Wall clock time and date at job start Tue Mar 31 2020 12:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47221 * 2 1 4 4 C 1.53005 * 109.47032 * 119.99777 * 2 1 3 5 5 C 1.52998 * 109.46926 * 65.17808 * 4 2 1 6 6 H 1.09000 * 109.47428 * 306.28898 * 5 4 2 7 7 C 1.53007 * 109.47242 * 66.29167 * 5 4 2 8 8 N 1.46503 * 109.46839 * 185.00093 * 7 5 4 9 9 C 1.34774 * 119.99476 * 180.02562 * 8 7 5 10 10 O 1.21545 * 120.00534 * 359.97438 * 9 8 7 11 11 C 1.47887 * 119.99623 * 179.97438 * 9 8 7 12 12 C 1.39922 * 120.02828 * 359.71753 * 11 9 8 13 13 C 1.38325 * 120.36058 * 179.79029 * 12 11 9 14 14 C 1.37753 * 120.40909 * 0.46581 * 13 12 11 15 15 C 1.40748 * 120.04302 * 359.79147 * 14 13 12 16 16 C 1.41436 * 120.17502 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00439 * 336.81507 * 16 15 14 18 18 C 1.39942 * 119.99589 * 156.82226 * 16 15 14 19 19 N 1.30827 * 119.99868 * 339.14004 * 18 16 15 20 20 Si 1.86792 * 120.00059 * 159.14243 * 18 16 15 21 21 H 1.48504 * 109.47102 * 59.99765 * 20 18 16 22 22 H 1.48502 * 109.47224 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47236 * 299.99810 * 20 18 16 24 24 C 1.38993 * 120.02659 * 179.97438 * 11 9 8 25 25 C 1.50706 * 109.47097 * 186.28798 * 5 4 2 26 26 O 1.20831 * 119.99885 * 268.04358 * 25 5 4 27 27 O 1.34225 * 119.99665 * 88.04120 * 25 5 4 28 28 H 1.08999 * 109.47551 * 56.35922 * 1 2 3 29 29 H 1.09003 * 109.47641 * 176.36035 * 1 2 3 30 30 H 1.09001 * 109.47065 * 296.35683 * 1 2 3 31 31 H 1.09007 * 109.47474 * 239.99617 * 2 1 3 32 32 H 1.09007 * 109.47116 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47062 * 299.99457 * 3 2 1 34 34 H 1.08996 * 109.47240 * 59.99951 * 3 2 1 35 35 H 1.08993 * 109.47249 * 305.17769 * 4 2 1 36 36 H 1.09009 * 109.46914 * 185.17391 * 4 2 1 37 37 H 1.09001 * 109.46672 * 304.99466 * 7 5 4 38 38 H 1.08997 * 109.47418 * 64.99902 * 7 5 4 39 39 H 0.97000 * 120.00257 * 359.97438 * 8 7 5 40 40 H 1.08005 * 119.81619 * 0.02562 * 12 11 9 41 41 H 1.08003 * 119.79246 * 180.23908 * 13 12 11 42 42 H 1.08007 * 119.97531 * 179.76664 * 14 13 12 43 43 H 0.97003 * 120.00294 * 180.02562 * 19 18 16 44 44 H 1.08004 * 120.20064 * 359.95210 * 24 11 9 45 45 H 0.96702 * 116.99445 * 184.74829 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6389 -2.1964 1.1859 6 1 0.5635 -2.2741 1.0261 7 6 2.3767 -2.8763 0.0307 8 7 1.9045 -4.2564 -0.1053 9 6 2.4176 -5.0527 -1.0640 10 8 3.2718 -4.6258 -1.8159 11 6 1.9413 -6.4461 -1.2010 12 6 0.9623 -6.9400 -0.3319 13 6 0.5087 -8.2409 -0.4566 14 6 1.0221 -9.0679 -1.4312 15 6 2.0113 -8.5904 -2.3112 16 6 2.5408 -9.4374 -3.3126 17 1 2.4929 -10.5097 -3.1938 18 6 3.1269 -8.8857 -4.4574 19 7 2.8410 -7.6594 -4.8125 20 14 4.3174 -9.9003 -5.4785 21 1 3.6282 -11.1167 -5.9790 22 1 4.7944 -9.0930 -6.6301 23 1 5.4757 -10.2978 -4.6386 24 6 2.4697 -7.2677 -2.1897 25 6 2.0043 -2.8724 2.4824 26 8 3.0784 -3.4132 2.6000 27 8 1.1365 -2.8737 3.5063 28 1 -0.3634 0.5693 -0.8555 29 1 -0.3634 -1.0256 -0.0652 30 1 -0.3633 0.4562 0.9208 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6029 -0.2637 2.1368 36 1 3.1260 -0.6416 1.2968 37 1 2.1826 -2.3330 -0.8941 38 1 3.4476 -2.8770 0.2338 39 1 1.2230 -4.5973 0.4950 40 1 0.5558 -6.3009 0.4381 41 1 -0.2501 -8.6114 0.2168 42 1 0.6655 -10.0836 -1.5199 43 1 3.2470 -7.2771 -5.6062 44 1 3.2280 -6.8917 -2.8606 45 1 1.4416 -3.2573 4.3399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262813667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:58 Heat of formation + Delta-G solvation = -157.741146 kcal Electronic energy + Delta-G solvation = -26570.466383 eV Core-core repulsion = 22743.561920 eV Total energy + Delta-G solvation = -3826.904463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.74035 -40.74869 -38.92378 -38.23338 -37.12425 -35.86668 -35.51455 -32.95995 -31.72177 -31.28439 -27.98124 -27.60197 -26.91759 -25.83729 -23.95121 -22.81927 -21.85324 -21.31539 -20.58963 -19.48008 -19.24585 -18.08612 -17.75275 -17.44875 -16.86601 -16.62311 -16.45464 -16.00417 -15.88656 -15.31804 -15.06514 -14.94869 -14.54859 -14.46471 -14.28892 -14.16893 -13.91304 -13.50694 -13.21190 -13.05799 -12.97177 -12.81872 -12.76774 -12.55906 -12.53889 -12.37635 -12.21364 -12.03748 -11.93332 -11.60374 -11.53360 -11.47657 -11.28824 -11.05341 -10.83695 -10.21548 -9.50527 -9.41733 -8.70568 -6.38292 0.35550 0.99564 1.11922 1.35544 1.47111 1.50627 1.99384 2.07690 2.14730 2.18331 2.75872 3.36640 3.68251 3.71518 3.88054 3.99757 4.04951 4.11882 4.32902 4.38141 4.42495 4.52499 4.56013 4.68502 4.81149 4.83082 4.89567 4.90108 4.99037 5.06972 5.08770 5.12721 5.17056 5.27937 5.32319 5.37959 5.48256 5.49750 5.51791 5.59593 5.83686 5.90551 6.02820 6.26181 6.43885 6.62341 6.85781 6.92900 6.95726 7.23650 8.26833 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.003032 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.027621 B = 9232.578402 C =10152.300452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 C -0.146 4.146 4 C -0.095 4.095 5 C -0.084 4.084 6 H 0.136 0.864 7 C 0.129 3.871 8 N -0.715 5.715 9 C 0.562 3.438 10 O -0.586 6.586 11 C -0.138 4.138 12 C -0.203 4.203 13 C -0.093 4.093 14 C -0.220 4.220 15 C 0.069 3.931 16 C -0.498 4.498 17 H 0.085 0.915 18 C 0.032 3.968 19 N -0.819 5.819 20 Si 0.982 3.018 21 H -0.251 1.251 22 H -0.271 1.271 23 H -0.262 1.262 24 C -0.134 4.134 25 C 0.483 3.517 26 O -0.544 6.544 27 O -0.505 6.505 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.408 0.592 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.110 0.890 43 H 0.288 0.712 44 H 0.097 0.903 45 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.557 15.442 13.482 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.119 4.119 3 C -0.203 4.203 4 C -0.133 4.133 5 C -0.103 4.103 6 H 0.154 0.846 7 C 0.006 3.994 8 N -0.368 5.368 9 C 0.352 3.648 10 O -0.467 6.467 11 C -0.141 4.141 12 C -0.222 4.222 13 C -0.111 4.111 14 C -0.240 4.240 15 C 0.066 3.934 16 C -0.527 4.527 17 H 0.104 0.896 18 C -0.184 4.184 19 N -0.444 5.444 20 Si 0.802 3.198 21 H -0.174 1.174 22 H -0.195 1.195 23 H -0.187 1.187 24 C -0.154 4.154 25 C 0.326 3.674 26 O -0.434 6.434 27 O -0.318 6.318 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.245 0.755 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.128 0.872 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -5.785 15.973 12.457 21.066 hybrid contribution 0.726 -0.953 -0.009 1.198 sum -5.058 15.020 12.448 20.153 Atomic orbital electron populations 1.21931 0.94087 1.02137 1.02737 1.21194 0.96920 0.96822 0.97009 1.21810 1.00962 0.94926 1.02579 1.21591 1.02047 0.88964 1.00690 1.21377 1.04676 0.97149 0.87081 0.84614 1.21425 0.98648 0.81088 0.98280 1.45708 1.43366 1.12955 1.34746 1.18718 0.80362 0.86189 0.79541 1.90666 1.33997 1.76535 1.45522 1.19768 1.01629 0.92729 1.00021 1.20778 1.02154 0.97198 1.02113 1.20910 0.99210 0.93444 0.97487 1.21391 1.00749 1.00484 1.01336 1.17937 0.90583 0.92112 0.92719 1.19847 1.35319 0.95025 1.02496 0.89649 1.26872 0.96599 0.96175 0.98795 1.69891 1.35232 1.16482 1.22759 0.85257 0.78400 0.78944 0.77202 1.17435 1.19523 1.18684 1.21401 1.01048 0.95102 0.97869 1.23555 0.81306 0.76143 0.86351 1.90786 1.25932 1.43271 1.83370 1.84491 1.46304 1.76637 1.24381 0.92398 0.92572 0.91160 0.91780 0.92868 0.92252 0.91451 0.88260 0.91199 0.89437 0.92506 0.75489 0.85138 0.84304 0.87226 0.90152 0.88451 0.71023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.87 71.98 0.64 -1.17 16 2 C -0.10 -1.39 2.81 -10.80 -0.03 -1.42 16 3 C -0.15 -1.72 9.19 71.98 0.66 -1.06 16 4 C -0.09 -1.33 4.12 30.60 0.13 -1.20 16 5 C -0.08 -1.51 2.21 -11.54 -0.03 -1.54 16 6 H 0.14 1.91 6.38 -2.39 -0.02 1.89 16 7 C 0.13 3.55 4.63 86.38 0.40 3.95 16 8 N -0.71 -23.81 5.30 -465.92 -2.47 -26.28 16 9 C 0.56 25.77 7.77 86.80 0.67 26.45 16 10 O -0.59 -31.46 16.33 -3.86 -0.06 -31.52 16 11 C -0.14 -6.77 5.87 -20.13 -0.12 -6.89 16 12 C -0.20 -8.24 9.55 22.70 0.22 -8.03 16 13 C -0.09 -3.75 10.01 22.18 0.22 -3.53 16 14 C -0.22 -10.45 9.78 22.77 0.22 -10.23 16 15 C 0.07 3.81 5.58 -21.32 -0.12 3.69 16 16 C -0.50 -27.48 9.04 23.47 0.21 -27.26 16 17 H 0.09 4.43 7.93 -2.91 -0.02 4.40 16 18 C 0.03 1.67 5.08 85.26 0.43 2.10 16 19 N -0.82 -46.05 11.06 21.83 0.24 -45.81 16 20 Si 0.98 40.04 29.61 68.60 2.03 42.07 16 21 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 22 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 24 C -0.13 -7.61 8.26 23.01 0.19 -7.42 16 25 C 0.48 9.96 6.93 71.24 0.49 10.45 16 26 O -0.54 -16.15 16.80 21.95 0.37 -15.78 16 27 O -0.50 -6.83 13.42 -51.36 -0.69 -7.52 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.70 6.61 -2.39 -0.02 0.69 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 1.11 6.30 -2.38 -0.02 1.09 16 32 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.09 2.38 6.30 -2.39 -0.02 2.37 16 38 H 0.06 1.86 7.68 -2.39 -0.02 1.84 16 39 H 0.41 11.34 6.25 -92.71 -0.58 10.76 16 40 H 0.13 4.10 6.38 -2.91 -0.02 4.08 16 41 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 42 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 43 H 0.29 14.92 8.30 -92.71 -0.77 14.15 16 44 H 0.10 6.15 5.75 -2.91 -0.02 6.13 16 45 H 0.43 2.64 9.10 -74.06 -0.67 1.97 16 Total: -1.00 -76.16 373.60 3.39 -72.76 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -0.22 Total: 35.17 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 4.20 Total: -23.10 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -2.23 Total: -72.09 kcal Atomic # 8 Polarization: -54.43 SS G_CDS: -0.38 Total: -54.82 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -76.16 3.39 -72.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262813667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.977 kcal (2) G-P(sol) polarization free energy of solvation -76.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds