Wall clock time and date at job start Tue Mar 31 2020 12:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 H 1.09001 * 109.48223 * 55.00206 * 5 4 2 7 7 O 1.42902 * 109.48331 * 294.97915 * 5 4 2 8 8 C 1.42903 * 114.09830 * 178.87240 * 7 5 4 9 9 C 1.53088 * 109.42738 * 61.13742 * 8 7 5 10 10 C 1.53172 * 109.16300 * 302.39773 * 9 8 7 11 11 C 1.53091 * 109.48314 * 175.02193 * 5 4 2 12 12 H 1.09003 * 109.52523 * 297.56562 * 11 5 4 13 13 N 1.46498 * 109.52180 * 57.68634 * 11 5 4 14 14 S 1.65602 * 120.00174 * 215.00046 * 13 11 5 15 15 O 1.42100 * 104.27394 * 181.07531 * 14 13 11 16 16 O 1.42099 * 104.27472 * 308.92947 * 14 13 11 17 17 C 1.81398 * 104.44914 * 65.00221 * 14 13 11 18 18 C 1.53004 * 109.46988 * 180.02562 * 17 14 13 19 19 C 1.50692 * 109.46913 * 179.97438 * 18 17 14 20 20 H 1.08005 * 120.00532 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00245 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99371 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00337 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47100 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46664 * 120.00375 * 23 21 19 26 26 H 1.48497 * 109.47437 * 240.00362 * 23 21 19 27 27 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 28 28 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 30 30 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 35 35 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 36 36 H 1.09004 * 109.46703 * 301.15228 * 8 7 5 37 37 H 1.08997 * 109.48634 * 181.13763 * 8 7 5 38 38 H 1.09003 * 109.51896 * 182.49001 * 9 8 7 39 39 H 1.09001 * 109.57343 * 62.33424 * 9 8 7 40 40 H 1.09006 * 109.54509 * 297.11371 * 10 9 8 41 41 H 1.08997 * 109.54307 * 176.85040 * 10 9 8 42 42 H 0.97003 * 119.99931 * 35.00285 * 13 11 5 43 43 H 1.09004 * 109.46870 * 299.99975 * 17 14 13 44 44 H 1.08995 * 109.47251 * 60.00123 * 17 14 13 45 45 H 1.08998 * 109.46472 * 299.99832 * 18 17 14 46 46 H 1.08995 * 109.47218 * 59.99865 * 18 17 14 47 47 H 0.97007 * 119.99515 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 0.5563 -2.2708 -1.0528 7 8 2.2983 -2.8265 -0.0908 8 6 1.9693 -4.2074 0.0736 9 6 2.3834 -4.9823 -1.1800 10 6 1.6821 -4.3769 -2.3998 11 6 2.0359 -2.8894 -2.4925 12 1 1.4981 -2.4373 -3.3258 13 7 3.4781 -2.7414 -2.7028 14 16 4.0776 -2.5657 -4.2364 15 8 5.4842 -2.4779 -4.0549 16 8 3.4985 -3.6400 -4.9642 17 6 3.4087 -0.9781 -4.8047 18 6 3.8964 -0.6993 -6.2278 19 6 3.3403 0.6192 -6.7001 20 1 2.7030 1.2005 -6.0501 21 6 3.6457 1.0842 -7.9617 22 7 4.4221 0.3767 -8.7530 23 14 2.9558 2.7183 -8.5473 24 1 2.1166 3.3136 -7.4765 25 1 4.0740 3.6406 -8.8697 26 1 2.1286 2.4999 -9.7611 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6053 -0.2617 -2.1370 35 1 3.1263 -0.6443 -1.2952 36 1 0.8947 -4.3092 0.2255 37 1 2.4981 -4.6067 0.9391 38 1 2.0932 -6.0277 -1.0745 39 1 3.4635 -4.9155 -1.3105 40 1 0.6031 -4.4891 -2.2931 41 1 2.0155 -4.8880 -3.3030 42 1 4.0820 -2.7464 -1.9436 43 1 2.3195 -1.0187 -4.7956 44 1 3.7482 -0.1825 -4.1415 45 1 4.9856 -0.6589 -6.2371 46 1 3.5566 -1.4949 -6.8908 47 1 4.6367 0.7036 -9.6407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186019311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:09 Heat of formation + Delta-G solvation = -155.119470 kcal Electronic energy + Delta-G solvation = -26768.498697 eV Core-core repulsion = 23077.151870 eV Total energy + Delta-G solvation = -3691.346827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.10188 -36.58387 -36.32763 -35.45086 -35.12212 -33.89991 -32.56210 -31.16904 -30.17933 -27.28671 -27.17346 -25.61144 -24.32806 -22.65830 -21.67695 -20.34474 -19.98260 -18.78491 -17.60603 -16.90712 -16.48411 -15.95473 -15.80972 -15.41349 -15.08211 -14.90083 -14.61288 -14.53536 -14.39441 -13.78062 -13.42275 -13.29223 -12.86515 -12.64935 -12.52954 -12.33172 -12.25792 -11.95164 -11.78034 -11.59495 -11.56421 -11.49932 -11.36792 -11.27717 -11.10327 -10.96312 -10.84327 -10.76127 -10.69234 -10.45522 -10.38728 -10.28942 -9.90253 -9.65877 -9.28507 -8.96765 -8.51283 -6.13159 -4.18561 0.81521 3.13777 3.24566 3.31985 3.35057 3.63008 4.24413 4.34628 4.37731 4.60922 4.69860 4.73438 4.81566 4.86128 4.91438 4.94048 5.09129 5.13113 5.20142 5.22386 5.39864 5.40762 5.53749 5.59766 5.64094 5.64460 5.66271 5.69150 5.74795 5.82828 5.85253 5.90892 5.95410 6.10752 6.16827 6.19123 6.24595 6.34088 6.48481 7.05846 7.20364 7.29830 7.36082 7.80009 8.16935 8.85074 9.46305 10.97959 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.004355 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.272918 B = 6427.922734 C = 7987.645739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.113 4.113 5 C 0.086 3.914 6 H 0.071 0.929 7 O -0.371 6.371 8 C 0.061 3.939 9 C -0.154 4.154 10 C -0.142 4.142 11 C 0.126 3.874 12 H 0.093 0.907 13 N -1.114 6.114 14 S 2.590 3.410 15 O -0.968 6.968 16 O -0.967 6.967 17 C -0.591 4.591 18 C 0.028 3.972 19 C -0.519 4.519 20 H 0.062 0.938 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.416 0.584 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 -5.730 19.705 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.151 4.151 5 C 0.027 3.973 6 H 0.089 0.911 7 O -0.290 6.290 8 C -0.016 4.016 9 C -0.192 4.192 10 C -0.181 4.181 11 C 0.018 3.982 12 H 0.111 0.889 13 N -0.871 5.871 14 S 2.688 3.312 15 O -0.958 6.958 16 O -0.956 6.956 17 C -0.724 4.724 18 C -0.011 4.011 19 C -0.558 4.558 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.250 0.750 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.927 -6.293 19.078 21.597 hybrid contribution -0.664 1.203 -0.175 1.385 sum -8.591 -5.089 18.903 21.379 Atomic orbital electron populations 1.21918 0.95647 1.01459 1.01699 1.21055 0.95442 0.96038 0.98661 1.21855 1.01221 0.95937 1.01662 1.21753 1.02836 0.91757 0.98734 1.22466 0.96371 0.92956 0.85470 0.91080 1.87933 1.69063 1.22850 1.49183 1.22576 0.99525 0.81867 0.97658 1.22128 1.02122 0.99699 0.95225 1.22128 1.00347 0.95697 0.99932 1.21351 0.81549 0.96271 0.99073 0.88908 1.55747 1.13824 1.90713 1.26808 1.05617 0.74457 0.78252 0.72901 1.93553 1.29667 1.88197 1.84421 1.93536 1.79181 1.51470 1.71459 1.30470 1.11655 1.18941 1.11334 1.18952 0.97498 0.99334 0.85273 1.21032 1.30947 1.04027 0.99809 0.91998 1.25066 0.95033 0.97691 0.96684 1.69968 1.35951 1.38089 1.08829 0.86430 0.78871 0.83324 0.78759 1.19643 1.20802 1.20815 0.92592 0.92788 0.92969 0.90509 0.92976 0.92543 0.92517 0.89990 0.90344 0.93404 0.89082 0.91027 0.90736 0.91111 0.89389 0.74989 0.86494 0.86028 0.94896 0.94894 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.95 37.16 0.33 -0.89 16 2 C -0.09 -0.85 2.87 -90.62 -0.26 -1.11 16 3 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 4 C -0.11 -1.13 4.13 -26.74 -0.11 -1.24 16 5 C 0.09 0.83 2.24 -26.69 -0.06 0.77 16 6 H 0.07 0.60 6.35 -51.93 -0.33 0.27 16 7 O -0.37 -3.76 9.46 -35.23 -0.33 -4.09 16 8 C 0.06 0.50 6.84 37.20 0.25 0.76 16 9 C -0.15 -1.43 5.97 -26.60 -0.16 -1.59 16 10 C -0.14 -1.50 5.72 -26.55 -0.15 -1.65 16 11 C 0.13 1.40 2.40 -67.79 -0.16 1.24 16 12 H 0.09 0.99 7.16 -51.93 -0.37 0.62 16 13 N -1.11 -14.42 4.02 -4.77 -0.02 -14.44 16 14 S 2.59 45.73 5.38 -107.50 -0.58 45.15 16 15 O -0.97 -20.24 18.08 -57.54 -1.04 -21.28 16 16 O -0.97 -19.56 17.12 -57.54 -0.98 -20.55 16 17 C -0.59 -10.99 5.90 37.16 0.22 -10.77 16 18 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 19 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 20 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 23 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.42 6.46 -51.93 -0.34 0.08 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.75 7.70 -51.93 -0.40 0.35 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.83 7.71 -51.92 -0.40 0.43 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.78 7.65 -51.93 -0.40 0.38 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.12 7.43 -51.93 -0.39 0.74 16 42 H 0.42 4.97 8.31 -34.47 -0.29 4.68 16 43 H 0.12 1.90 7.45 -51.92 -0.39 1.52 16 44 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 45 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -33.98 380.08 -10.15 -44.13 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.33 Total: 2.84 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: -0.31 Total: -27.87 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.72 Total: -40.07 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -2.36 Total: -45.92 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 45.73 SS G_CDS: -0.58 Total: 45.15 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.98 -10.15 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186019311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.994 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds