Wall clock time and date at job start Tue Mar 31 2020 12:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34233 * 116.99698 * 2 1 4 4 O 1.20826 * 120.00058 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99566 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.46973 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47192 * 59.99496 * 6 5 3 8 8 C 1.53007 * 109.47087 * 299.99794 * 6 5 3 9 9 C 1.52997 * 109.47496 * 179.97438 * 6 5 3 10 10 C 1.50699 * 109.47437 * 179.97438 * 9 6 5 11 11 O 1.21281 * 119.99841 * 357.69120 * 10 9 6 12 12 N 1.34770 * 120.00115 * 177.68281 * 10 9 6 13 13 C 1.37147 * 119.99958 * 5.76440 * 12 10 9 14 14 H 1.07998 * 119.99909 * 55.48612 * 13 12 10 15 15 C 1.38892 * 119.99545 * 235.48539 * 13 12 10 16 16 N 1.31416 * 120.00287 * 9.48257 * 15 13 12 17 17 Si 1.86796 * 119.99508 * 189.47773 * 15 13 12 18 18 H 1.48506 * 109.47420 * 90.00194 * 17 15 13 19 19 H 1.48502 * 109.47207 * 209.99888 * 17 15 13 20 20 H 1.48496 * 109.47612 * 330.00040 * 17 15 13 21 21 C 1.39786 * 120.00365 * 185.75573 * 12 10 9 22 22 C 1.38955 * 120.07909 * 175.30100 * 21 12 10 23 23 C 1.38092 * 119.92281 * 179.97438 * 22 21 12 24 24 C 1.38311 * 120.07619 * 0.02562 * 23 22 21 25 25 C 1.38308 * 120.15483 * 359.97438 * 24 23 22 26 26 C 1.38085 * 120.08079 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.46632 * 300.00112 * 1 2 3 28 28 H 1.08996 * 109.47150 * 60.00402 * 1 2 3 29 29 H 1.09004 * 109.46760 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47230 * 59.99664 * 5 3 2 31 31 H 1.08999 * 109.47173 * 299.99280 * 5 3 2 32 32 H 1.09001 * 109.47206 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47068 * 300.00330 * 7 6 5 34 34 H 1.08999 * 109.47072 * 60.00444 * 7 6 5 35 35 H 1.09000 * 109.47146 * 300.00150 * 8 6 5 36 36 H 1.09003 * 109.46680 * 59.99956 * 8 6 5 37 37 H 1.08997 * 109.47219 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.46845 * 59.99783 * 9 6 5 39 39 H 1.09003 * 109.46995 * 300.00205 * 9 6 5 40 40 H 0.97000 * 120.00049 * 184.98965 * 16 15 13 41 41 H 1.07997 * 120.04301 * 359.70899 * 22 21 12 42 42 H 1.07996 * 119.96293 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.92391 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.95936 * 180.02562 * 25 24 23 45 45 H 1.07995 * 120.04426 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 6 3.4535 3.4360 1.2481 8 6 3.4527 3.4354 -1.2504 9 6 5.5280 2.8223 -0.0011 10 6 5.9553 4.2674 -0.0022 11 8 5.1208 5.1464 -0.0453 12 7 7.2647 4.5830 0.0448 13 6 8.2116 3.5934 -0.0256 14 1 8.2128 2.9055 -0.8581 15 6 9.1689 3.4759 0.9739 16 7 9.0602 4.1856 2.0746 17 14 10.6107 2.3091 0.7534 18 1 11.7358 3.0292 0.1045 19 1 11.0461 1.8040 2.0803 20 1 10.1969 1.1663 -0.0997 21 6 7.6578 5.9191 0.1652 22 6 9.0020 6.2390 0.3120 23 6 9.3868 7.5600 0.4301 24 6 8.4359 8.5640 0.4029 25 6 7.0970 8.2492 0.2570 26 6 6.7051 6.9304 0.1383 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9558 0.7809 -0.8908 31 1 3.9564 0.7807 0.8892 32 1 3.7629 4.4812 1.2480 33 1 2.3650 3.3789 1.2485 34 1 3.8435 2.9422 2.1381 35 1 3.8421 2.9410 -2.1404 36 1 2.3641 3.3783 -1.2499 37 1 3.7613 4.4807 -1.2506 38 1 5.9178 2.3278 -0.8908 39 1 5.9177 2.3285 0.8892 40 1 9.7648 4.1586 2.7406 41 1 9.7446 5.4553 0.3380 42 1 10.4313 7.8093 0.5447 43 1 8.7395 9.5962 0.4959 44 1 6.3572 9.0357 0.2357 45 1 5.6595 6.6852 0.0248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182398619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:15 Heat of formation + Delta-G solvation = -85.906954 kcal Electronic energy + Delta-G solvation = -27821.209507 eV Core-core repulsion = 23997.420008 eV Total energy + Delta-G solvation = -3823.789498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.93372 -41.33144 -39.37526 -38.01573 -36.90893 -36.36291 -33.76034 -31.38576 -31.14850 -30.20352 -28.52307 -28.07981 -27.76840 -26.91698 -23.61387 -23.03824 -22.36920 -21.19207 -20.10458 -19.12315 -18.45273 -17.95048 -17.48732 -17.31699 -17.20606 -16.78724 -16.20858 -16.04837 -15.38799 -15.30688 -15.15655 -14.71561 -14.64897 -14.52342 -14.07628 -13.80906 -13.72170 -13.53074 -13.25645 -13.02185 -12.93706 -12.81200 -12.76484 -12.49658 -12.40779 -12.19795 -12.13235 -12.05462 -11.81770 -11.63428 -11.57027 -11.52269 -10.97125 -10.84379 -10.48987 -9.63778 -9.49392 -8.65421 -8.06922 -6.38277 0.74433 0.84662 1.25662 1.45707 1.49471 1.59461 1.81123 2.08677 2.30411 2.89030 2.99122 3.40417 3.66389 3.95136 3.95914 4.13121 4.32452 4.34172 4.35097 4.36449 4.49125 4.56983 4.61181 4.62329 4.68653 4.74708 4.87556 4.91869 4.99372 5.04848 5.07374 5.12970 5.16310 5.19170 5.31129 5.42907 5.45818 5.60811 5.63251 5.73541 5.83716 5.94941 5.95369 6.14438 6.28975 6.68874 6.85069 7.07325 7.53526 7.91255 8.69955 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.004081 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.117832 B = 6860.160298 C = 8393.081361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.463 3.537 4 O -0.522 6.522 5 C -0.102 4.102 6 C -0.027 4.027 7 C -0.154 4.154 8 C -0.156 4.156 9 C -0.097 4.097 10 C 0.484 3.516 11 O -0.567 6.567 12 N -0.401 5.401 13 C -0.376 4.376 14 H 0.102 0.898 15 C 0.023 3.977 16 N -0.878 5.878 17 Si 0.976 3.024 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.249 1.249 21 C 0.156 3.844 22 C -0.130 4.130 23 C -0.126 4.126 24 C -0.170 4.170 25 C -0.122 4.122 26 C -0.218 4.218 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.272 0.728 41 H 0.116 0.884 42 H 0.130 0.870 43 H 0.138 0.862 44 H 0.132 0.868 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 -7.926 -3.558 11.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.308 3.692 4 O -0.412 6.412 5 C -0.139 4.139 6 C -0.028 4.028 7 C -0.211 4.211 8 C -0.213 4.213 9 C -0.137 4.137 10 C 0.278 3.722 11 O -0.452 6.452 12 N -0.109 5.109 13 C -0.503 4.503 14 H 0.119 0.881 15 C -0.183 4.183 16 N -0.511 5.511 17 Si 0.799 3.201 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.172 1.172 21 C 0.059 3.941 22 C -0.151 4.151 23 C -0.145 4.145 24 C -0.189 4.189 25 C -0.140 4.140 26 C -0.237 4.237 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.148 0.852 43 H 0.156 0.844 44 H 0.150 0.850 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.907 -7.348 -3.364 11.307 hybrid contribution 0.798 -0.111 0.404 0.901 sum -7.110 -7.459 -2.960 10.721 Atomic orbital electron populations 1.23496 0.75196 1.05472 1.02312 1.86512 1.24717 1.33024 1.83961 1.24033 0.92687 0.81031 0.71419 1.90580 1.67940 1.36743 1.45920 1.21542 0.86677 0.97840 1.07878 1.20010 0.92723 0.93152 0.96901 1.22157 1.01589 1.01443 0.95860 1.22210 1.01530 1.01985 0.95539 1.21378 0.94854 0.92467 1.04976 1.21511 0.81555 0.92589 0.76578 1.90075 1.52031 1.49917 1.53226 1.41313 1.05521 1.03698 1.60398 1.19632 1.11297 1.11269 1.08111 0.88086 1.26316 1.01524 0.97628 0.92874 1.70154 1.33237 1.40388 1.07350 0.85186 0.78011 0.79094 0.77847 1.19940 1.21033 1.17207 1.18666 0.93677 0.85183 0.96621 1.21065 0.95132 0.96646 1.02254 1.21131 0.99867 0.92272 1.01199 1.21180 0.93000 0.99443 1.05241 1.21235 0.96535 0.95771 1.00479 1.22884 1.02828 0.92679 1.05357 0.92324 0.92118 0.85156 0.85073 0.85805 0.92881 0.91461 0.93938 0.92947 0.91722 0.92125 0.87810 0.89016 0.91820 0.86594 0.85241 0.84373 0.85028 0.81871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.37 -7.88 10.57 -51.45 -0.54 -8.42 16 3 C 0.46 11.83 7.37 71.24 0.53 12.36 16 4 O -0.52 -16.34 11.10 21.96 0.24 -16.09 16 5 C -0.10 -2.38 4.88 29.85 0.15 -2.23 16 6 C -0.03 -0.86 0.51 -52.18 -0.03 -0.89 16 7 C -0.15 -5.50 7.88 71.98 0.57 -4.93 16 8 C -0.16 -5.21 7.88 71.98 0.57 -4.64 16 9 C -0.10 -3.46 3.58 29.85 0.11 -3.35 16 10 C 0.48 22.02 6.98 87.66 0.61 22.63 16 11 O -0.57 -27.02 7.74 -3.03 -0.02 -27.04 16 12 N -0.40 -19.91 2.62 -458.90 -1.20 -21.12 16 13 C -0.38 -17.90 7.64 84.02 0.64 -17.26 16 14 H 0.10 4.47 7.76 -2.91 -0.02 4.45 16 15 C 0.02 1.07 3.48 84.91 0.30 1.37 16 16 N -0.88 -45.38 11.40 21.65 0.25 -45.13 16 17 Si 0.98 36.76 29.57 68.60 2.03 38.78 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 19 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 21 C 0.16 7.91 6.05 38.22 0.23 8.14 16 22 C -0.13 -6.30 7.87 22.41 0.18 -6.12 16 23 C -0.13 -5.21 10.04 22.25 0.22 -4.99 16 24 C -0.17 -6.46 10.04 22.30 0.22 -6.24 16 25 C -0.12 -4.99 10.04 22.25 0.22 -4.76 16 26 C -0.22 -10.48 9.06 22.41 0.20 -10.28 16 27 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 28 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 29 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.12 2.45 8.14 -2.39 -0.02 2.44 16 32 H 0.05 2.25 5.60 -2.39 -0.01 2.24 16 33 H 0.07 2.39 5.52 -2.39 -0.01 2.38 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 2.19 5.52 -2.39 -0.01 2.18 16 37 H 0.06 2.42 5.43 -2.39 -0.01 2.40 16 38 H 0.10 3.27 8.01 -2.39 -0.02 3.25 16 39 H 0.09 3.30 8.11 -2.39 -0.02 3.28 16 40 H 0.27 13.41 8.32 -92.71 -0.77 12.64 16 41 H 0.12 5.85 5.15 -2.91 -0.02 5.84 16 42 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 43 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 44 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 45 H 0.17 8.21 4.50 -64.52 -0.29 7.92 16 Total: -1.00 -63.09 353.24 7.39 -55.71 By element: Atomic # 1 Polarization: 42.14 SS G_CDS: 0.72 Total: 42.86 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 5.91 Total: -19.55 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -0.96 Total: -66.24 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.32 Total: -51.56 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.78 kcal Total: -63.09 7.39 -55.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182398619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.199 kcal (2) G-P(sol) polarization free energy of solvation -63.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds