Wall clock time and date at job start Tue Mar 31 2020 12:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47376 * 2 1 4 4 C 1.53002 * 109.46764 * 119.99995 * 2 1 3 5 5 C 1.53003 * 109.46754 * 174.99984 * 4 2 1 6 6 H 1.08997 * 109.47894 * 54.97602 * 5 4 2 7 7 O 1.42905 * 109.48993 * 294.94303 * 5 4 2 8 8 C 1.42902 * 114.09583 * 178.85260 * 7 5 4 9 9 C 1.53090 * 109.41282 * 61.16326 * 8 7 5 10 10 C 1.53176 * 109.16668 * 302.38812 * 9 8 7 11 11 C 1.53096 * 109.47781 * 174.99784 * 5 4 2 12 12 H 1.09004 * 109.51858 * 57.69704 * 11 5 4 13 13 N 1.46498 * 109.52522 * 297.50863 * 11 5 4 14 14 S 1.65593 * 120.00273 * 145.00134 * 13 11 5 15 15 O 1.42100 * 104.27863 * 181.07165 * 14 13 11 16 16 O 1.42101 * 104.27626 * 308.92990 * 14 13 11 17 17 C 1.81400 * 104.45011 * 64.99679 * 14 13 11 18 18 C 1.53000 * 109.46981 * 179.97438 * 17 14 13 19 19 C 1.50704 * 109.46970 * 180.02562 * 18 17 14 20 20 H 1.07997 * 119.99940 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00005 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99820 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00000 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47141 * 90.00575 * 23 21 19 25 25 H 1.48505 * 109.47242 * 210.00439 * 23 21 19 26 26 H 1.48507 * 109.47331 * 330.00438 * 23 21 19 27 27 H 1.09005 * 109.46790 * 300.00150 * 1 2 3 28 28 H 1.09002 * 109.47005 * 59.99922 * 1 2 3 29 29 H 1.08996 * 109.47099 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47060 * 239.99424 * 2 1 3 31 31 H 1.08994 * 109.47228 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47117 * 300.00010 * 3 2 1 33 33 H 1.09001 * 109.47496 * 59.99691 * 3 2 1 34 34 H 1.08997 * 109.47696 * 55.00132 * 4 2 1 35 35 H 1.09006 * 109.47149 * 294.99728 * 4 2 1 36 36 H 1.09003 * 109.47624 * 181.14087 * 8 7 5 37 37 H 1.09000 * 109.48246 * 301.17851 * 8 7 5 38 38 H 1.09005 * 109.52564 * 62.29704 * 9 8 7 39 39 H 1.08998 * 109.52249 * 182.41867 * 9 8 7 40 40 H 1.09005 * 109.54225 * 297.11519 * 10 9 8 41 41 H 1.08991 * 109.54673 * 176.84737 * 10 9 8 42 42 H 0.97008 * 119.99742 * 325.00382 * 13 11 5 43 43 H 1.08994 * 109.47476 * 300.00469 * 17 14 13 44 44 H 1.09006 * 109.46794 * 60.00353 * 17 14 13 45 45 H 1.09004 * 109.47708 * 300.00099 * 18 17 14 46 46 H 1.09006 * 109.47010 * 60.00557 * 18 17 14 47 47 H 0.97004 * 119.99730 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 1 3.9955 0.1610 1.0523 7 8 3.9389 -1.6672 0.0912 8 6 5.3505 -1.8169 -0.0734 9 6 5.9431 -2.4652 1.1805 10 6 5.6060 -1.6019 2.4001 11 6 4.0856 -1.4398 2.4926 12 1 3.6242 -2.4148 2.6493 13 7 3.7549 -0.5547 3.6122 14 16 3.3715 -1.1964 5.0898 15 8 3.0907 -0.0642 5.9014 16 8 2.3671 -2.1599 4.8035 17 6 4.8966 -2.0108 5.6390 18 6 4.6681 -2.6496 7.0104 19 6 5.9353 -3.3257 7.4670 20 1 6.8153 -3.3024 6.8414 21 6 5.9707 -3.9748 8.6829 22 7 7.0764 -4.5652 9.0810 23 14 4.4484 -4.0156 9.7646 24 1 3.6355 -5.2125 9.4301 25 1 4.8563 -4.0772 11.1912 26 1 3.6431 -2.7896 9.5325 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6054 -1.7198 1.2953 35 1 1.7516 -0.1583 2.1370 36 1 5.5506 -2.4490 -0.9386 37 1 5.8046 -0.8377 -0.2256 38 1 5.5193 -3.4610 1.3107 39 1 7.0253 -2.5410 1.0746 40 1 6.0713 -0.6220 2.2930 41 1 5.9767 -2.0862 3.3034 42 1 3.7604 0.4074 3.4879 43 1 5.1759 -2.7815 4.9207 44 1 5.6965 -1.2738 5.7106 45 1 4.3891 -1.8785 7.7286 46 1 3.8681 -3.3865 6.9392 47 1 7.1014 -5.0216 9.9367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186019278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:02 Heat of formation + Delta-G solvation = -151.007854 kcal Electronic energy + Delta-G solvation = -26499.369302 eV Core-core repulsion = 22808.200768 eV Total energy + Delta-G solvation = -3691.168534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.06925 -36.75670 -36.40205 -35.67920 -35.48787 -33.99785 -32.75946 -31.51015 -30.11098 -27.38715 -27.18632 -26.00794 -24.22630 -22.59857 -21.31042 -20.69871 -20.04015 -19.10802 -17.76897 -17.19052 -16.73130 -16.30438 -15.76233 -15.55931 -15.13703 -14.86798 -14.74847 -14.44261 -14.29923 -13.69762 -13.68044 -13.54895 -13.22423 -12.84904 -12.53659 -12.40447 -12.16474 -11.95754 -11.86032 -11.80885 -11.75746 -11.66523 -11.54146 -11.41207 -11.26022 -11.19358 -11.02194 -10.83306 -10.79174 -10.48297 -10.40984 -10.17234 -9.89014 -9.67762 -9.42975 -9.14206 -8.68347 -6.18797 -4.20158 0.62375 2.90990 3.25167 3.32603 3.36679 3.60059 4.07530 4.28054 4.34046 4.46219 4.63691 4.67456 4.71599 4.76955 4.84145 4.87677 4.95430 5.12850 5.14016 5.20643 5.34582 5.38075 5.44125 5.45990 5.54279 5.56452 5.58749 5.61613 5.66088 5.71786 5.78929 5.81162 5.87605 5.94788 6.06386 6.10073 6.18639 6.27530 6.28563 6.78612 6.88677 6.95066 7.05823 7.52335 8.33992 8.81973 9.40949 10.93558 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018680 B = 0.003653 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.586874 B = 7662.358392 C = 8630.661654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.150 4.150 4 C -0.110 4.110 5 C 0.092 3.908 6 H 0.066 0.934 7 O -0.371 6.371 8 C 0.059 3.941 9 C -0.155 4.155 10 C -0.151 4.151 11 C 0.119 3.881 12 H 0.102 0.898 13 N -1.116 6.116 14 S 2.588 3.412 15 O -0.966 6.966 16 O -0.963 6.963 17 C -0.584 4.584 18 C -0.007 4.007 19 C -0.519 4.519 20 H 0.078 0.922 21 C 0.072 3.928 22 N -0.895 5.895 23 Si 0.869 3.131 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.413 0.587 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.032 0.968 46 H 0.028 0.972 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 9.633 -20.774 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.207 4.207 4 C -0.148 4.148 5 C 0.033 3.967 6 H 0.084 0.916 7 O -0.289 6.289 8 C -0.018 4.018 9 C -0.194 4.194 10 C -0.190 4.190 11 C 0.011 3.989 12 H 0.120 0.880 13 N -0.873 5.873 14 S 2.686 3.314 15 O -0.956 6.956 16 O -0.953 6.953 17 C -0.717 4.717 18 C -0.046 4.046 19 C -0.558 4.558 20 H 0.096 0.904 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.695 3.305 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.186 1.186 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.246 0.754 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.051 0.949 46 H 0.046 0.954 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.902 9.329 -20.329 23.408 hybrid contribution 0.413 0.220 0.704 0.845 sum -6.489 9.549 -19.625 22.770 Atomic orbital electron populations 1.21847 0.95316 1.01851 1.01541 1.21078 0.95539 0.95976 0.98774 1.21916 1.00935 0.96226 1.01644 1.21725 0.92389 1.02190 0.98459 1.22325 0.96104 0.93260 0.85013 0.91583 1.87972 1.22424 1.69718 1.48822 1.22616 0.81473 0.99942 0.97787 1.22199 1.01905 1.00442 0.94822 1.22330 0.95642 1.01298 0.99767 1.21464 0.95246 0.94876 0.87296 0.87965 1.55743 1.88164 1.16748 1.26667 1.05658 0.78058 0.74975 0.72753 1.93564 1.84582 1.50121 1.67377 1.93559 1.55128 1.63484 1.83098 1.30401 1.18861 1.12485 1.09966 1.19412 1.00040 0.96486 0.88675 1.20835 0.96455 1.34115 1.04433 0.90426 1.24983 0.96111 0.94506 0.97492 1.69881 1.26714 1.35155 1.21582 0.86928 0.83708 0.79629 0.80211 1.19638 1.20737 1.18622 0.92731 0.92889 0.92571 0.90416 0.92726 0.92892 0.92690 0.90519 0.90109 0.88715 0.93228 0.90446 0.90270 0.90865 0.89908 0.75379 0.85670 0.85441 0.94944 0.95366 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 2 C -0.10 -0.85 2.87 -90.62 -0.26 -1.11 16 3 C -0.15 -1.18 8.95 37.15 0.33 -0.85 16 4 C -0.11 -1.15 4.32 -26.73 -0.12 -1.26 16 5 C 0.09 0.92 2.13 -26.68 -0.06 0.86 16 6 H 0.07 0.58 6.34 -51.93 -0.33 0.25 16 7 O -0.37 -3.86 9.86 -35.23 -0.35 -4.20 16 8 C 0.06 0.48 6.84 37.20 0.25 0.73 16 9 C -0.16 -1.36 6.14 -26.59 -0.16 -1.52 16 10 C -0.15 -1.50 5.59 -26.55 -0.15 -1.65 16 11 C 0.12 1.33 2.31 -67.79 -0.16 1.17 16 12 H 0.10 1.28 7.49 -51.93 -0.39 0.89 16 13 N -1.12 -13.14 4.63 -4.77 -0.02 -13.16 16 14 S 2.59 42.64 5.44 -107.50 -0.58 42.06 16 15 O -0.97 -18.54 18.08 -57.54 -1.04 -19.58 16 16 O -0.96 -18.41 17.40 -57.54 -1.00 -19.41 16 17 C -0.58 -10.39 5.26 37.16 0.20 -10.20 16 18 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 19 C -0.52 -14.32 9.66 -34.44 -0.33 -14.65 16 20 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 21 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 22 N -0.90 -26.88 13.96 55.43 0.77 -26.10 16 23 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.74 7.70 -51.93 -0.40 0.34 16 31 H 0.05 0.41 6.46 -51.93 -0.34 0.08 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.86 7.54 -51.93 -0.39 0.47 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.90 5.90 -51.93 -0.31 0.59 16 42 H 0.41 3.92 8.80 -34.47 -0.30 3.62 16 43 H 0.13 2.01 6.75 -51.93 -0.35 1.66 16 44 H 0.13 2.05 8.14 -51.92 -0.42 1.63 16 45 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 46 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -33.86 376.12 -9.77 -43.64 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.23 Total: 2.09 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: -0.32 Total: -27.70 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.75 Total: -39.26 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -2.39 Total: -43.20 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 42.64 SS G_CDS: -0.58 Total: 42.06 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.86 -9.77 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186019278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.372 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds