Wall clock time and date at job start Tue Mar 31 2020 12:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34233 * 116.99698 * 2 1 4 4 O 1.20826 * 120.00058 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99566 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.46973 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47192 * 59.99496 * 6 5 3 8 8 C 1.53007 * 109.47087 * 299.99794 * 6 5 3 9 9 C 1.52997 * 109.47496 * 179.97438 * 6 5 3 10 10 C 1.50699 * 109.47437 * 179.97438 * 9 6 5 11 11 O 1.21281 * 119.99841 * 357.69120 * 10 9 6 12 12 N 1.34770 * 120.00115 * 177.68281 * 10 9 6 13 13 C 1.37147 * 119.99958 * 5.76440 * 12 10 9 14 14 H 1.07998 * 119.99909 * 55.48612 * 13 12 10 15 15 C 1.38892 * 119.99545 * 235.48539 * 13 12 10 16 16 N 1.31416 * 120.00287 * 9.48257 * 15 13 12 17 17 Si 1.86796 * 119.99508 * 189.47773 * 15 13 12 18 18 H 1.48506 * 109.47420 * 90.00194 * 17 15 13 19 19 H 1.48502 * 109.47207 * 209.99888 * 17 15 13 20 20 H 1.48496 * 109.47612 * 330.00040 * 17 15 13 21 21 C 1.39786 * 120.00365 * 185.75573 * 12 10 9 22 22 C 1.38955 * 120.07909 * 175.30100 * 21 12 10 23 23 C 1.38092 * 119.92281 * 179.97438 * 22 21 12 24 24 C 1.38311 * 120.07619 * 0.02562 * 23 22 21 25 25 C 1.38308 * 120.15483 * 359.97438 * 24 23 22 26 26 C 1.38085 * 120.08079 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.46632 * 300.00112 * 1 2 3 28 28 H 1.08996 * 109.47150 * 60.00402 * 1 2 3 29 29 H 1.09004 * 109.46760 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47230 * 59.99664 * 5 3 2 31 31 H 1.08999 * 109.47173 * 299.99280 * 5 3 2 32 32 H 1.09001 * 109.47206 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47068 * 300.00330 * 7 6 5 34 34 H 1.08999 * 109.47072 * 60.00444 * 7 6 5 35 35 H 1.09000 * 109.47146 * 300.00150 * 8 6 5 36 36 H 1.09003 * 109.46680 * 59.99956 * 8 6 5 37 37 H 1.08997 * 109.47219 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.46845 * 59.99783 * 9 6 5 39 39 H 1.09003 * 109.46995 * 300.00205 * 9 6 5 40 40 H 0.97000 * 120.00049 * 184.98965 * 16 15 13 41 41 H 1.07997 * 120.04301 * 359.70899 * 22 21 12 42 42 H 1.07996 * 119.96293 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.92391 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.95936 * 180.02562 * 25 24 23 45 45 H 1.07995 * 120.04426 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 6 3.4535 3.4360 1.2481 8 6 3.4527 3.4354 -1.2504 9 6 5.5280 2.8223 -0.0011 10 6 5.9553 4.2674 -0.0022 11 8 5.1208 5.1464 -0.0453 12 7 7.2647 4.5830 0.0448 13 6 8.2116 3.5934 -0.0256 14 1 8.2128 2.9055 -0.8581 15 6 9.1689 3.4759 0.9739 16 7 9.0602 4.1856 2.0746 17 14 10.6107 2.3091 0.7534 18 1 11.7358 3.0292 0.1045 19 1 11.0461 1.8040 2.0803 20 1 10.1969 1.1663 -0.0997 21 6 7.6578 5.9191 0.1652 22 6 9.0020 6.2390 0.3120 23 6 9.3868 7.5600 0.4301 24 6 8.4359 8.5640 0.4029 25 6 7.0970 8.2492 0.2570 26 6 6.7051 6.9304 0.1383 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9558 0.7809 -0.8908 31 1 3.9564 0.7807 0.8892 32 1 3.7629 4.4812 1.2480 33 1 2.3650 3.3789 1.2485 34 1 3.8435 2.9422 2.1381 35 1 3.8421 2.9410 -2.1404 36 1 2.3641 3.3783 -1.2499 37 1 3.7613 4.4807 -1.2506 38 1 5.9178 2.3278 -0.8908 39 1 5.9177 2.3285 0.8892 40 1 9.7648 4.1586 2.7406 41 1 9.7446 5.4553 0.3380 42 1 10.4313 7.8093 0.5447 43 1 8.7395 9.5962 0.4959 44 1 6.3572 9.0357 0.2357 45 1 5.6595 6.6852 0.0248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182398619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:16 Heat of formation + Delta-G solvation = -72.673289 kcal Electronic energy + Delta-G solvation = -27820.635652 eV Core-core repulsion = 23997.420008 eV Total energy + Delta-G solvation = -3823.215643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.72098 -39.81157 -37.86882 -36.77067 -35.43536 -34.82966 -31.97234 -29.82679 -29.54417 -28.97682 -27.03968 -26.83964 -26.67501 -25.13464 -22.03921 -21.49225 -21.01375 -19.57741 -18.64087 -17.69828 -17.22586 -16.51111 -16.43245 -16.05056 -15.56253 -15.14532 -14.57871 -14.49027 -14.11636 -14.01086 -13.78693 -13.35600 -13.18012 -12.97461 -12.50380 -12.40247 -12.17514 -12.10795 -12.02817 -11.64356 -11.57665 -11.33333 -11.21737 -11.12788 -10.94132 -10.87438 -10.67683 -10.56172 -10.45760 -10.34841 -10.18871 -9.99650 -9.66936 -9.16760 -8.73271 -7.94541 -7.76960 -6.87614 -6.30551 -4.55190 2.28935 2.44323 2.58662 2.74105 3.02109 3.10957 3.12688 3.76008 3.95328 4.48759 4.73147 4.78796 4.98843 5.04759 5.12622 5.16598 5.18670 5.35772 5.47580 5.71195 5.77743 5.84963 5.88909 5.95483 6.13140 6.18133 6.25805 6.27040 6.37471 6.48938 6.57213 6.61346 6.73252 6.76407 6.81088 6.93918 7.06520 7.10254 7.22872 7.25086 7.53318 7.65761 7.71280 7.81721 7.87699 8.06713 8.45559 8.85111 9.27406 9.65148 10.46494 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.004081 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.117832 B = 6860.160298 C = 8393.081361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.460 3.540 4 O -0.492 6.492 5 C -0.106 4.106 6 C -0.033 4.033 7 C -0.161 4.161 8 C -0.164 4.164 9 C -0.107 4.107 10 C 0.499 3.501 11 O -0.555 6.555 12 N -0.385 5.385 13 C -0.368 4.368 14 H 0.093 0.907 15 C 0.057 3.943 16 N -0.840 5.840 17 Si 0.912 3.088 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.265 1.265 21 C 0.185 3.815 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.175 4.175 25 C -0.121 4.121 26 C -0.193 4.193 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.274 0.726 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.672 -6.635 -2.977 10.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.304 3.696 4 O -0.379 6.379 5 C -0.144 4.144 6 C -0.033 4.033 7 C -0.218 4.218 8 C -0.221 4.221 9 C -0.147 4.147 10 C 0.292 3.708 11 O -0.440 6.440 12 N -0.092 5.092 13 C -0.495 4.495 14 H 0.110 0.890 15 C -0.153 4.153 16 N -0.472 5.472 17 Si 0.738 3.262 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.189 1.189 21 C 0.088 3.912 22 C -0.128 4.128 23 C -0.143 4.143 24 C -0.194 4.194 25 C -0.140 4.140 26 C -0.212 4.212 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.265 -6.035 -2.766 10.601 hybrid contribution 1.004 -0.599 0.230 1.192 sum -7.260 -6.634 -2.536 10.156 Atomic orbital electron populations 1.23199 0.76923 1.03281 1.02437 1.86532 1.23055 1.34226 1.84503 1.23964 0.92442 0.80971 0.72232 1.90584 1.67278 1.35684 1.44331 1.21605 0.86823 1.00391 1.05544 1.20114 0.94162 0.90834 0.98225 1.22267 1.01590 1.03293 0.94623 1.22338 1.01679 1.03642 0.94412 1.21393 0.93631 0.95339 1.04337 1.20739 0.82094 0.90805 0.77154 1.90065 1.51887 1.48970 1.53087 1.41019 1.04705 1.03629 1.59822 1.19313 1.11035 1.11321 1.07841 0.88978 1.25601 0.99534 0.96631 0.93560 1.70031 1.32419 1.38442 1.06343 0.86157 0.81282 0.80689 0.78120 1.19805 1.20587 1.18902 1.18298 0.92918 0.84405 0.95624 1.21031 0.95662 0.95636 1.00507 1.20764 0.98061 0.93039 1.02451 1.20781 0.93790 0.97776 1.07099 1.20873 0.95120 0.96175 1.01820 1.22831 1.03346 0.91398 1.03661 0.92045 0.92054 0.88478 0.87830 0.87739 0.89519 0.91476 0.94328 0.94566 0.91507 0.89038 0.89672 0.88810 0.91535 0.85176 0.87906 0.88294 0.87820 0.80692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.38 16 2 O -0.37 -4.37 10.57 -39.27 -0.41 -4.78 16 3 C 0.46 6.27 7.37 36.01 0.27 6.53 16 4 O -0.49 -7.84 11.10 -18.75 -0.21 -8.05 16 5 C -0.11 -1.36 4.88 -27.88 -0.14 -1.49 16 6 C -0.03 -0.53 0.51 -154.51 -0.08 -0.61 16 7 C -0.16 -2.83 7.88 37.16 0.29 -2.53 16 8 C -0.16 -2.74 7.88 37.16 0.29 -2.45 16 9 C -0.11 -1.93 3.58 -27.89 -0.10 -2.03 16 10 C 0.50 11.04 6.98 -10.99 -0.08 10.97 16 11 O -0.55 -12.61 7.74 5.56 0.04 -12.57 16 12 N -0.38 -9.29 2.62 -58.98 -0.15 -9.45 16 13 C -0.37 -8.69 7.64 -14.93 -0.11 -8.80 16 14 H 0.09 2.06 7.76 -52.49 -0.41 1.66 16 15 C 0.06 1.33 3.48 -17.49 -0.06 1.27 16 16 N -0.84 -21.29 11.40 55.49 0.63 -20.66 16 17 Si 0.91 18.09 29.57 -169.99 -5.03 13.06 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 21 C 0.18 4.56 6.05 -83.70 -0.51 4.06 16 22 C -0.11 -2.57 7.87 -39.37 -0.31 -2.88 16 23 C -0.12 -2.63 10.04 -39.61 -0.40 -3.03 16 24 C -0.18 -3.51 10.04 -39.53 -0.40 -3.91 16 25 C -0.12 -2.53 10.04 -39.61 -0.40 -2.93 16 26 C -0.19 -4.52 9.06 -39.37 -0.36 -4.88 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.76 5.60 -51.93 -0.29 1.47 16 33 H 0.07 1.17 5.52 -51.93 -0.29 0.88 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 1.13 5.52 -51.93 -0.29 0.84 16 37 H 0.09 1.76 5.43 -51.93 -0.28 1.48 16 38 H 0.08 1.41 8.01 -51.93 -0.42 0.99 16 39 H 0.09 1.71 8.11 -51.93 -0.42 1.29 16 40 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 41 H 0.13 3.21 5.15 -52.49 -0.27 2.94 16 42 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.18 4.19 4.50 -56.38 -0.25 3.94 16 LS Contribution 353.24 15.07 5.32 5.32 Total: -1.00 -28.11 353.24 -7.10 -35.21 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -6.28 Total: 13.25 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.01 Total: -11.32 kcal Atomic # 7 Polarization: -30.59 SS G_CDS: 0.48 Total: -30.11 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.58 Total: -25.40 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.11 -7.10 -35.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182398619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.465 kcal (2) G-P(sol) polarization free energy of solvation -28.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds