 -14.86924 -14.54422 -14.24557 -14.03220 -13.91850 -13.62060 -13.41797 -13.29978 -13.23394 -13.18834 -12.94972 -12.87360 -12.48538 -12.35476 -12.31415 -12.18102 -12.03224 -12.01059 -11.89711 -11.84480 -11.67064 -11.32601 -10.92617 -10.82165 -10.63183 -10.45007 -10.18134 -8.76294 -6.50295 -0.78543 1.52411 1.61097 1.74587 1.80498 2.53595 2.68273 2.85101 3.08339 3.15933 3.56052 3.70836 3.78990 3.84389 3.97700 4.02633 4.12348 4.17582 4.19359 4.31680 4.42154 4.44478 4.52054 4.55240 4.61271 4.75527 4.77204 4.83799 4.85698 4.93651 4.99391 5.02475 5.03044 5.06896 5.13158 5.15795 5.24967 5.31946 5.37112 5.47006 5.49841 5.79966 6.05985 6.07286 6.38965 6.43493 7.32584 8.63449 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.003593 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.717059 B = 7791.855985 C = 8286.950950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.137 4.137 4 C 0.106 3.894 5 H 0.079 0.921 6 O -0.393 6.393 7 C 0.058 3.942 8 C -0.163 4.163 9 C -0.119 4.119 10 C -0.121 4.121 11 H 0.101 0.899 12 C 0.111 3.889 13 N -1.103 6.103 14 S 2.623 3.377 15 O -0.995 6.995 16 O -0.997 6.997 17 C -0.585 4.585 18 C 0.004 3.996 19 C -0.614 4.614 20 H 0.066 0.934 21 C -0.041 4.041 22 N -0.935 5.935 23 Si 1.122 2.878 24 H -0.264 1.264 25 H -0.265 1.265 26 H -0.284 1.284 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.424 0.576 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.003 0.997 46 H 0.004 0.996 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 16.585 21.302 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.195 4.195 4 C 0.048 3.952 5 H 0.097 0.903 6 O -0.312 6.312 7 C -0.019 4.019 8 C -0.201 4.201 9 C -0.156 4.156 10 C -0.142 4.142 11 H 0.119 0.881 12 C -0.015 4.015 13 N -0.866 5.866 14 S 2.719 3.281 15 O -0.985 6.985 16 O -0.987 6.987 17 C -0.716 4.716 18 C -0.034 4.034 19 C -0.653 4.653 20 H 0.084 0.916 21 C -0.238 4.238 22 N -0.572 5.572 23 Si 0.942 3.058 24 H -0.189 1.189 25 H -0.190 1.190 26 H -0.209 1.209 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.262 0.738 43 H 0.159 0.841 44 H 0.155 0.845 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.432 15.862 19.456 25.490 hybrid contribution -1.007 0.080 1.294 1.642 sum -5.438 15.942 20.750 26.726 Atomic orbital electron populations 1.21864 0.93368 1.02326 1.02904 1.21265 0.96512 0.97079 0.97186 1.21696 1.01048 0.94731 1.02001 1.22147 0.81275 0.93076 0.98714 0.90310 1.87938 1.19862 1.78027 1.45391 1.22692 0.98948 0.91798 0.88436 1.22273 0.96718 0.97738 1.03367 1.21673 0.95388 1.01204 0.97335 1.22032 1.02225 0.95873 0.94023 0.88127 1.21606 0.99467 0.80287 1.00108 1.55254 1.78184 1.23950 1.29213 1.04341 0.77681 0.72630 0.73466 1.93503 1.75506 1.66692 1.62768 1.93509 1.76538 1.44647 1.84016 1.30265 1.23777 1.10310 1.07293 1.18981 0.99416 0.94041 0.91001 1.22319 0.91657 1.40352 1.10949 0.91570 1.27646 1.11188 0.92436 0.92567 1.70923 1.03094 1.44768 1.38375 0.82893 0.68361 0.77791 0.76795 1.18908 1.19006 1.20940 0.90962 0.92081 0.92513 0.91760 0.91920 0.93024 0.92513 0.88524 0.91827 0.92003 0.89383 0.89685 0.90836 0.90765 0.90992 0.73818 0.84059 0.84527 0.97858 0.97783 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.91 71.98 0.64 -1.54 16 2 C -0.10 -1.76 2.39 -10.80 -0.03 -1.79 16 3 C -0.14 -2.19 8.94 71.98 0.64 -1.55 16 4 C 0.11 1.67 1.91 30.62 0.06 1.73 16 5 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 6 O -0.39 -7.30 9.20 -148.98 -1.37 -8.67 16 7 C 0.06 0.80 6.84 72.01 0.49 1.29 16 8 C -0.16 -2.25 5.78 30.69 0.18 -2.07 16 9 C -0.12 -1.51 5.42 30.71 0.17 -1.34 16 10 C -0.12 -1.92 2.01 -10.71 -0.02 -1.94 16 11 H 0.10 1.42 6.63 -2.39 -0.02 1.40 16 12 C 0.11 2.45 4.87 86.38 0.42 2.87 16 13 N -1.10 -26.74 5.75 -187.47 -1.08 -27.82 16 14 S 2.62 93.47 5.46 -56.49 -0.31 93.16 16 15 O -0.99 -41.67 17.50 -127.65 -2.23 -43.90 16 16 O -1.00 -41.26 18.08 -127.65 -2.31 -43.57 16 17 C -0.58 -22.68 6.01 71.98 0.43 -22.24 16 18 C 0.00 0.23 4.29 29.84 0.13 0.36 16 19 C -0.61 -34.87 9.11 25.60 0.23 -34.64 16 20 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 21 C -0.04 -2.37 5.46 84.65 0.46 -1.91 16 22 N -0.93 -59.04 13.65 21.45 0.29 -58.74 16 23 Si 1.12 49.62 29.90 68.60 2.05 51.67 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.89 6.56 -2.39 -0.02 0.87 16 30 H 0.06 1.38 6.16 -2.39 -0.01 1.37 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.94 7.78 -2.38 -0.02 0.92 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 1.07 6.55 -2.39 -0.02 1.05 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.07 0.91 6.75 -2.39 -0.02 0.89 16 40 H 0.07 1.64 6.07 -2.39 -0.01 1.63 16 41 H 0.07 1.79 5.70 -2.39 -0.01 1.78 16 42 H 0.42 8.18 7.26 -96.74 -0.70 7.48 16 43 H 0.14 4.85 8.14 -2.39 -0.02 4.83 16 44 H 0.14 4.79 8.14 -2.38 -0.02 4.77 16 45 H 0.00 0.18 8.01 -2.39 -0.02 0.16 16 46 H 0.00 0.22 8.01 -2.39 -0.02 0.20 16 47 H 0.25 16.38 7.22 -92.71 -0.67 15.71 16 Total: -1.00 -77.31 372.79 -0.80 -78.11 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.35 Total: 22.54 kcal Atomic # 6 Polarization: -66.58 SS G_CDS: 3.81 Total: -62.77 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -0.79 Total: -86.56 kcal Atomic # 8 Polarization: -90.23 SS G_CDS: -5.91 Total: -96.14 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.05 Total: 51.67 kcal Atomic # 16 Polarization: 93.47 SS G_CDS: -0.31 Total: 93.16 kcal Total: -77.31 -0.80 -78.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175134120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.636 kcal (2) G-P(sol) polarization free energy of solvation -77.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds