Wall clock time and date at job start Tue Mar 31 2020 12:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47221 * 2 1 4 4 C 1.53005 * 109.47032 * 119.99777 * 2 1 3 5 5 C 1.52998 * 109.46926 * 65.17808 * 4 2 1 6 6 H 1.09000 * 109.47428 * 306.28898 * 5 4 2 7 7 C 1.53007 * 109.47242 * 66.29167 * 5 4 2 8 8 N 1.46503 * 109.46839 * 185.00093 * 7 5 4 9 9 C 1.34774 * 119.99476 * 180.02562 * 8 7 5 10 10 O 1.21545 * 120.00534 * 359.97438 * 9 8 7 11 11 C 1.47887 * 119.99623 * 179.97438 * 9 8 7 12 12 C 1.39922 * 120.02828 * 359.71753 * 11 9 8 13 13 C 1.38325 * 120.36058 * 179.79029 * 12 11 9 14 14 C 1.37753 * 120.40909 * 0.46581 * 13 12 11 15 15 C 1.40748 * 120.04302 * 359.79147 * 14 13 12 16 16 C 1.41436 * 120.17502 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00439 * 336.81507 * 16 15 14 18 18 C 1.39942 * 119.99589 * 156.82226 * 16 15 14 19 19 N 1.30827 * 119.99868 * 339.14004 * 18 16 15 20 20 Si 1.86792 * 120.00059 * 159.14243 * 18 16 15 21 21 H 1.48504 * 109.47102 * 59.99765 * 20 18 16 22 22 H 1.48502 * 109.47224 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47236 * 299.99810 * 20 18 16 24 24 C 1.38993 * 120.02659 * 179.97438 * 11 9 8 25 25 C 1.50706 * 109.47097 * 186.28798 * 5 4 2 26 26 O 1.20831 * 119.99885 * 268.04358 * 25 5 4 27 27 O 1.34225 * 119.99665 * 88.04120 * 25 5 4 28 28 H 1.08999 * 109.47551 * 56.35922 * 1 2 3 29 29 H 1.09003 * 109.47641 * 176.36035 * 1 2 3 30 30 H 1.09001 * 109.47065 * 296.35683 * 1 2 3 31 31 H 1.09007 * 109.47474 * 239.99617 * 2 1 3 32 32 H 1.09007 * 109.47116 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47062 * 299.99457 * 3 2 1 34 34 H 1.08996 * 109.47240 * 59.99951 * 3 2 1 35 35 H 1.08993 * 109.47249 * 305.17769 * 4 2 1 36 36 H 1.09009 * 109.46914 * 185.17391 * 4 2 1 37 37 H 1.09001 * 109.46672 * 304.99466 * 7 5 4 38 38 H 1.08997 * 109.47418 * 64.99902 * 7 5 4 39 39 H 0.97000 * 120.00257 * 359.97438 * 8 7 5 40 40 H 1.08005 * 119.81619 * 0.02562 * 12 11 9 41 41 H 1.08003 * 119.79246 * 180.23908 * 13 12 11 42 42 H 1.08007 * 119.97531 * 179.76664 * 14 13 12 43 43 H 0.97003 * 120.00294 * 180.02562 * 19 18 16 44 44 H 1.08004 * 120.20064 * 359.95210 * 24 11 9 45 45 H 0.96702 * 116.99445 * 184.74829 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6389 -2.1964 1.1859 6 1 0.5635 -2.2741 1.0261 7 6 2.3767 -2.8763 0.0307 8 7 1.9045 -4.2564 -0.1053 9 6 2.4176 -5.0527 -1.0640 10 8 3.2718 -4.6258 -1.8159 11 6 1.9413 -6.4461 -1.2010 12 6 0.9623 -6.9400 -0.3319 13 6 0.5087 -8.2409 -0.4566 14 6 1.0221 -9.0679 -1.4312 15 6 2.0113 -8.5904 -2.3112 16 6 2.5408 -9.4374 -3.3126 17 1 2.4929 -10.5097 -3.1938 18 6 3.1269 -8.8857 -4.4574 19 7 2.8410 -7.6594 -4.8125 20 14 4.3174 -9.9003 -5.4785 21 1 3.6282 -11.1167 -5.9790 22 1 4.7944 -9.0930 -6.6301 23 1 5.4757 -10.2978 -4.6386 24 6 2.4697 -7.2677 -2.1897 25 6 2.0043 -2.8724 2.4824 26 8 3.0784 -3.4132 2.6000 27 8 1.1365 -2.8737 3.5063 28 1 -0.3634 0.5693 -0.8555 29 1 -0.3634 -1.0256 -0.0652 30 1 -0.3633 0.4562 0.9208 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6029 -0.2637 2.1368 36 1 3.1260 -0.6416 1.2968 37 1 2.1826 -2.3330 -0.8941 38 1 3.4476 -2.8770 0.2338 39 1 1.2230 -4.5973 0.4950 40 1 0.5558 -6.3009 0.4381 41 1 -0.2501 -8.6114 0.2168 42 1 0.6655 -10.0836 -1.5199 43 1 3.2470 -7.2771 -5.6062 44 1 3.2280 -6.8917 -2.8606 45 1 1.4416 -3.2573 4.3399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262813667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:59 Heat of formation + Delta-G solvation = -136.639736 kcal Electronic energy + Delta-G solvation = -26569.551357 eV Core-core repulsion = 22743.561920 eV Total energy + Delta-G solvation = -3825.989437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.75070 -39.11063 -37.62154 -36.89242 -36.26531 -34.43867 -33.71943 -31.75738 -30.03109 -29.42431 -27.44233 -26.28078 -25.27885 -24.86840 -22.25938 -21.09186 -20.88511 -20.01086 -19.38718 -18.38327 -17.71465 -16.97174 -16.38926 -16.10142 -15.47360 -15.20108 -14.90540 -14.63465 -14.48375 -14.23218 -13.83522 -13.78323 -13.21684 -13.18079 -12.99856 -12.58930 -12.52596 -12.45650 -12.22207 -12.09911 -11.71359 -11.67282 -11.57236 -11.30069 -11.15058 -11.06881 -10.94342 -10.81589 -10.73432 -10.50779 -10.45963 -10.03517 -9.68195 -9.17630 -9.02233 -8.67756 -7.62294 -7.52755 -6.82320 -4.39707 2.01715 2.22857 2.78954 2.83107 3.08131 3.09720 3.18562 3.58651 3.88376 3.92681 4.29359 4.47869 4.55127 4.63505 4.70025 4.89590 5.06468 5.14827 5.31588 5.35312 5.42489 5.53540 5.60822 5.61510 5.63039 5.69871 5.80104 5.89924 5.94329 6.04815 6.09199 6.11668 6.28007 6.33041 6.72781 6.79857 6.99069 7.02754 7.21247 7.38921 7.70369 7.71969 7.76148 7.92719 8.06826 8.19073 8.50717 8.80230 8.84358 8.94765 10.12944 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.003032 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.027621 B = 9232.578402 C =10152.300452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 C -0.147 4.147 4 C -0.101 4.101 5 C -0.093 4.093 6 H 0.113 0.887 7 C 0.131 3.869 8 N -0.738 5.738 9 C 0.567 3.433 10 O -0.544 6.544 11 C -0.126 4.126 12 C -0.220 4.220 13 C -0.096 4.096 14 C -0.214 4.214 15 C 0.100 3.900 16 C -0.460 4.460 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.779 5.779 20 Si 0.909 3.091 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.094 4.094 25 C 0.477 3.523 26 O -0.498 6.498 27 O -0.518 6.518 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.396 0.604 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.286 0.714 44 H 0.132 0.868 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 14.789 11.246 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.119 4.119 3 C -0.204 4.204 4 C -0.139 4.139 5 C -0.113 4.113 6 H 0.131 0.869 7 C 0.007 3.993 8 N -0.392 5.392 9 C 0.358 3.642 10 O -0.422 6.422 11 C -0.129 4.129 12 C -0.241 4.241 13 C -0.114 4.114 14 C -0.234 4.234 15 C 0.097 3.903 16 C -0.489 4.489 17 H 0.100 0.900 18 C -0.145 4.145 19 N -0.402 5.402 20 Si 0.733 3.267 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.114 4.114 25 C 0.318 3.682 26 O -0.384 6.384 27 O -0.330 6.330 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.231 0.769 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.150 0.850 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -3.747 15.302 10.150 18.741 hybrid contribution 0.249 -0.846 0.470 1.000 sum -3.498 14.456 10.620 18.276 Atomic orbital electron populations 1.21927 0.94844 1.02197 1.01968 1.21213 0.96313 0.96453 0.97970 1.21821 1.01161 0.95516 1.01888 1.21582 1.02236 0.90478 0.99596 1.21412 1.04141 0.96583 0.89151 0.86881 1.21283 0.99244 0.82664 0.96094 1.45909 1.44386 1.12280 1.36626 1.18801 0.80493 0.86124 0.78800 1.90693 1.32034 1.75887 1.43584 1.19446 1.01218 0.91976 1.00271 1.20294 1.04351 0.96603 1.02811 1.20420 0.99100 0.93921 0.97958 1.21070 1.01544 0.99353 1.01449 1.17583 0.89331 0.91871 0.91502 1.19558 1.33137 0.94738 1.01469 0.90039 1.25973 0.95490 0.95168 0.97853 1.69800 1.33805 1.14623 1.21995 0.86344 0.81044 0.80317 0.78955 1.18955 1.20197 1.18670 1.21591 0.99838 0.93832 0.96185 1.23444 0.81933 0.77194 0.85669 1.90781 1.24007 1.41128 1.82524 1.84538 1.47461 1.77056 1.23943 0.92388 0.92237 0.92539 0.90045 0.92490 0.92374 0.92694 0.90463 0.90507 0.89863 0.90332 0.76911 0.89527 0.88944 0.88626 0.90329 0.84992 0.73184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.87 37.15 0.33 -0.77 16 2 C -0.10 -0.78 2.81 -90.62 -0.25 -1.04 16 3 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 4 C -0.10 -0.82 4.12 -26.73 -0.11 -0.93 16 5 C -0.09 -0.95 2.21 -91.77 -0.20 -1.15 16 6 H 0.11 1.00 6.38 -51.93 -0.33 0.67 16 7 C 0.13 1.84 4.63 -4.04 -0.02 1.82 16 8 N -0.74 -12.66 5.30 -61.23 -0.32 -12.98 16 9 C 0.57 12.78 7.77 -12.31 -0.10 12.68 16 10 O -0.54 -13.91 16.33 5.33 0.09 -13.82 16 11 C -0.13 -3.05 5.87 -105.04 -0.62 -3.67 16 12 C -0.22 -4.76 9.55 -38.92 -0.37 -5.14 16 13 C -0.10 -2.08 10.01 -39.73 -0.40 -2.48 16 14 C -0.21 -5.17 9.78 -38.81 -0.38 -5.54 16 15 C 0.10 2.67 5.58 -106.87 -0.60 2.08 16 16 C -0.46 -12.21 9.04 -37.73 -0.34 -12.55 16 17 H 0.08 2.04 7.93 -52.49 -0.42 1.63 16 18 C 0.08 1.91 5.08 -17.34 -0.09 1.82 16 19 N -0.78 -20.70 11.06 55.55 0.61 -20.08 16 20 Si 0.91 18.90 29.61 -169.99 -5.03 13.87 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 C -0.09 -2.56 8.26 -38.44 -0.32 -2.88 16 25 C 0.48 5.50 6.93 36.01 0.25 5.75 16 26 O -0.50 -7.68 16.80 -18.75 -0.31 -8.00 16 27 O -0.52 -4.47 13.42 -39.24 -0.53 -5.00 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.46 6.61 -51.93 -0.34 0.11 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.72 6.30 -51.93 -0.33 0.40 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.08 1.13 6.30 -51.93 -0.33 0.81 16 38 H 0.08 1.25 7.68 -51.93 -0.40 0.85 16 39 H 0.40 6.06 6.25 -40.82 -0.25 5.80 16 40 H 0.09 1.57 6.38 -52.48 -0.33 1.23 16 41 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.10 2.14 8.06 -52.48 -0.42 1.71 16 43 H 0.29 6.98 8.30 -40.82 -0.34 6.64 16 44 H 0.13 3.86 5.75 -52.48 -0.30 3.56 16 45 H 0.41 1.99 9.10 45.56 0.41 2.41 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -32.75 373.60 -8.30 -41.05 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.56 Total: 11.98 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -2.87 Total: -12.65 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.29 Total: -33.07 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.75 Total: -26.81 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.75 -8.30 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262813667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.592 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds