Wall clock time and date at job start Tue Mar 31 2020 12:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.31001 * 120.00075 * 2 1 4 4 C 1.50698 * 120.00075 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47092 * 124.99688 * 4 3 2 6 6 H 1.08999 * 109.47460 * 305.00202 * 5 4 3 7 7 C 1.53003 * 109.47128 * 184.99578 * 5 4 3 8 8 O 1.42896 * 109.47219 * 305.00080 * 7 5 4 9 9 N 1.46500 * 109.47070 * 64.99753 * 5 4 3 10 10 C 1.34779 * 120.00266 * 204.99667 * 9 5 4 11 11 O 1.21286 * 119.99751 * 0.02562 * 10 9 5 12 12 C 1.50697 * 120.00229 * 180.02562 * 10 9 5 13 13 C 1.50707 * 109.47056 * 180.02562 * 12 10 9 14 14 C 1.38326 * 119.96306 * 269.72045 * 13 12 10 15 15 C 1.38279 * 120.13380 * 179.76669 * 14 13 12 16 16 C 1.38122 * 120.06965 * 0.51339 * 15 14 13 17 17 C 1.38858 * 119.93033 * 359.74227 * 16 15 14 18 18 O 1.35750 * 120.06807 * 179.97438 * 17 16 15 19 19 C 1.34832 * 117.00211 * 354.49233 * 18 17 16 20 20 H 1.08009 * 119.99748 * 5.05437 * 19 18 17 21 21 C 1.38649 * 120.00394 * 185.06060 * 19 18 17 22 22 N 1.31560 * 119.99974 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00143 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47309 * 59.99715 * 23 21 19 25 25 H 1.48505 * 109.46996 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47100 * 299.99676 * 23 21 19 27 27 C 1.38078 * 119.96551 * 90.00259 * 13 12 10 28 28 H 1.09005 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47005 * 300.00068 * 1 2 3 30 30 H 1.08997 * 109.47065 * 60.00553 * 1 2 3 31 31 H 1.08002 * 120.00142 * 179.97438 * 2 1 3 32 32 H 1.08002 * 119.99783 * 359.97438 * 3 2 1 33 33 H 1.08993 * 109.47416 * 4.99747 * 4 3 2 34 34 H 1.09000 * 109.47181 * 244.99360 * 4 3 2 35 35 H 1.08996 * 109.46837 * 65.00610 * 7 5 4 36 36 H 1.09007 * 109.46971 * 184.99693 * 7 5 4 37 37 H 0.96695 * 113.99504 * 179.97438 * 8 7 5 38 38 H 0.96997 * 120.00396 * 25.00381 * 9 5 4 39 39 H 1.09001 * 109.47021 * 300.00388 * 12 10 9 40 40 H 1.08997 * 109.47345 * 60.00095 * 12 10 9 41 41 H 1.07993 * 119.93084 * 0.02562 * 14 13 12 42 42 H 1.07999 * 119.96552 * 180.26063 * 15 14 13 43 43 H 1.08004 * 120.03217 * 179.72459 * 16 15 14 44 44 H 0.96994 * 119.99922 * 179.97438 * 22 21 19 45 45 H 1.07999 * 120.03594 * 359.95226 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1345 0.0006 5 6 4.1794 1.9615 -1.1811 6 1 3.7452 1.5810 -2.1055 7 6 5.7043 1.8597 -1.2540 8 8 6.2683 2.2491 -0.0001 9 7 3.7917 3.3627 -1.0001 10 6 3.6654 4.1707 -2.0714 11 8 3.8722 3.7377 -3.1853 12 6 3.2671 5.6121 -1.8853 13 6 3.1967 6.2914 -3.2287 14 6 4.3175 6.9145 -3.7474 15 6 4.2582 7.5347 -4.9819 16 6 3.0760 7.5427 -5.6962 17 6 1.9478 6.9226 -5.1759 18 8 0.7844 6.9293 -5.8753 19 6 0.7587 7.6514 -7.0137 20 1 1.6607 8.1237 -7.3741 21 6 -0.4256 7.7878 -7.7216 22 7 -1.5243 7.2122 -7.2828 23 14 -0.4611 8.7875 -9.2991 24 1 0.4787 8.1929 -10.2833 25 1 -1.8360 8.7783 -9.8602 26 1 -0.0540 10.1857 -9.0083 27 6 2.0120 6.2961 -3.9380 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 2.0470 -0.9353 0.0004 32 1 1.6220 2.0698 -0.0004 33 1 4.0324 0.1108 -0.0886 34 1 4.0320 1.5691 0.9320 35 1 5.9895 0.8316 -1.4771 36 1 6.0753 2.5182 -2.0395 37 1 7.2340 2.2084 0.0263 38 1 3.6261 3.7090 -0.1094 39 1 2.2909 5.6599 -1.4027 40 1 4.0057 6.1155 -1.2615 41 1 5.2418 6.9131 -3.1889 42 1 5.1360 8.0167 -5.3862 43 1 3.0292 8.0311 -6.6584 44 1 -2.3529 7.3079 -7.7779 45 1 1.1363 5.8126 -3.5308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187129660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:54 Heat of formation + Delta-G solvation = -110.229818 kcal Electronic energy + Delta-G solvation = -25921.032710 eV Core-core repulsion = 22096.188493 eV Total energy + Delta-G solvation = -3824.844217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.21327 -40.50934 -38.68019 -37.96550 -36.68631 -35.13348 -34.34301 -33.54200 -31.91343 -30.84407 -29.19100 -28.16052 -27.20954 -25.40464 -23.40233 -23.06249 -21.90864 -21.38334 -20.36870 -19.49589 -18.78923 -18.52895 -17.84041 -17.12777 -16.80246 -16.61804 -16.11540 -16.04265 -15.67265 -15.46642 -15.32425 -14.97980 -14.78424 -14.61447 -14.47341 -14.29510 -14.04299 -14.00007 -13.59241 -13.19296 -12.95370 -12.86524 -12.77180 -12.46149 -12.44513 -12.38254 -12.21979 -12.20077 -12.12536 -11.86360 -11.20827 -11.07547 -10.83399 -10.76269 -10.08805 -9.77257 -9.63083 -8.97583 -8.46800 -6.15624 0.52687 0.76222 1.32122 1.33630 1.45134 1.50473 1.70826 2.17797 2.24973 2.85701 3.18555 3.40289 3.44727 3.72834 3.82655 3.99147 4.10361 4.14992 4.20274 4.31813 4.34505 4.40848 4.44664 4.50449 4.58184 4.61073 4.65053 4.71954 4.73924 4.80306 4.86551 5.01848 5.07059 5.12662 5.15158 5.18249 5.31263 5.55174 5.65449 5.73107 5.75929 5.80572 5.95191 6.02882 6.23894 6.63181 6.88197 6.97505 7.34488 7.79255 8.76672 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.002741 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.296230 B =10213.685199 C =11725.785299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.166 4.166 3 C -0.173 4.173 4 C -0.077 4.077 5 C 0.149 3.851 6 H 0.074 0.926 7 C 0.071 3.929 8 O -0.575 6.575 9 N -0.705 5.705 10 C 0.515 3.485 11 O -0.579 6.579 12 C -0.092 4.092 13 C -0.024 4.024 14 C -0.181 4.181 15 C -0.073 4.073 16 C -0.248 4.248 17 C 0.113 3.887 18 O -0.235 6.235 19 C -0.416 4.416 20 H 0.100 0.900 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.255 1.255 27 C -0.193 4.193 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.395 0.605 38 H 0.415 0.585 39 H 0.119 0.881 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.118 0.882 44 H 0.273 0.727 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.505 -10.450 18.775 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.184 4.184 3 C -0.191 4.191 4 C -0.115 4.115 5 C 0.044 3.956 6 H 0.092 0.908 7 C -0.008 4.008 8 O -0.382 6.382 9 N -0.358 5.358 10 C 0.303 3.697 11 O -0.458 6.458 12 C -0.132 4.132 13 C -0.025 4.025 14 C -0.199 4.199 15 C -0.091 4.091 16 C -0.267 4.267 17 C 0.063 3.937 18 O -0.142 6.142 19 C -0.492 4.492 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.561 5.561 23 Si 0.839 3.161 24 H -0.183 1.183 25 H -0.194 1.194 26 H -0.180 1.180 27 C -0.213 4.213 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.245 0.755 38 H 0.252 0.748 39 H 0.137 0.863 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.163 0.837 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.599 -10.831 18.139 25.125 hybrid contribution -0.071 0.390 -0.956 1.035 sum 13.527 -10.440 17.183 24.233 Atomic orbital electron populations 1.20891 0.93138 1.02869 1.01786 1.23052 0.96529 0.98319 1.00490 1.22879 0.96101 0.98324 1.01770 1.20771 0.92033 1.00762 0.97885 1.21045 0.93026 0.81799 0.99752 0.90808 1.22466 0.93225 0.99341 0.85791 1.86384 1.27070 1.91087 1.33697 1.45828 1.69985 1.10371 1.09596 1.20868 0.75989 0.88623 0.84231 1.90743 1.51547 1.77129 1.26421 1.20697 1.06374 0.91023 0.95064 1.19189 0.91908 0.95884 0.95479 1.20960 0.98445 1.03191 0.97330 1.21130 0.96360 0.97251 0.94371 1.21297 0.94198 1.08331 1.02864 1.19867 0.86895 0.94898 0.92080 1.83935 1.30898 1.64039 1.35317 1.21796 0.97916 1.30380 0.99076 0.88256 1.26617 0.93334 0.98752 1.03387 1.70186 1.00739 1.43927 1.41234 0.84640 0.78368 0.78108 0.75020 1.18326 1.19443 1.17958 1.20207 0.99580 1.07161 0.94315 0.91124 0.91218 0.92815 0.86359 0.87992 0.89114 0.88814 0.91155 0.95015 0.75511 0.74768 0.86305 0.84124 0.83612 0.83671 0.86411 0.91842 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 10.17 71.24 0.72 -1.33 16 2 C -0.17 -2.68 9.87 25.65 0.25 -2.43 16 3 C -0.17 -2.89 8.89 25.65 0.23 -2.67 16 4 C -0.08 -1.09 4.92 29.85 0.15 -0.95 16 5 C 0.15 2.82 2.36 44.99 0.11 2.93 16 6 H 0.07 1.83 7.58 -2.39 -0.02 1.81 16 7 C 0.07 1.15 6.85 71.98 0.49 1.65 16 8 O -0.57 -7.47 12.83 -148.98 -1.91 -9.38 16 9 N -0.70 -13.73 4.72 -442.52 -2.09 -15.82 16 10 C 0.52 14.26 7.79 87.66 0.68 14.95 16 11 O -0.58 -22.44 15.70 -3.05 -0.05 -22.48 16 12 C -0.09 -2.26 5.83 29.10 0.17 -2.09 16 13 C -0.02 -0.86 4.37 -19.88 -0.09 -0.95 16 14 C -0.18 -6.10 9.70 22.30 0.22 -5.89 16 15 C -0.07 -2.73 10.04 22.25 0.22 -2.50 16 16 C -0.25 -11.65 9.17 22.39 0.21 -11.44 16 17 C 0.11 6.05 6.65 22.58 0.15 6.20 16 18 O -0.23 -14.99 9.76 -22.77 -0.22 -15.22 16 19 C -0.42 -25.40 9.49 67.92 0.64 -24.76 16 20 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 21 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 22 N -0.92 -58.56 13.67 21.61 0.30 -58.26 16 23 Si 1.02 44.38 29.55 68.60 2.03 46.41 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 27 C -0.19 -8.95 9.64 22.39 0.22 -8.74 16 28 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.12 1.59 7.84 -2.91 -0.02 1.56 16 32 H 0.10 1.85 8.02 -2.91 -0.02 1.82 16 33 H 0.09 1.08 7.79 -2.39 -0.02 1.06 16 34 H 0.09 1.21 7.73 -2.39 -0.02 1.19 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.40 2.07 9.12 -74.06 -0.68 1.40 16 38 H 0.42 5.67 8.60 -92.71 -0.80 4.88 16 39 H 0.12 2.48 8.08 -2.39 -0.02 2.46 16 40 H 0.14 2.28 8.08 -2.39 -0.02 2.26 16 41 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 42 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 43 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 44 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 45 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -84.49 385.64 2.43 -82.06 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: -0.46 Total: 31.68 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 4.84 Total: -38.97 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -1.79 Total: -74.08 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -2.18 Total: -47.09 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -84.49 2.43 -82.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187129660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.173 kcal (2) G-P(sol) polarization free energy of solvation -84.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds