Wall clock time and date at job start Tue Mar 31 2020 12:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46599 * 2 1 4 4 C 1.53004 * 109.47513 * 60.00198 * 3 2 1 5 5 C 1.52996 * 109.47166 * 299.99579 * 3 2 1 6 6 O 1.42902 * 109.47559 * 300.00466 * 5 3 2 7 7 N 1.46502 * 109.46482 * 179.97438 * 3 2 1 8 8 C 1.34782 * 119.99687 * 179.72159 * 7 3 2 9 9 O 1.21720 * 119.99872 * 0.27892 * 8 7 3 10 10 C 1.46253 * 120.00030 * 180.27701 * 8 7 3 11 11 C 1.35017 * 120.00138 * 173.21754 * 10 8 7 12 12 C 1.46969 * 119.99894 * 348.68486 * 11 10 8 13 13 C 1.40023 * 120.09627 * 316.39178 * 12 11 10 14 14 C 1.37601 * 119.89202 * 179.69923 * 13 12 11 15 15 C 1.39178 * 120.10386 * 0.60043 * 14 13 12 16 16 O 1.35568 * 119.90083 * 179.69831 * 15 14 13 17 17 C 1.34782 * 116.99876 * 174.33191 * 16 15 14 18 18 H 1.08004 * 120.00228 * 5.06754 * 17 16 15 19 19 C 1.38719 * 119.99740 * 185.05985 * 17 16 15 20 20 N 1.31508 * 120.00298 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99857 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47200 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46872 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47029 * 240.00074 * 21 19 17 25 25 C 1.39183 * 120.20078 * 359.67203 * 15 14 13 26 26 C 1.37593 * 120.09972 * 0.02989 * 25 15 14 27 27 H 1.09007 * 109.47078 * 300.00036 * 1 2 3 28 28 H 1.08998 * 109.46883 * 60.00147 * 1 2 3 29 29 H 1.09004 * 109.46799 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47424 * 239.99862 * 2 1 3 31 31 H 1.09002 * 109.47220 * 119.99468 * 2 1 3 32 32 H 1.08990 * 109.47069 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.46614 * 299.99879 * 4 3 2 34 34 H 1.08993 * 109.46945 * 59.99550 * 4 3 2 35 35 H 1.09004 * 109.46895 * 60.00692 * 5 3 2 36 36 H 1.09004 * 109.47274 * 180.02562 * 5 3 2 37 37 H 0.96693 * 114.00466 * 179.97438 * 6 5 3 38 38 H 0.96995 * 120.00861 * 0.02562 * 7 3 2 39 39 H 1.08000 * 120.00080 * 353.21532 * 10 8 7 40 40 H 1.07999 * 120.00258 * 168.67952 * 11 10 8 41 41 H 1.07995 * 120.05650 * 0.02562 * 13 12 11 42 42 H 1.07998 * 119.95077 * 180.27631 * 14 13 12 43 43 H 0.96993 * 120.00176 * 180.02562 * 20 19 17 44 44 H 1.07994 * 119.94960 * 179.97438 * 25 15 14 45 45 H 1.08002 * 120.04968 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1639 1.2493 5 6 1.5300 2.1637 -1.2493 6 8 2.0063 1.4901 -2.4161 7 7 3.5049 1.4425 0.0006 8 6 4.1788 2.6098 -0.0049 9 8 3.5702 3.6639 -0.0053 10 6 5.6413 2.6098 -0.0105 11 6 6.3159 3.7706 -0.1541 12 6 5.6009 4.9916 -0.5514 13 6 4.6459 4.9447 -1.5744 14 6 3.9746 6.0893 -1.9387 15 6 4.2525 7.2946 -1.3008 16 8 3.5930 8.4209 -1.6673 17 6 3.8207 9.5291 -0.9348 18 1 4.5634 9.5150 -0.1507 19 6 3.1014 10.6879 -1.1880 20 7 2.1969 10.7050 -2.1425 21 14 3.4176 12.2241 -0.1732 22 1 4.4768 11.9456 0.8295 23 1 3.8593 13.3251 -1.0665 24 1 2.1683 12.6228 0.5235 25 6 5.2050 7.3471 -0.2874 26 6 5.8769 6.2065 0.0878 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.8936 3.1913 1.2494 33 1 0.4400 2.1638 1.2492 34 1 1.8933 1.6501 2.1392 35 1 0.4399 2.1637 -1.2492 36 1 1.8936 3.1913 -1.2495 37 1 1.7207 1.8933 -3.2472 38 1 3.9900 0.6026 0.0006 39 1 6.1818 1.6814 0.1004 40 1 7.3808 3.8018 0.0230 41 1 4.4328 4.0108 -2.0729 42 1 3.2346 6.0533 -2.7246 43 1 1.6942 11.5154 -2.3198 44 1 5.4178 8.2846 0.2046 45 1 6.6156 6.2480 0.8746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255869692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:32 Heat of formation + Delta-G solvation = -87.102529 kcal Electronic energy + Delta-G solvation = -27222.344112 eV Core-core repulsion = 23398.502770 eV Total energy + Delta-G solvation = -3823.841342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.38553 -40.59796 -38.95565 -37.85565 -36.30301 -34.57363 -33.99730 -33.56470 -31.80840 -30.47112 -29.37260 -27.43414 -27.12355 -25.71428 -24.21518 -23.45378 -22.40718 -20.41175 -20.29228 -19.72393 -18.85842 -18.26578 -18.03598 -17.19019 -16.45816 -16.35098 -16.04368 -15.99075 -15.75610 -15.52303 -15.08500 -15.01234 -14.65683 -14.49451 -14.21340 -14.00906 -13.83021 -13.62523 -13.55100 -13.22455 -13.06323 -12.89399 -12.82141 -12.76977 -12.51208 -12.31879 -12.20865 -12.09394 -11.70437 -11.50214 -11.22992 -11.02283 -10.90710 -10.35074 -10.30637 -9.93826 -9.51907 -8.52762 -8.47968 -6.15544 0.02998 0.73166 1.15182 1.33283 1.44575 1.52425 2.16762 2.38432 2.55906 2.87615 3.22074 3.28657 3.53359 3.77306 3.93849 4.03261 4.09372 4.17678 4.19191 4.28303 4.37160 4.49713 4.55809 4.59637 4.69378 4.70465 4.74738 4.78142 4.82354 5.01764 5.06979 5.10085 5.11243 5.19252 5.27157 5.29172 5.34060 5.45058 5.51942 5.69096 5.73395 5.74294 5.87820 6.02985 6.26380 6.77394 6.83490 6.95698 7.55722 7.78127 8.74861 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016487 B = 0.003245 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.881780 B = 8627.572655 C = 9471.662787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C 0.182 3.818 4 C -0.162 4.162 5 C 0.061 3.939 6 O -0.574 6.574 7 N -0.705 5.705 8 C 0.529 3.471 9 O -0.556 6.556 10 C -0.231 4.231 11 C 0.000 4.000 12 C -0.157 4.157 13 C 0.020 3.980 14 C -0.219 4.219 15 C 0.128 3.872 16 O -0.232 6.232 17 C -0.414 4.414 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.021 2.979 22 H -0.251 1.251 23 H -0.266 1.266 24 H -0.268 1.268 25 C -0.259 4.259 26 C -0.048 4.048 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.035 0.965 37 H 0.388 0.612 38 H 0.411 0.589 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.273 0.727 44 H 0.118 0.882 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 -23.948 6.476 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C 0.096 3.904 4 C -0.220 4.220 5 C -0.018 4.018 6 O -0.381 6.381 7 N -0.357 5.357 8 C 0.320 3.680 9 O -0.437 6.437 10 C -0.252 4.252 11 C -0.019 4.019 12 C -0.158 4.158 13 C 0.001 3.999 14 C -0.239 4.239 15 C 0.077 3.923 16 O -0.138 6.138 17 C -0.490 4.490 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.840 3.160 22 H -0.174 1.174 23 H -0.190 1.190 24 H -0.193 1.193 25 C -0.278 4.278 26 C -0.066 4.066 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.237 0.763 38 H 0.247 0.753 39 H 0.186 0.814 40 H 0.183 0.817 41 H 0.134 0.866 42 H 0.118 0.882 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.360 -23.436 6.654 24.593 hybrid contribution -0.513 1.182 -0.410 1.352 sum 2.847 -22.254 6.245 23.288 Atomic orbital electron populations 1.21857 0.94335 1.02770 1.02034 1.21621 0.97180 0.92842 1.03289 1.20330 0.80183 0.97048 0.92877 1.22173 1.01909 1.01066 0.96836 1.22629 0.97610 0.95552 0.85963 1.86336 1.78080 1.57183 1.16474 1.45859 1.06213 1.08631 1.74969 1.18963 0.89577 0.83531 0.75976 1.90938 1.70741 1.31904 1.50097 1.23101 0.92099 1.00193 1.09774 1.22529 1.00108 0.89708 0.89542 1.18839 1.02076 0.94161 1.00686 1.20605 0.90803 0.94466 0.93976 1.20139 1.06477 0.91422 1.05829 1.19985 0.91543 0.87317 0.93407 1.83871 1.61080 1.16429 1.52420 1.21911 1.23012 0.87519 1.16561 0.88108 1.26649 0.94790 1.02224 0.98447 1.70176 1.23999 1.30038 1.31674 0.84506 0.78991 0.75052 0.77478 1.17433 1.19047 1.19319 1.21069 1.03061 1.00377 1.03319 1.21155 0.97274 0.90549 0.97631 0.92040 0.93069 0.90984 0.90757 0.89947 0.93537 0.90593 0.91016 0.92374 0.94688 0.76320 0.75287 0.81447 0.81732 0.86582 0.88232 0.91788 0.86405 0.83669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.21 71.98 0.66 -1.40 16 2 C -0.11 -1.64 4.96 30.60 0.15 -1.48 16 3 C 0.18 3.78 0.62 3.60 0.00 3.79 16 4 C -0.16 -3.70 8.05 71.98 0.58 -3.12 16 5 C 0.06 1.52 5.38 71.98 0.39 1.91 16 6 O -0.57 -12.91 12.85 -148.98 -1.91 -14.82 16 7 N -0.70 -14.24 4.97 -427.23 -2.12 -16.37 16 8 C 0.53 14.08 6.19 86.32 0.53 14.62 16 9 O -0.56 -20.21 8.38 -4.41 -0.04 -20.25 16 10 C -0.23 -4.76 9.90 23.61 0.23 -4.53 16 11 C 0.00 0.01 9.80 23.82 0.23 0.24 16 12 C -0.16 -5.47 4.54 -20.12 -0.09 -5.56 16 13 C 0.02 0.79 6.60 22.55 0.15 0.94 16 14 C -0.22 -10.64 9.97 22.35 0.22 -10.41 16 15 C 0.13 6.97 6.66 22.72 0.15 7.12 16 16 O -0.23 -14.84 9.74 -20.26 -0.20 -15.03 16 17 C -0.41 -25.30 9.48 67.93 0.64 -24.66 16 18 H 0.10 5.69 5.18 -2.91 -0.02 5.68 16 19 C -0.02 -1.40 5.49 84.86 0.47 -0.94 16 20 N -0.92 -58.35 13.67 21.62 0.30 -58.06 16 21 Si 1.02 44.34 29.55 68.60 2.03 46.37 16 22 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 C -0.26 -12.26 9.14 22.34 0.20 -12.06 16 26 C -0.05 -1.81 9.78 22.55 0.22 -1.59 16 27 H 0.06 0.81 6.43 -2.38 -0.02 0.80 16 28 H 0.05 0.78 6.43 -2.39 -0.02 0.77 16 29 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.07 1.15 7.68 -2.39 -0.02 1.13 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 1.45 6.17 -2.39 -0.01 1.44 16 33 H 0.08 1.52 6.43 -2.39 -0.02 1.50 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.31 6.43 -2.38 -0.02 1.29 16 36 H 0.03 1.17 6.15 -2.38 -0.01 1.16 16 37 H 0.39 6.55 9.12 -74.06 -0.68 5.87 16 38 H 0.41 5.66 8.45 -92.71 -0.78 4.88 16 39 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.12 4.22 7.02 -2.91 -0.02 4.19 16 42 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 43 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.12 5.61 5.62 -2.91 -0.02 5.59 16 45 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -81.93 362.34 2.38 -79.54 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: -0.42 Total: 35.76 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 4.75 Total: -37.14 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -1.83 Total: -74.42 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -2.15 Total: -50.10 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -81.93 2.38 -79.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255869692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.560 kcal (2) G-P(sol) polarization free energy of solvation -81.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds