Wall clock time and date at job start Tue Mar 31 2020 12:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47325 * 2 1 4 4 C 1.53006 * 109.46954 * 240.00197 * 2 1 3 5 5 C 1.53003 * 109.47278 * 186.46028 * 4 2 1 6 6 H 1.09001 * 109.46715 * 304.36763 * 5 4 2 7 7 C 1.52999 * 109.47151 * 184.36751 * 5 4 2 8 8 N 1.46492 * 109.46929 * 175.00121 * 7 5 4 9 9 C 1.34782 * 119.99789 * 180.02562 * 8 7 5 10 10 O 1.21549 * 120.00083 * 359.97438 * 9 8 7 11 11 C 1.47888 * 119.99786 * 180.02562 * 9 8 7 12 12 C 1.39919 * 120.02569 * 359.71868 * 11 9 8 13 13 C 1.38331 * 120.35741 * 179.78662 * 12 11 9 14 14 C 1.37753 * 120.41276 * 0.47004 * 13 12 11 15 15 C 1.40750 * 120.03692 * 359.79129 * 14 13 12 16 16 C 1.41443 * 120.17909 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00551 * 153.44838 * 16 15 14 18 18 C 1.39945 * 119.99454 * 333.44765 * 16 15 14 19 19 N 1.30827 * 119.99338 * 156.68724 * 18 16 15 20 20 Si 1.86797 * 120.00278 * 336.68899 * 18 16 15 21 21 H 1.48507 * 109.47145 * 94.16994 * 20 18 16 22 22 H 1.48496 * 109.47267 * 214.16759 * 20 18 16 23 23 H 1.48498 * 109.46993 * 334.17297 * 20 18 16 24 24 C 1.38991 * 120.02251 * 179.97438 * 11 9 8 25 25 C 1.50697 * 109.47124 * 64.36561 * 5 4 2 26 26 O 1.20833 * 119.99686 * 35.51597 * 25 5 4 27 27 O 1.34227 * 120.00394 * 215.51752 * 25 5 4 28 28 H 1.09007 * 109.47144 * 295.68029 * 1 2 3 29 29 H 1.08998 * 109.47353 * 55.67113 * 1 2 3 30 30 H 1.08996 * 109.47611 * 175.67961 * 1 2 3 31 31 H 1.08993 * 109.47337 * 120.00309 * 2 1 3 32 32 H 1.08998 * 109.47166 * 60.00450 * 3 2 1 33 33 H 1.08999 * 109.47326 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47022 * 300.00034 * 3 2 1 35 35 H 1.08998 * 109.47154 * 306.45959 * 4 2 1 36 36 H 1.09002 * 109.47199 * 66.46144 * 4 2 1 37 37 H 1.09000 * 109.47141 * 295.00071 * 7 5 4 38 38 H 1.09000 * 109.47244 * 54.99936 * 7 5 4 39 39 H 0.96999 * 120.00583 * 359.97438 * 8 7 5 40 40 H 1.07996 * 119.82476 * 0.02562 * 12 11 9 41 41 H 1.08004 * 119.79633 * 180.24057 * 13 12 11 42 42 H 1.08003 * 119.98368 * 179.75911 * 14 13 12 43 43 H 0.97005 * 119.99521 * 180.02562 * 19 18 16 44 44 H 1.08004 * 120.20541 * 359.95979 * 24 11 9 45 45 H 0.96694 * 117.00165 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5613 -0.8634 -1.1709 6 1 4.0114 0.1198 -1.0332 7 6 4.0829 -1.4860 -2.4675 8 7 5.5473 -1.5125 -2.4418 9 6 6.2305 -2.0207 -3.4866 10 8 5.6315 -2.4573 -4.4500 11 6 7.7089 -2.0479 -3.4605 12 6 8.3991 -1.5410 -2.3539 13 6 9.7817 -1.5671 -2.3203 14 6 10.4954 -2.0834 -3.3794 15 6 9.8186 -2.5928 -4.5035 16 6 10.5484 -3.1231 -5.5929 17 1 10.1008 -3.8718 -6.2296 18 6 11.8507 -2.6774 -5.8458 19 7 12.6824 -3.4336 -6.5151 20 14 12.4015 -1.0029 -5.2276 21 1 13.0706 -1.1569 -3.9108 22 1 13.3522 -0.4048 -6.1989 23 1 11.2195 -0.1159 -5.0815 24 6 8.4140 -2.5723 -4.5374 25 6 3.9237 -1.7492 -0.0069 26 8 3.2162 -2.6847 0.2835 27 8 5.0323 -1.4991 0.7073 28 1 -0.3634 0.4454 0.9262 29 1 -0.3634 0.5795 -0.8486 30 1 -0.3634 -1.0247 -0.0774 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.5852 -1.7101 -1.3090 36 1 1.7741 -0.1450 -2.1355 37 1 3.7026 -2.5033 -2.5607 38 1 3.7450 -0.8927 -3.3171 39 1 6.0254 -1.1638 -1.6733 40 1 7.8493 -1.1307 -1.5199 41 1 10.3051 -1.1769 -1.4599 42 1 11.5749 -2.0967 -3.3475 43 1 13.5852 -3.1249 -6.6901 44 1 7.8855 -2.9615 -5.3952 45 1 5.2231 -2.0946 1.4448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262813670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:01 Heat of formation + Delta-G solvation = -158.655312 kcal Electronic energy + Delta-G solvation = -26360.469725 eV Core-core repulsion = 22533.525622 eV Total energy + Delta-G solvation = -3826.944104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.76267 -40.86362 -39.07482 -38.07758 -36.99591 -36.08223 -35.58334 -33.17945 -32.10324 -31.62456 -28.02240 -27.60239 -26.81309 -25.72962 -24.32442 -22.48027 -21.81866 -21.67350 -20.63468 -19.69821 -19.23251 -18.14556 -17.84177 -17.35434 -17.28254 -16.61511 -16.45409 -16.12228 -15.82801 -15.47046 -15.31074 -14.80489 -14.70068 -14.54370 -14.39885 -14.38386 -13.80542 -13.64891 -13.30412 -13.22583 -13.06901 -12.86811 -12.79688 -12.72997 -12.55964 -12.48290 -12.29767 -11.80546 -11.76037 -11.65760 -11.54515 -11.53109 -11.42305 -11.17384 -10.84564 -10.28122 -9.63688 -9.57924 -8.95590 -6.53920 0.18063 0.75483 1.13122 1.26150 1.42805 1.49072 1.93119 2.03298 2.08195 2.12820 2.62808 3.43413 3.47211 3.63102 3.88627 3.92289 4.06107 4.13013 4.27828 4.28043 4.41695 4.45313 4.55490 4.58523 4.69048 4.75299 4.83637 4.88688 4.90030 4.93444 5.00837 5.06970 5.12948 5.15064 5.27199 5.32035 5.42797 5.43618 5.49872 5.61411 5.66559 5.73423 5.85333 6.10499 6.29827 6.50123 6.67150 6.73504 6.95300 7.17013 8.12929 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026453 B = 0.002584 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.228004 B =10835.136887 C =11047.932326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.152 4.152 4 C -0.102 4.102 5 C -0.084 4.084 6 H 0.137 0.863 7 C 0.128 3.872 8 N -0.715 5.715 9 C 0.563 3.437 10 O -0.582 6.582 11 C -0.113 4.113 12 C -0.187 4.187 13 C -0.079 4.079 14 C -0.232 4.232 15 C 0.066 3.934 16 C -0.489 4.489 17 H 0.050 0.950 18 C 0.048 3.952 19 N -0.839 5.839 20 Si 0.968 3.032 21 H -0.245 1.245 22 H -0.276 1.276 23 H -0.253 1.253 24 C -0.171 4.171 25 C 0.485 3.515 26 O -0.543 6.543 27 O -0.509 6.509 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.416 0.584 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.107 0.893 43 H 0.297 0.703 44 H 0.088 0.912 45 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.610 12.847 17.389 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.209 4.209 4 C -0.140 4.140 5 C -0.103 4.103 6 H 0.155 0.845 7 C 0.004 3.996 8 N -0.370 5.370 9 C 0.353 3.647 10 O -0.463 6.463 11 C -0.116 4.116 12 C -0.206 4.206 13 C -0.097 4.097 14 C -0.251 4.251 15 C 0.063 3.937 16 C -0.518 4.518 17 H 0.068 0.932 18 C -0.168 4.168 19 N -0.464 5.464 20 Si 0.790 3.210 21 H -0.170 1.170 22 H -0.202 1.202 23 H -0.177 1.177 24 C -0.191 4.191 25 C 0.328 3.672 26 O -0.433 6.433 27 O -0.323 6.323 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.255 0.745 40 H 0.165 0.835 41 H 0.165 0.835 42 H 0.125 0.875 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -17.100 12.441 16.334 26.720 hybrid contribution 0.814 -0.666 0.260 1.084 sum -16.286 11.775 16.594 26.062 Atomic orbital electron populations 1.21803 0.94189 1.01779 1.02524 1.21121 0.96847 0.96851 0.96776 1.21950 1.01419 0.94788 1.02738 1.21656 0.89512 1.02387 1.00435 1.21448 1.00066 1.00145 0.88677 0.84527 1.21387 0.79297 1.01751 0.97139 1.45814 1.07160 1.63254 1.20726 1.18603 0.87758 0.76337 0.82035 1.90698 1.71317 1.48804 1.35519 1.19669 0.91322 1.03669 0.96910 1.20966 0.94207 1.07262 0.98182 1.21032 0.94131 0.96982 0.97528 1.21407 0.99043 1.09263 0.95404 1.17770 0.91895 0.91011 0.93005 1.19466 0.98318 1.21605 1.12385 0.93221 1.26949 0.94826 1.02223 0.92840 1.69761 1.06734 1.37625 1.32326 0.85482 0.79078 0.77600 0.78848 1.16959 1.20188 1.17693 1.21161 0.93625 1.05928 0.98396 1.23617 0.77523 0.83175 0.82878 1.90721 1.52238 1.31393 1.68951 1.84488 1.42547 1.59222 1.46001 0.92197 0.91491 0.93267 0.92938 0.92247 0.92052 0.91409 0.91357 0.87739 0.92310 0.88408 0.74489 0.83475 0.83513 0.87539 0.89274 0.89339 0.71070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.19 71.98 0.66 -0.95 16 2 C -0.10 -1.17 2.81 -10.79 -0.03 -1.20 16 3 C -0.15 -1.38 8.98 71.98 0.65 -0.73 16 4 C -0.10 -1.34 3.90 30.60 0.12 -1.22 16 5 C -0.08 -1.25 2.21 -11.54 -0.03 -1.27 16 6 H 0.14 1.41 6.43 -2.39 -0.02 1.40 16 7 C 0.13 2.72 5.05 86.38 0.44 3.15 16 8 N -0.72 -18.46 5.30 -465.94 -2.47 -20.93 16 9 C 0.56 21.11 7.77 86.80 0.67 21.79 16 10 O -0.58 -26.25 16.33 -3.87 -0.06 -26.31 16 11 C -0.11 -4.61 5.87 -20.13 -0.12 -4.73 16 12 C -0.19 -6.26 9.55 22.70 0.22 -6.04 16 13 C -0.08 -2.81 10.01 22.18 0.22 -2.58 16 14 C -0.23 -10.32 7.39 22.77 0.17 -10.15 16 15 C 0.07 3.39 5.14 -21.32 -0.11 3.29 16 16 C -0.49 -28.03 9.54 23.47 0.22 -27.81 16 17 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 18 C 0.05 2.53 5.34 85.26 0.46 2.99 16 19 N -0.84 -45.77 13.93 21.83 0.30 -45.46 16 20 Si 0.97 41.06 24.64 68.60 1.69 42.75 16 21 H -0.24 -9.41 6.57 99.48 0.65 -8.75 16 22 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 23 H -0.25 -10.95 7.07 99.48 0.70 -10.24 16 24 C -0.17 -8.50 9.34 23.01 0.21 -8.29 16 25 C 0.48 8.87 5.82 71.24 0.41 9.29 16 26 O -0.54 -13.67 16.78 21.94 0.37 -13.30 16 27 O -0.51 -6.63 13.00 -51.38 -0.67 -7.30 16 28 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.79 7.04 -2.39 -0.02 0.78 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.52 6.52 -2.39 -0.02 0.50 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.07 1.13 7.70 -2.39 -0.02 1.12 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.42 8.55 5.86 -92.71 -0.54 8.00 16 40 H 0.15 3.47 6.38 -2.91 -0.02 3.45 16 41 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 42 H 0.11 4.66 4.62 -2.91 -0.01 4.65 16 43 H 0.30 14.34 8.30 -92.70 -0.77 13.57 16 44 H 0.09 4.74 7.64 -2.91 -0.02 4.71 16 45 H 0.43 2.70 9.10 -74.06 -0.67 2.02 16 Total: -1.00 -73.02 369.48 3.09 -69.93 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: -0.25 Total: 25.10 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 4.17 Total: -24.48 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -2.17 Total: -66.39 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -0.36 Total: -46.91 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.69 Total: 42.75 kcal Total: -73.02 3.09 -69.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262813670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.721 kcal (2) G-P(sol) polarization free energy of solvation -73.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds