Wall clock time and date at job start Tue Mar 31 2020 12:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46905 * 2 1 4 4 C 1.53005 * 109.46839 * 240.00174 * 2 1 3 5 5 C 1.50701 * 109.46834 * 60.00037 * 4 2 1 6 6 H 1.08000 * 120.00303 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99703 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00161 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99898 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47359 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47475 * 120.00097 * 9 7 5 12 12 H 1.48503 * 109.47399 * 239.99732 * 9 7 5 13 13 C 1.52992 * 109.47279 * 120.00520 * 2 1 3 14 14 O 1.45207 * 109.47068 * 300.00019 * 13 2 1 15 15 C 1.34234 * 116.99956 * 180.02562 * 14 13 2 16 16 O 1.20826 * 119.99734 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99597 * 179.97438 * 15 14 13 18 18 N 1.46508 * 109.46844 * 179.97438 * 17 15 14 19 19 C 1.34780 * 119.99852 * 179.97438 * 18 17 15 20 20 O 1.21557 * 120.00061 * 0.02562 * 19 18 17 21 21 C 1.47845 * 119.99555 * 180.02562 * 19 18 17 22 22 C 1.39575 * 120.13807 * 180.02562 * 21 19 18 23 23 C 1.37966 * 119.85100 * 179.97438 * 22 21 19 24 24 C 1.38360 * 120.14194 * 359.97438 * 23 22 21 25 25 C 1.38356 * 120.29558 * 0.02562 * 24 23 22 26 26 C 1.37965 * 120.14370 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.46895 * 299.99194 * 1 2 3 28 28 H 1.08995 * 109.47180 * 59.99672 * 1 2 3 29 29 H 1.09003 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46902 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47469 * 300.00151 * 3 2 1 32 32 H 1.08999 * 109.47139 * 60.00961 * 3 2 1 33 33 H 1.08999 * 109.46886 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.46940 * 300.00153 * 4 2 1 35 35 H 0.96999 * 119.99914 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47345 * 179.97438 * 13 2 1 37 37 H 1.09003 * 109.47653 * 59.99629 * 13 2 1 38 38 H 1.08996 * 109.47310 * 59.99996 * 17 15 14 39 39 H 1.08996 * 109.47599 * 299.99408 * 17 15 14 40 40 H 0.97002 * 119.99932 * 0.02562 * 18 17 15 41 41 H 1.07998 * 120.08057 * 359.70005 * 22 21 19 42 42 H 1.08000 * 119.93065 * 180.02562 * 23 22 21 43 43 H 1.08003 * 119.85327 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.93243 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.07139 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8711 -0.4814 -3.7320 8 7 2.6271 -1.5507 -3.8528 9 14 1.2478 0.3988 -5.2571 10 1 0.4214 1.5645 -4.8529 11 1 2.4024 0.8665 -6.0655 12 1 0.4235 -0.5351 -6.0656 13 6 2.0401 -0.7213 1.2491 14 8 1.5561 -0.0369 2.4348 15 6 1.9172 -0.5468 3.6228 16 8 2.6143 -1.5326 3.6704 17 6 1.4532 0.1104 4.8971 18 7 1.9770 -0.6306 6.0474 19 6 1.6896 -0.2226 7.2994 20 8 0.9955 0.7599 7.4741 21 6 2.2187 -0.9700 8.4601 22 6 1.9225 -0.5504 9.7579 23 6 2.4189 -1.2526 10.8368 24 6 3.2082 -2.3708 10.6343 25 6 3.5055 -2.7920 9.3503 26 6 3.0155 -2.0988 8.2628 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8901 33 1 3.1300 -0.7209 -1.2496 34 1 1.6766 -1.7489 -1.2493 35 1 2.8620 -1.8817 -4.7338 36 1 3.1300 -0.7217 1.2489 37 1 1.6767 -1.7490 1.2491 38 1 0.3638 0.1097 4.9305 39 1 1.8171 1.1372 4.9298 40 1 2.5312 -1.4144 5.9079 41 1 1.3099 0.3246 9.9173 42 1 2.1902 -0.9293 11.8415 43 1 3.5947 -2.9168 11.4822 44 1 4.1219 -3.6659 9.1991 45 1 3.2486 -2.4284 7.2611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195085124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:33 Heat of formation + Delta-G solvation = -130.210821 kcal Electronic energy + Delta-G solvation = -25548.516460 eV Core-core repulsion = 21722.805802 eV Total energy + Delta-G solvation = -3825.710658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90752 -41.09648 -39.31326 -38.79331 -37.04865 -35.81950 -34.41945 -32.50362 -31.88656 -29.94985 -29.04510 -27.95677 -27.62905 -25.19796 -24.58651 -23.43594 -22.16513 -21.64450 -20.03029 -19.58202 -18.55556 -18.28479 -17.86654 -17.46194 -17.25818 -16.52307 -16.49707 -16.41857 -15.73716 -15.48196 -15.38836 -15.09045 -14.75348 -14.57655 -14.40300 -14.24326 -13.98349 -13.79369 -13.67901 -13.42841 -12.98761 -12.72342 -12.69436 -12.63479 -12.32277 -12.26694 -12.03694 -11.97335 -11.88966 -11.80327 -11.38771 -11.26203 -11.04212 -10.89491 -10.53570 -10.49545 -9.96570 -9.93378 -8.16398 -6.23657 -0.18414 0.40483 0.96784 1.21651 1.41497 1.43244 1.54914 1.74715 2.14175 2.43770 2.87758 3.18488 3.37942 3.61812 3.89305 3.90134 3.92788 4.00978 4.16865 4.22010 4.23446 4.28449 4.45782 4.48703 4.52068 4.59331 4.72956 4.83718 4.98510 5.01964 5.05409 5.09451 5.14150 5.31937 5.34922 5.42881 5.43845 5.46711 5.50567 5.50827 5.53476 5.74403 5.87468 5.93466 6.24650 6.27737 6.50950 6.90442 6.94578 7.43997 8.96237 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.038337 B = 0.001916 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.188101 B =14607.066412 C =15135.591940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.057 4.057 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.071 0.929 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.259 1.259 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.090 3.910 14 O -0.340 6.340 15 C 0.460 3.540 16 O -0.533 6.533 17 C 0.132 3.868 18 N -0.715 5.715 19 C 0.564 3.436 20 O -0.568 6.568 21 C -0.158 4.158 22 C -0.074 4.074 23 C -0.130 4.130 24 C -0.089 4.089 25 C -0.131 4.131 26 C -0.091 4.091 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.067 0.933 33 H -0.009 1.009 34 H -0.009 1.009 35 H 0.260 0.740 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.416 0.584 41 H 0.129 0.871 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.153 0.847 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 0.073 29.236 29.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.057 4.057 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.089 0.911 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.785 3.215 10 H -0.183 1.183 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.016 3.984 14 O -0.254 6.254 15 C 0.304 3.696 16 O -0.423 6.423 17 C 0.008 3.992 18 N -0.371 5.371 19 C 0.354 3.646 20 O -0.448 6.448 21 C -0.161 4.161 22 C -0.093 4.093 23 C -0.148 4.148 24 C -0.107 4.107 25 C -0.149 4.149 26 C -0.109 4.109 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.256 0.744 41 H 0.147 0.853 42 H 0.171 0.829 43 H 0.174 0.826 44 H 0.170 0.830 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.259 0.378 29.147 29.151 hybrid contribution 0.351 -0.496 -1.593 1.705 sum 0.092 -0.119 27.555 27.555 Atomic orbital electron populations 1.21665 0.93524 1.00975 1.01674 1.20654 0.97147 0.96591 0.91323 1.21663 0.99796 0.94703 1.01675 1.18988 0.94590 0.94363 0.91778 1.21578 1.30490 1.12147 0.90991 0.91083 1.25924 0.95645 0.95886 1.02647 1.70110 1.38672 1.24854 1.24125 0.85477 0.78078 0.78796 0.79184 1.18256 1.20940 1.20956 1.23206 0.98587 0.95498 0.81083 1.86453 1.69081 1.55396 1.14515 1.23813 0.76995 0.82193 0.86623 1.90652 1.36840 1.26769 1.88034 1.20726 1.02434 0.96908 0.79129 1.45674 1.54211 1.32882 1.04377 1.18554 0.79434 0.83665 0.82942 1.90772 1.39792 1.28087 1.86182 1.19835 1.04078 0.98953 0.93189 1.21412 0.97401 0.99270 0.91211 1.21491 0.97950 0.95811 0.99538 1.21828 0.95258 0.95462 0.98119 1.21499 1.00343 1.00800 0.92222 1.21569 0.95161 0.93445 1.00768 0.91381 0.92688 0.94142 0.94142 0.92693 0.91374 0.99025 0.99026 0.93082 0.91919 0.91924 0.85389 0.85382 0.74428 0.85263 0.82892 0.82556 0.82972 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.31 8.08 71.98 0.58 -3.73 16 2 C -0.06 -2.21 0.61 -52.18 -0.03 -2.24 16 3 C -0.12 -4.31 8.08 71.98 0.58 -3.73 16 4 C 0.04 2.00 4.04 29.85 0.12 2.12 16 5 C -0.51 -27.50 7.65 25.60 0.20 -27.30 16 6 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 8 N -0.94 -56.10 13.29 21.45 0.28 -55.81 16 9 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.09 3.10 4.32 71.98 0.31 3.41 16 14 O -0.34 -9.73 8.88 -51.45 -0.46 -10.19 16 15 C 0.46 11.74 8.03 71.23 0.57 12.31 16 16 O -0.53 -16.05 15.42 21.96 0.34 -15.71 16 17 C 0.13 2.58 6.27 85.63 0.54 3.12 16 18 N -0.71 -14.15 5.48 -469.70 -2.57 -16.72 16 19 C 0.56 12.55 7.77 86.79 0.67 13.23 16 20 O -0.57 -15.95 16.35 -3.89 -0.06 -16.01 16 21 C -0.16 -2.89 5.87 -20.09 -0.12 -3.00 16 22 C -0.07 -1.21 9.60 22.53 0.22 -0.99 16 23 C -0.13 -1.41 10.03 22.23 0.22 -1.19 16 24 C -0.09 -0.78 10.04 22.33 0.22 -0.55 16 25 C -0.13 -1.36 10.03 22.23 0.22 -1.13 16 26 C -0.09 -1.29 9.54 22.53 0.21 -1.07 16 27 H 0.07 2.04 7.68 -2.39 -0.02 2.02 16 28 H 0.05 2.08 6.62 -2.39 -0.02 2.06 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.05 2.08 6.62 -2.39 -0.02 2.06 16 32 H 0.07 2.04 7.68 -2.39 -0.02 2.02 16 33 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 34 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 37 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 38 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.42 7.61 5.48 -92.71 -0.51 7.10 16 41 H 0.13 2.21 7.65 -2.91 -0.02 2.19 16 42 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.16 0.44 8.06 -2.91 -0.02 0.42 16 44 H 0.15 0.86 8.06 -2.91 -0.02 0.83 16 45 H 0.14 1.62 6.41 -2.91 -0.02 1.60 16 Total: -1.00 -69.42 377.09 5.03 -64.39 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.49 Total: 15.08 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 4.99 Total: -10.50 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -2.29 Total: -72.53 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.18 Total: -41.92 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -69.42 5.03 -64.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195085124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.825 kcal (2) G-P(sol) polarization free energy of solvation -69.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds