Wall clock time and date at job start Tue Mar 31 2020 12:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 H 1.09001 * 109.48223 * 55.00206 * 5 4 2 7 7 O 1.42902 * 109.48331 * 294.97915 * 5 4 2 8 8 C 1.42903 * 114.09830 * 178.87240 * 7 5 4 9 9 C 1.53088 * 109.42738 * 61.13742 * 8 7 5 10 10 C 1.53172 * 109.16300 * 302.39773 * 9 8 7 11 11 C 1.53091 * 109.48314 * 175.02193 * 5 4 2 12 12 H 1.09003 * 109.52523 * 297.56562 * 11 5 4 13 13 N 1.46498 * 109.52180 * 57.68634 * 11 5 4 14 14 S 1.65602 * 120.00174 * 215.00046 * 13 11 5 15 15 O 1.42100 * 104.27394 * 181.07531 * 14 13 11 16 16 O 1.42099 * 104.27472 * 308.92947 * 14 13 11 17 17 C 1.81398 * 104.44914 * 65.00221 * 14 13 11 18 18 C 1.53004 * 109.46988 * 180.02562 * 17 14 13 19 19 C 1.50692 * 109.46913 * 179.97438 * 18 17 14 20 20 H 1.08005 * 120.00532 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00245 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99371 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00337 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47100 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46664 * 120.00375 * 23 21 19 26 26 H 1.48497 * 109.47437 * 240.00362 * 23 21 19 27 27 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 28 28 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 30 30 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 35 35 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 36 36 H 1.09004 * 109.46703 * 301.15228 * 8 7 5 37 37 H 1.08997 * 109.48634 * 181.13763 * 8 7 5 38 38 H 1.09003 * 109.51896 * 182.49001 * 9 8 7 39 39 H 1.09001 * 109.57343 * 62.33424 * 9 8 7 40 40 H 1.09006 * 109.54509 * 297.11371 * 10 9 8 41 41 H 1.08997 * 109.54307 * 176.85040 * 10 9 8 42 42 H 0.97003 * 119.99931 * 35.00285 * 13 11 5 43 43 H 1.09004 * 109.46870 * 299.99975 * 17 14 13 44 44 H 1.08995 * 109.47251 * 60.00123 * 17 14 13 45 45 H 1.08998 * 109.46472 * 299.99832 * 18 17 14 46 46 H 1.08995 * 109.47218 * 59.99865 * 18 17 14 47 47 H 0.97007 * 119.99515 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 0.5563 -2.2708 -1.0528 7 8 2.2983 -2.8265 -0.0908 8 6 1.9693 -4.2074 0.0736 9 6 2.3834 -4.9823 -1.1800 10 6 1.6821 -4.3769 -2.3998 11 6 2.0359 -2.8894 -2.4925 12 1 1.4981 -2.4373 -3.3258 13 7 3.4781 -2.7414 -2.7028 14 16 4.0776 -2.5657 -4.2364 15 8 5.4842 -2.4779 -4.0549 16 8 3.4985 -3.6400 -4.9642 17 6 3.4087 -0.9781 -4.8047 18 6 3.8964 -0.6993 -6.2278 19 6 3.3403 0.6192 -6.7001 20 1 2.7030 1.2005 -6.0501 21 6 3.6457 1.0842 -7.9617 22 7 4.4221 0.3767 -8.7530 23 14 2.9558 2.7183 -8.5473 24 1 2.1166 3.3136 -7.4765 25 1 4.0740 3.6406 -8.8697 26 1 2.1286 2.4999 -9.7611 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6053 -0.2617 -2.1370 35 1 3.1263 -0.6443 -1.2952 36 1 0.8947 -4.3092 0.2255 37 1 2.4981 -4.6067 0.9391 38 1 2.0932 -6.0277 -1.0745 39 1 3.4635 -4.9155 -1.3105 40 1 0.6031 -4.4891 -2.2931 41 1 2.0155 -4.8880 -3.3030 42 1 4.0820 -2.7464 -1.9436 43 1 2.3195 -1.0187 -4.7956 44 1 3.7482 -0.1825 -4.1415 45 1 4.9856 -0.6589 -6.2371 46 1 3.5566 -1.4949 -6.8908 47 1 4.6367 0.7036 -9.6407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186019311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:08 Heat of formation + Delta-G solvation = -178.877890 kcal Electronic energy + Delta-G solvation = -26769.528940 eV Core-core repulsion = 23077.151870 eV Total energy + Delta-G solvation = -3692.377069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.88875 -38.14223 -37.06622 -36.97563 -36.09257 -35.88645 -33.36270 -33.10710 -31.08051 -27.96812 -27.91148 -27.57870 -25.09566 -23.66017 -23.33698 -21.28328 -20.69709 -20.07800 -19.12961 -18.42706 -17.65858 -17.06365 -16.82022 -16.74845 -16.49834 -16.22816 -15.76105 -15.45873 -15.22358 -15.03827 -14.53358 -14.47090 -14.05208 -13.80753 -13.72594 -13.48343 -13.19777 -13.09483 -13.01378 -13.00553 -12.94034 -12.78195 -12.65876 -12.57976 -12.26392 -12.21795 -12.11573 -12.09359 -11.73526 -11.56242 -11.46504 -11.39993 -11.22960 -10.99003 -10.64871 -10.56024 -10.03676 -8.25174 -6.38789 -0.66256 1.41727 1.42135 1.55339 1.85358 2.38686 2.81496 2.91972 3.08798 3.28382 3.53795 3.82821 3.94561 3.98409 4.06736 4.13483 4.15957 4.18837 4.22499 4.32744 4.40442 4.52767 4.67505 4.73019 4.75944 4.86097 4.91358 4.91657 4.94006 4.98702 5.10500 5.14022 5.18374 5.21984 5.27671 5.29133 5.32369 5.40659 5.42284 5.55186 5.64105 5.69717 6.06992 6.13507 6.39013 6.75294 7.31521 8.87445 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.004355 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.272918 B = 6427.922734 C = 7987.645739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.150 4.150 4 C -0.119 4.119 5 C 0.095 3.905 6 H 0.092 0.908 7 O -0.384 6.384 8 C 0.060 3.940 9 C -0.154 4.154 10 C -0.144 4.144 11 C 0.113 3.887 12 H 0.100 0.900 13 N -1.094 6.094 14 S 2.615 3.385 15 O -1.004 7.004 16 O -0.994 6.994 17 C -0.587 4.587 18 C 0.021 3.979 19 C -0.534 4.534 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.935 5.935 23 Si 0.972 3.028 24 H -0.254 1.254 25 H -0.280 1.280 26 H -0.279 1.279 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.423 0.577 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.003 0.997 46 H 0.006 0.994 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.835 -4.923 21.654 24.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.157 4.157 5 C 0.035 3.965 6 H 0.110 0.890 7 O -0.303 6.303 8 C -0.017 4.017 9 C -0.192 4.192 10 C -0.184 4.184 11 C 0.006 3.994 12 H 0.117 0.883 13 N -0.856 5.856 14 S 2.712 3.288 15 O -0.994 6.994 16 O -0.983 6.983 17 C -0.719 4.719 18 C -0.018 4.018 19 C -0.573 4.573 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.575 5.575 23 Si 0.796 3.204 24 H -0.177 1.177 25 H -0.206 1.206 26 H -0.204 1.204 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.260 0.740 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.021 0.979 46 H 0.025 0.975 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.180 -5.485 21.045 24.012 hybrid contribution 0.030 0.879 -0.714 1.133 sum -10.150 -4.606 20.330 23.186 Atomic orbital electron populations 1.21902 0.94680 1.02009 1.01944 1.20999 0.96189 0.95621 0.97939 1.21865 1.00820 0.96213 1.01872 1.21813 1.02279 0.92270 0.99334 1.22430 0.97342 0.92353 0.84327 0.89005 1.87930 1.69473 1.23812 1.49053 1.22707 1.00852 0.80748 0.97354 1.22139 1.00922 1.00827 0.95274 1.22146 1.02005 0.94834 0.99374 1.21723 0.79841 0.97322 1.00522 0.88256 1.55258 1.15212 1.90150 1.24940 1.04601 0.73316 0.77347 0.73539 1.93497 1.32181 1.88426 1.85298 1.93501 1.79440 1.52346 1.73048 1.30341 1.13413 1.20512 1.07612 1.18806 0.95769 0.98258 0.88923 1.21539 1.30787 1.04763 1.00249 0.90412 1.26104 0.95302 1.01774 0.97019 1.70116 1.37678 1.40349 1.09383 0.85285 0.78250 0.78311 0.78544 1.17736 1.20577 1.20424 0.92673 0.92063 0.92443 0.90995 0.92162 0.93221 0.92910 0.89759 0.91415 0.91570 0.87853 0.89539 0.92473 0.88641 0.92023 0.74033 0.83778 0.83926 0.97866 0.97532 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.95 71.98 0.64 -1.36 16 2 C -0.09 -1.43 2.87 -10.79 -0.03 -1.46 16 3 C -0.15 -2.51 9.19 71.98 0.66 -1.85 16 4 C -0.12 -2.12 4.13 30.59 0.13 -1.99 16 5 C 0.09 1.57 2.24 30.62 0.07 1.64 16 6 H 0.09 1.20 6.35 -2.39 -0.02 1.19 16 7 O -0.38 -6.77 9.46 -148.98 -1.41 -8.18 16 8 C 0.06 0.82 6.84 72.01 0.49 1.31 16 9 C -0.15 -2.55 5.97 30.68 0.18 -2.37 16 10 C -0.14 -2.79 5.72 30.71 0.18 -2.62 16 11 C 0.11 2.31 2.40 45.08 0.11 2.42 16 12 H 0.10 1.90 7.16 -2.39 -0.02 1.88 16 13 N -1.09 -27.42 4.02 -169.01 -0.68 -28.10 16 14 S 2.62 93.26 5.38 -56.49 -0.30 92.96 16 15 O -1.00 -42.99 18.08 -127.65 -2.31 -45.30 16 16 O -0.99 -40.98 17.12 -127.65 -2.18 -43.16 16 17 C -0.59 -21.60 5.90 71.98 0.42 -21.17 16 18 C 0.02 1.11 4.98 29.85 0.15 1.25 16 19 C -0.53 -29.18 9.11 25.60 0.23 -28.94 16 20 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 21 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 22 N -0.94 -56.84 13.29 21.45 0.28 -56.56 16 23 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 24 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.74 6.46 -2.39 -0.02 0.72 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 1.24 7.70 -2.39 -0.02 1.22 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.34 7.71 -2.38 -0.02 1.32 16 36 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.14 7.65 -2.39 -0.02 1.12 16 40 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.06 1.54 7.43 -2.39 -0.02 1.52 16 42 H 0.42 9.76 8.31 -96.74 -0.80 8.96 16 43 H 0.14 4.46 7.45 -2.39 -0.02 4.44 16 44 H 0.14 4.62 8.14 -2.39 -0.02 4.60 16 45 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -74.51 380.08 -0.74 -75.25 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.13 Total: 23.05 kcal Atomic # 6 Polarization: -58.59 SS G_CDS: 3.70 Total: -54.89 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -0.39 Total: -84.66 kcal Atomic # 8 Polarization: -90.74 SS G_CDS: -5.90 Total: -96.64 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 93.26 SS G_CDS: -0.30 Total: 92.96 kcal Total: -74.51 -0.74 -75.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186019311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.626 kcal (2) G-P(sol) polarization free energy of solvation -74.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds