Wall clock time and date at job start Tue Mar 31 2020 12:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46612 * 2 1 4 4 C 1.52996 * 109.46949 * 119.99862 * 2 1 3 5 5 C 1.50702 * 109.47159 * 300.00134 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 H 1.09001 * 109.46948 * 35.00281 * 8 7 5 10 10 C 1.52999 * 109.47481 * 154.99940 * 8 7 5 11 11 C 1.50698 * 109.47141 * 295.00678 * 10 8 7 12 12 H 1.07994 * 120.00042 * 359.97438 * 11 10 8 13 13 C 1.37877 * 119.99710 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00499 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46718 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.46965 * 120.00061 * 15 13 11 18 18 H 1.48496 * 109.46986 * 240.00332 * 15 13 11 19 19 C 1.50700 * 109.47514 * 275.00337 * 8 7 5 20 20 C 1.38235 * 119.99909 * 319.72923 * 19 8 7 21 21 C 1.38235 * 120.00203 * 179.78500 * 20 19 8 22 22 C 1.38243 * 119.99736 * 0.43880 * 21 20 19 23 23 C 1.38244 * 119.99802 * 359.81374 * 22 21 20 24 24 C 1.38234 * 120.00041 * 359.97438 * 23 22 21 25 25 C 1.50697 * 109.47135 * 240.00216 * 2 1 3 26 26 O 1.20833 * 119.99747 * 239.99397 * 25 2 1 27 27 O 1.34223 * 120.00490 * 60.00170 * 25 2 1 28 28 H 1.08994 * 109.47439 * 300.00090 * 1 2 3 29 29 H 1.09001 * 109.47432 * 60.00364 * 1 2 3 30 30 H 1.09008 * 109.46768 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46527 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46925 * 299.99946 * 3 2 1 33 33 H 1.09003 * 109.47167 * 60.00057 * 3 2 1 34 34 H 1.09004 * 109.47066 * 180.02562 * 4 2 1 35 35 H 1.08994 * 109.47405 * 60.00167 * 4 2 1 36 36 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 37 37 H 1.09006 * 109.46798 * 55.00299 * 10 8 7 38 38 H 1.08995 * 109.47322 * 174.99759 * 10 8 7 39 39 H 0.96993 * 120.00753 * 179.97438 * 14 13 11 40 40 H 1.08003 * 119.99755 * 359.97438 * 20 19 8 41 41 H 1.07999 * 120.00430 * 180.26737 * 21 20 19 42 42 H 1.07994 * 120.00105 * 179.82908 * 22 21 20 43 43 H 1.07997 * 119.99648 * 180.02562 * 23 22 21 44 44 H 1.07994 * 119.99956 * 180.02562 * 24 23 22 45 45 H 0.96696 * 116.99958 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5376 -0.0108 2.4797 6 8 0.8399 0.9750 2.3684 7 7 1.8585 -0.4745 3.7038 8 6 1.3652 0.2126 4.8999 9 1 0.3666 0.6048 4.7077 10 6 1.3095 -0.7737 6.0682 11 6 0.2901 -1.8439 5.7741 12 1 -0.2631 -1.8224 4.8468 13 6 0.0636 -2.8503 6.6888 14 7 0.7369 -2.8763 7.8183 15 14 -1.2006 -4.1765 6.3246 16 1 -1.8167 -3.9219 4.9975 17 1 -0.5361 -5.5044 6.3147 18 1 -2.2535 -4.1575 7.3715 19 6 2.2932 1.3486 5.2455 20 6 3.6608 1.1828 5.1323 21 6 4.5119 2.2262 5.4449 22 6 3.9956 3.4328 5.8795 23 6 2.6280 3.5969 5.9976 24 6 1.7769 2.5548 5.6808 25 6 2.0323 -0.7103 -1.2305 26 8 2.7271 -1.6927 -1.1196 27 8 1.7082 -0.2518 -2.4496 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7488 1.2493 36 1 2.4163 -1.2631 3.7929 37 1 2.2891 -1.2325 6.2034 38 1 1.0279 -0.2438 6.9781 39 1 0.5773 -3.5841 8.4619 40 1 4.0644 0.2388 4.7967 41 1 5.5803 2.0981 5.3524 42 1 4.6605 4.2471 6.1264 43 1 2.2247 4.5396 6.3367 44 1 0.7085 2.6832 5.7727 45 1 2.0536 -0.7410 -3.2087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178529255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:07 Heat of formation + Delta-G solvation = -138.417025 kcal Electronic energy + Delta-G solvation = -27319.452597 eV Core-core repulsion = 23493.386091 eV Total energy + Delta-G solvation = -3826.066506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.89105 -40.90301 -39.80196 -37.31288 -37.04448 -35.98558 -34.69633 -32.70047 -31.67284 -30.58330 -29.11701 -28.29138 -26.55541 -25.35255 -23.77473 -23.36908 -22.27723 -21.15946 -20.51764 -18.89566 -18.65703 -18.19547 -17.67195 -16.93383 -16.79118 -16.76188 -16.34650 -16.32858 -15.82976 -15.37299 -15.08096 -14.76981 -14.63678 -14.42914 -14.16736 -14.11168 -13.95826 -13.64689 -13.43875 -13.14790 -12.95184 -12.82717 -12.62811 -12.56299 -12.52300 -12.40253 -12.08475 -12.03108 -12.01879 -11.83054 -11.55980 -11.47001 -11.27574 -10.63988 -10.45714 -9.87994 -9.72008 -9.48587 -8.19542 -6.29159 0.54354 0.59159 1.15860 1.38546 1.41406 1.52228 1.74700 1.89734 2.40290 2.56052 3.01457 3.15406 3.42737 3.77739 3.86549 4.02136 4.07093 4.14605 4.24141 4.35321 4.37067 4.50820 4.56980 4.59801 4.69268 4.79518 4.80483 4.82556 4.86998 4.89541 5.01173 5.16021 5.22900 5.25936 5.39573 5.42836 5.49722 5.57310 5.64421 5.67096 5.68766 5.80203 5.95512 6.17942 6.22852 6.73613 6.84400 6.98022 7.38941 7.41048 8.91414 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008198 B = 0.005049 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3414.465174 B = 5544.135471 C = 8182.550878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.032 4.032 3 C -0.145 4.145 4 C -0.121 4.121 5 C 0.517 3.483 6 O -0.560 6.560 7 N -0.699 5.699 8 C 0.202 3.798 9 H 0.064 0.936 10 C 0.036 3.964 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.010 3.990 14 N -0.927 5.927 15 Si 0.954 3.046 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.282 1.282 19 C -0.095 4.095 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.130 4.130 25 C 0.499 3.501 26 O -0.544 6.544 27 O -0.504 6.504 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.406 0.594 37 H 0.010 0.990 38 H 0.003 0.997 39 H 0.263 0.737 40 H 0.119 0.881 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.114 0.886 45 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 9.415 -15.023 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 C -0.202 4.202 4 C -0.160 4.160 5 C 0.304 3.696 6 O -0.441 6.441 7 N -0.348 5.348 8 C 0.097 3.903 9 H 0.082 0.918 10 C -0.002 4.002 11 C -0.563 4.563 12 H 0.074 0.926 13 C -0.188 4.188 14 N -0.567 5.567 15 Si 0.780 3.220 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.208 1.208 19 C -0.096 4.096 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.148 4.148 23 C -0.141 4.141 24 C -0.149 4.149 25 C 0.342 3.658 26 O -0.435 6.435 27 O -0.317 6.317 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.242 0.758 37 H 0.028 0.972 38 H 0.021 0.979 39 H 0.072 0.928 40 H 0.137 0.863 41 H 0.161 0.839 42 H 0.167 0.833 43 H 0.160 0.840 44 H 0.132 0.868 45 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 5.637 9.949 -14.591 18.538 hybrid contribution -0.293 -1.835 -0.062 1.859 sum 5.344 8.114 -14.653 17.582 Atomic orbital electron populations 1.22056 0.91051 1.02529 1.04942 1.20101 0.98560 0.96915 0.87822 1.22026 1.00801 0.92441 1.04898 1.21547 1.03729 1.00519 0.90253 1.20626 0.79815 0.84255 0.84858 1.90532 1.39231 1.27715 1.86609 1.45906 1.52681 1.31321 1.04848 1.19700 0.94681 0.90410 0.85473 0.91826 1.19149 0.96425 0.92720 0.91874 1.21438 1.21738 1.09491 1.03645 0.92598 1.25763 0.97974 1.00222 0.94849 1.70073 1.42787 1.34419 1.09440 0.85562 0.79071 0.79115 0.78276 1.19159 1.20384 1.20835 1.20428 0.95127 0.95170 0.98894 1.21063 0.92653 0.99595 1.00685 1.21417 1.00462 0.93238 0.99214 1.21451 0.95366 0.98133 0.99808 1.21378 0.93976 0.98946 0.99835 1.21163 1.00195 0.93345 1.00179 1.23332 0.75759 0.81318 0.85381 1.90716 1.37468 1.27457 1.87836 1.84485 1.71791 1.58812 1.16598 0.89906 0.90282 0.92853 0.92298 0.90445 0.89878 0.87049 0.87891 0.75825 0.97189 0.97896 0.92811 0.86317 0.83882 0.83340 0.83961 0.86789 0.71028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.11 71.98 0.58 -3.04 16 2 C -0.03 -0.77 0.71 -52.93 -0.04 -0.81 16 3 C -0.14 -3.27 8.11 71.98 0.58 -2.69 16 4 C -0.12 -3.14 4.06 29.85 0.12 -3.02 16 5 C 0.52 16.72 7.20 87.66 0.63 17.35 16 6 O -0.56 -20.38 11.01 -3.04 -0.03 -20.42 16 7 N -0.70 -24.42 4.04 -446.09 -1.80 -26.22 16 8 C 0.20 8.22 2.11 44.25 0.09 8.32 16 9 H 0.06 2.85 7.44 -2.39 -0.02 2.84 16 10 C 0.04 1.76 4.49 29.85 0.13 1.89 16 11 C -0.53 -28.00 8.84 25.60 0.23 -27.77 16 12 H 0.06 2.96 7.74 -2.91 -0.02 2.93 16 13 C 0.01 0.57 5.46 84.65 0.46 1.03 16 14 N -0.93 -53.92 13.29 21.45 0.28 -53.64 16 15 Si 0.95 43.23 29.54 68.60 2.03 45.25 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 C -0.09 -3.47 4.91 -19.87 -0.10 -3.56 16 20 C -0.12 -3.92 9.32 22.27 0.21 -3.71 16 21 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 22 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 23 C -0.12 -3.39 10.05 22.27 0.22 -3.17 16 24 C -0.13 -4.42 9.67 22.27 0.22 -4.21 16 25 C 0.50 11.13 6.92 71.23 0.49 11.62 16 26 O -0.54 -15.00 16.74 21.94 0.37 -14.63 16 27 O -0.50 -7.94 13.23 -51.34 -0.68 -8.61 16 28 H 0.08 2.44 5.51 -2.39 -0.01 2.43 16 29 H 0.08 1.64 8.11 -2.39 -0.02 1.62 16 30 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.51 8.11 -2.39 -0.02 1.49 16 33 H 0.08 2.30 5.51 -2.39 -0.01 2.29 16 34 H 0.11 2.60 8.10 -2.38 -0.02 2.58 16 35 H 0.10 2.68 8.10 -2.39 -0.02 2.66 16 36 H 0.41 13.30 8.60 -92.71 -0.80 12.50 16 37 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.12 3.64 7.73 -2.91 -0.02 3.61 16 41 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 42 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 43 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 44 H 0.11 3.84 8.04 -2.91 -0.02 3.82 16 45 H 0.43 2.85 9.10 -74.06 -0.67 2.18 16 Total: -1.00 -68.46 376.37 3.99 -64.47 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.46 Total: 31.67 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 4.29 Total: -17.86 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -1.52 Total: -79.86 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -0.35 Total: -43.67 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -68.46 3.99 -64.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178529255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.951 kcal (2) G-P(sol) polarization free energy of solvation -68.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds