Wall clock time and date at job start Tue Mar 31 2020 12:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47101 * 2 1 4 4 C 1.53004 * 109.47122 * 240.00407 * 2 1 3 5 5 C 1.50699 * 109.47726 * 120.00299 * 2 1 3 6 6 O 1.20783 * 119.99381 * 359.97438 * 5 2 1 7 7 C 1.48967 * 120.00409 * 179.97438 * 5 2 1 8 8 O 1.21395 * 119.99777 * 359.97438 * 7 5 2 9 9 N 1.34770 * 119.99785 * 179.97438 * 7 5 2 10 10 C 1.39679 * 120.00158 * 185.27826 * 9 7 5 11 11 C 1.39006 * 120.05562 * 213.36184 * 10 9 7 12 12 C 1.38095 * 120.03374 * 180.02562 * 11 10 9 13 13 C 1.38230 * 120.13358 * 359.72575 * 12 11 10 14 14 C 1.38778 * 120.09844 * 0.54810 * 13 12 11 15 15 O 1.35896 * 120.01959 * 179.72401 * 14 13 12 16 16 C 1.42897 * 116.99797 * 359.72639 * 15 14 13 17 17 C 1.53003 * 109.47176 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47144 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00248 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00076 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99678 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00026 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46919 * 90.00782 * 22 20 18 24 24 H 1.48499 * 109.47028 * 210.00427 * 22 20 18 25 25 H 1.48496 * 109.47352 * 330.00627 * 22 20 18 26 26 C 1.38610 * 119.96188 * 359.44974 * 14 13 12 27 27 H 1.09007 * 109.47345 * 299.99710 * 1 2 3 28 28 H 1.09001 * 109.47611 * 59.99949 * 1 2 3 29 29 H 1.08999 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47352 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47322 * 300.00097 * 3 2 1 32 32 H 1.09005 * 109.47213 * 60.00251 * 3 2 1 33 33 H 1.08999 * 109.46587 * 299.99876 * 4 2 1 34 34 H 1.09001 * 109.47169 * 59.99372 * 4 2 1 35 35 H 1.08997 * 109.47089 * 179.97438 * 4 2 1 36 36 H 0.97005 * 120.00522 * 5.27910 * 9 7 5 37 37 H 1.08003 * 119.97943 * 359.97438 * 11 10 9 38 38 H 1.08004 * 119.93290 * 180.02562 * 12 11 10 39 39 H 1.07999 * 119.95041 * 180.27910 * 13 12 11 40 40 H 1.08998 * 109.47470 * 300.00519 * 16 15 14 41 41 H 1.09003 * 109.46907 * 60.00107 * 16 15 14 42 42 H 1.08996 * 109.47239 * 300.00231 * 17 16 15 43 43 H 1.09003 * 109.46945 * 60.00339 * 17 16 15 44 44 H 0.97000 * 119.99859 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.05942 * 180.24780 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2475 -1.1691 2.0256 7 6 3.4970 -0.8470 1.4658 8 8 4.2858 -0.3864 0.6662 9 7 3.9462 -1.4820 2.5664 10 6 5.3147 -1.5145 2.8443 11 6 5.8722 -2.6245 3.4683 12 6 7.2251 -2.6560 3.7432 13 6 8.0293 -1.5873 3.3941 14 6 7.4776 -0.4739 2.7760 15 8 8.2687 0.5782 2.4385 16 6 9.6582 0.4728 2.7550 17 6 10.3821 1.7425 2.3025 18 6 11.8473 1.6316 2.6368 19 1 12.2247 0.7440 3.1230 20 6 12.7065 2.6627 2.3210 21 7 12.2471 3.7432 1.7286 22 14 14.5229 2.5249 2.7348 23 1 15.2447 1.9054 1.5945 24 1 15.0756 3.8786 2.9939 25 1 14.6923 1.6811 3.9450 26 6 6.1201 -0.4380 2.4980 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7488 -1.2493 34 1 1.6765 -0.2073 -2.1393 35 1 3.1299 -0.7208 -1.2495 36 1 3.3192 -1.9164 3.1657 37 1 5.2467 -3.4624 3.7389 38 1 7.6566 -3.5195 4.2278 39 1 9.0878 -1.6170 3.6065 40 1 9.7774 0.3501 3.8314 41 1 10.0833 -0.3899 2.2418 42 1 10.2629 1.8646 1.2259 43 1 9.9571 2.6053 2.8153 44 1 12.8514 4.4688 1.5067 45 1 5.6898 0.4259 2.0135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265038157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:39 Heat of formation + Delta-G solvation = -93.137837 kcal Electronic energy + Delta-G solvation = -26020.261003 eV Core-core repulsion = 22196.157950 eV Total energy + Delta-G solvation = -3824.103053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.49486 -40.00368 -38.93708 -37.34273 -36.29289 -34.60405 -33.36108 -30.93532 -29.87310 -29.14145 -27.79744 -27.65201 -26.25969 -25.03212 -23.31651 -22.29154 -21.58577 -20.37041 -19.59904 -18.29543 -17.83410 -16.67739 -16.35657 -16.14433 -15.89625 -15.54863 -15.43874 -15.33629 -14.93096 -14.70785 -14.38757 -14.05683 -13.66304 -13.41409 -13.05943 -12.89010 -12.78254 -12.56551 -12.53575 -12.32900 -12.01759 -11.99688 -11.78383 -11.68364 -11.41817 -11.35813 -11.11748 -10.94130 -10.81408 -10.56409 -10.39055 -9.85524 -9.67448 -9.61608 -9.29972 -8.46020 -8.36124 -7.89076 -6.10090 -4.14847 0.46381 1.38561 1.57403 2.29242 2.63482 3.27536 3.33346 3.36026 3.56959 3.89260 3.92340 4.13918 4.41320 4.43019 4.45741 4.85870 4.92897 5.11943 5.20102 5.26312 5.27923 5.29486 5.35716 5.41776 5.46377 5.51970 5.56529 5.58458 5.70278 5.74122 5.90841 5.94873 6.00366 6.02829 6.13182 6.24925 6.43521 6.48932 6.54107 6.70265 6.87265 7.02017 7.50306 7.58573 7.64471 7.80283 8.04467 8.23673 8.90750 9.49421 11.01511 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018442 B = 0.002408 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.944415 B =11626.012522 C =12845.908579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.145 4.145 5 C 0.366 3.634 6 O -0.417 6.417 7 C 0.470 3.530 8 O -0.471 6.471 9 N -0.649 5.649 10 C 0.170 3.830 11 C -0.191 4.191 12 C -0.060 4.060 13 C -0.222 4.222 14 C 0.165 3.835 15 O -0.311 6.311 16 C 0.065 3.935 17 C 0.025 3.975 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.162 4.162 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.418 0.582 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.263 0.737 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.254 -11.817 -0.718 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 C -0.204 4.204 4 C -0.203 4.203 5 C 0.236 3.764 6 O -0.286 6.286 7 C 0.254 3.746 8 O -0.343 6.343 9 N -0.296 5.296 10 C 0.077 3.923 11 C -0.211 4.211 12 C -0.079 4.079 13 C -0.241 4.241 14 C 0.117 3.883 15 O -0.224 6.224 16 C -0.009 4.009 17 C -0.012 4.012 18 C -0.565 4.565 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.182 4.182 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.255 0.745 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.158 -11.328 -1.050 25.802 hybrid contribution 0.908 -0.421 0.644 1.190 sum -22.250 -11.749 -0.406 25.164 Atomic orbital electron populations 1.21791 0.91958 1.02821 1.02745 1.20974 0.97474 0.97601 0.93478 1.21954 1.03555 0.92089 1.02812 1.21940 1.03466 0.99648 0.95215 1.24914 0.87929 0.76486 0.87119 1.90413 1.58473 1.36136 1.43580 1.21110 0.91271 0.80177 0.82045 1.90818 1.56600 1.43814 1.43106 1.43318 1.06921 1.54105 1.25278 1.17280 0.82208 0.93981 0.98872 1.20650 0.95809 0.97274 1.07405 1.20681 0.92487 0.97576 0.97141 1.21435 1.01387 0.95120 1.06144 1.18923 0.90511 0.87219 0.91631 1.86193 1.22082 1.37719 1.76417 1.23372 0.75543 1.02788 0.99239 1.19131 0.93745 0.90372 0.97978 1.20964 0.92055 1.03177 1.40263 0.92348 1.24994 0.99148 0.95142 0.94922 1.69978 1.35437 1.06529 1.40781 0.86485 0.84627 0.77450 0.78808 1.20486 1.21052 1.19767 1.20241 0.91366 0.99540 1.07093 0.91906 0.91228 0.91978 0.89912 0.90847 0.92362 0.92506 0.90878 0.89984 0.74473 0.85906 0.85483 0.84866 0.92991 0.92986 0.95326 0.95373 0.92692 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 7.76 37.15 0.29 -0.63 16 2 C -0.09 -0.76 0.76 -155.66 -0.12 -0.88 16 3 C -0.15 -1.20 8.29 37.16 0.31 -0.89 16 4 C -0.15 -1.12 8.29 37.16 0.31 -0.81 16 5 C 0.37 3.58 6.02 -29.86 -0.18 3.40 16 6 O -0.42 -4.36 16.09 5.98 0.10 -4.26 16 7 C 0.47 5.47 7.28 -11.82 -0.09 5.39 16 8 O -0.47 -6.68 11.07 5.46 0.06 -6.62 16 9 N -0.65 -7.09 5.32 -10.43 -0.06 -7.15 16 10 C 0.17 2.27 6.27 -83.78 -0.53 1.74 16 11 C -0.19 -2.23 9.96 -39.35 -0.39 -2.62 16 12 C -0.06 -0.74 10.03 -39.64 -0.40 -1.14 16 13 C -0.22 -3.39 9.04 -39.38 -0.36 -3.75 16 14 C 0.17 2.95 6.68 -39.24 -0.26 2.68 16 15 O -0.31 -6.55 10.13 -19.41 -0.20 -6.75 16 16 C 0.06 1.39 4.68 37.16 0.17 1.56 16 17 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 18 C -0.53 -14.68 9.11 -34.44 -0.31 -14.99 16 19 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 22 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.16 -2.65 8.59 -39.23 -0.34 -2.98 16 27 H 0.06 0.44 8.10 -51.92 -0.42 0.02 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 30 H 0.08 0.84 6.43 -51.93 -0.33 0.51 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.78 6.42 -51.93 -0.33 0.45 16 36 H 0.42 3.47 8.29 -40.82 -0.34 3.13 16 37 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.13 1.98 6.29 -52.49 -0.33 1.65 16 40 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 41 H 0.05 1.06 7.65 -51.93 -0.40 0.66 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.14 2.41 6.42 -52.49 -0.34 2.07 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -31.72 374.86 -7.52 -39.24 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.66 Total: 1.27 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -2.14 Total: -11.81 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.68 Total: -32.97 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.04 Total: -17.63 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.72 -7.52 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265038157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.899 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds