Wall clock time and date at job start Tue Mar 31 2020 12:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47101 * 2 1 4 4 C 1.53004 * 109.47122 * 240.00407 * 2 1 3 5 5 C 1.50699 * 109.47726 * 120.00299 * 2 1 3 6 6 O 1.20783 * 119.99381 * 359.97438 * 5 2 1 7 7 C 1.48967 * 120.00409 * 179.97438 * 5 2 1 8 8 O 1.21395 * 119.99777 * 359.97438 * 7 5 2 9 9 N 1.34770 * 119.99785 * 179.97438 * 7 5 2 10 10 C 1.39679 * 120.00158 * 185.27826 * 9 7 5 11 11 C 1.39006 * 120.05562 * 213.36184 * 10 9 7 12 12 C 1.38095 * 120.03374 * 180.02562 * 11 10 9 13 13 C 1.38230 * 120.13358 * 359.72575 * 12 11 10 14 14 C 1.38778 * 120.09844 * 0.54810 * 13 12 11 15 15 O 1.35896 * 120.01959 * 179.72401 * 14 13 12 16 16 C 1.42897 * 116.99797 * 359.72639 * 15 14 13 17 17 C 1.53003 * 109.47176 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47144 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00248 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00076 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99678 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00026 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46919 * 90.00782 * 22 20 18 24 24 H 1.48499 * 109.47028 * 210.00427 * 22 20 18 25 25 H 1.48496 * 109.47352 * 330.00627 * 22 20 18 26 26 C 1.38610 * 119.96188 * 359.44974 * 14 13 12 27 27 H 1.09007 * 109.47345 * 299.99710 * 1 2 3 28 28 H 1.09001 * 109.47611 * 59.99949 * 1 2 3 29 29 H 1.08999 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47352 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47322 * 300.00097 * 3 2 1 32 32 H 1.09005 * 109.47213 * 60.00251 * 3 2 1 33 33 H 1.08999 * 109.46587 * 299.99876 * 4 2 1 34 34 H 1.09001 * 109.47169 * 59.99372 * 4 2 1 35 35 H 1.08997 * 109.47089 * 179.97438 * 4 2 1 36 36 H 0.97005 * 120.00522 * 5.27910 * 9 7 5 37 37 H 1.08003 * 119.97943 * 359.97438 * 11 10 9 38 38 H 1.08004 * 119.93290 * 180.02562 * 12 11 10 39 39 H 1.07999 * 119.95041 * 180.27910 * 13 12 11 40 40 H 1.08998 * 109.47470 * 300.00519 * 16 15 14 41 41 H 1.09003 * 109.46907 * 60.00107 * 16 15 14 42 42 H 1.08996 * 109.47239 * 300.00231 * 17 16 15 43 43 H 1.09003 * 109.46945 * 60.00339 * 17 16 15 44 44 H 0.97000 * 119.99859 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.05942 * 180.24780 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2475 -1.1691 2.0256 7 6 3.4970 -0.8470 1.4658 8 8 4.2858 -0.3864 0.6662 9 7 3.9462 -1.4820 2.5664 10 6 5.3147 -1.5145 2.8443 11 6 5.8722 -2.6245 3.4683 12 6 7.2251 -2.6560 3.7432 13 6 8.0293 -1.5873 3.3941 14 6 7.4776 -0.4739 2.7760 15 8 8.2687 0.5782 2.4385 16 6 9.6582 0.4728 2.7550 17 6 10.3821 1.7425 2.3025 18 6 11.8473 1.6316 2.6368 19 1 12.2247 0.7440 3.1230 20 6 12.7065 2.6627 2.3210 21 7 12.2471 3.7432 1.7286 22 14 14.5229 2.5249 2.7348 23 1 15.2447 1.9054 1.5945 24 1 15.0756 3.8786 2.9939 25 1 14.6923 1.6811 3.9450 26 6 6.1201 -0.4380 2.4980 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7488 -1.2493 34 1 1.6765 -0.2073 -2.1393 35 1 3.1299 -0.7208 -1.2495 36 1 3.3192 -1.9164 3.1657 37 1 5.2467 -3.4624 3.7389 38 1 7.6566 -3.5195 4.2278 39 1 9.0878 -1.6170 3.6065 40 1 9.7774 0.3501 3.8314 41 1 10.0833 -0.3899 2.2418 42 1 10.2629 1.8646 1.2259 43 1 9.9571 2.6053 2.8153 44 1 12.8514 4.4688 1.5067 45 1 5.6898 0.4259 2.0135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265038157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:38 Heat of formation + Delta-G solvation = -112.282456 kcal Electronic energy + Delta-G solvation = -26021.091176 eV Core-core repulsion = 22196.157950 eV Total energy + Delta-G solvation = -3824.933226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.40436 -41.13113 -40.05220 -38.54465 -37.06548 -35.72137 -35.34795 -32.62152 -31.20784 -30.43293 -28.41194 -28.29746 -27.22459 -26.85934 -24.43326 -23.62467 -22.91580 -21.71708 -20.51351 -19.53404 -18.74607 -18.38417 -17.51895 -17.20505 -16.97084 -16.91927 -16.71183 -16.60395 -16.37212 -15.85100 -15.52124 -14.75108 -14.62137 -14.55371 -14.36850 -14.30024 -14.12018 -13.62802 -13.40028 -13.28845 -13.12414 -13.07444 -12.79229 -12.75138 -12.68370 -12.61726 -12.52837 -12.15648 -11.97840 -11.81942 -11.79617 -11.58909 -11.41419 -11.30024 -10.62751 -10.51867 -9.51899 -9.09596 -8.26880 -6.40934 -0.43008 0.31541 0.43642 1.39445 1.41394 1.43565 1.54686 1.72220 2.23777 2.47039 2.76148 2.92611 3.07581 3.39359 3.78348 3.82301 3.86445 4.11591 4.15538 4.19453 4.20988 4.26728 4.38079 4.49390 4.59209 4.64280 4.69106 4.73289 4.80470 4.89138 4.90215 4.97095 5.09492 5.15239 5.19827 5.28417 5.29557 5.30034 5.37103 5.45358 5.46233 5.62113 5.67270 5.82935 6.06013 6.13115 6.52401 6.69304 6.74099 7.29346 8.86520 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018442 B = 0.002408 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.944415 B =11626.012522 C =12845.908579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.143 4.143 5 C 0.374 3.626 6 O -0.420 6.420 7 C 0.466 3.534 8 O -0.500 6.500 9 N -0.640 5.640 10 C 0.170 3.830 11 C -0.172 4.172 12 C -0.051 4.051 13 C -0.229 4.229 14 C 0.127 3.873 15 O -0.343 6.343 16 C 0.084 3.916 17 C 0.027 3.973 18 C -0.545 4.545 19 H 0.073 0.927 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.978 3.022 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.257 1.257 26 C -0.181 4.181 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.433 0.567 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.136 0.864 40 H 0.065 0.935 41 H 0.063 0.937 42 H -0.004 1.004 43 H -0.003 1.003 44 H 0.267 0.733 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.013 -14.629 0.381 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.094 4.094 3 C -0.203 4.203 4 C -0.200 4.200 5 C 0.244 3.756 6 O -0.290 6.290 7 C 0.251 3.749 8 O -0.374 6.374 9 N -0.288 5.288 10 C 0.076 3.924 11 C -0.191 4.191 12 C -0.069 4.069 13 C -0.248 4.248 14 C 0.081 3.919 15 O -0.257 6.257 16 C 0.010 3.990 17 C -0.010 4.010 18 C -0.582 4.582 19 H 0.092 0.908 20 C -0.199 4.199 21 N -0.572 5.572 22 Si 0.801 3.199 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.181 1.181 26 C -0.202 4.202 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.273 0.727 37 H 0.183 0.817 38 H 0.185 0.815 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.014 0.986 43 H 0.015 0.985 44 H 0.075 0.925 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -23.962 -14.176 0.073 27.841 hybrid contribution 0.985 0.401 0.297 1.104 sum -22.977 -13.775 0.370 26.792 Atomic orbital electron populations 1.21788 0.90314 1.03216 1.03574 1.21049 0.98602 0.97092 0.92673 1.21944 1.01921 0.92603 1.03854 1.21925 1.01969 1.00441 0.95689 1.24955 0.86628 0.76433 0.87632 1.90412 1.58109 1.36571 1.43882 1.21604 0.92124 0.79447 0.81752 1.90823 1.57551 1.44855 1.44210 1.43301 1.06324 1.53870 1.25334 1.17406 0.82960 0.93613 0.98437 1.21144 0.96086 0.97207 1.04712 1.21145 0.92455 0.97509 0.95774 1.21587 1.01996 0.95156 1.06062 1.19201 0.90706 0.87683 0.94344 1.86097 1.21761 1.40019 1.77838 1.22915 0.76138 1.00158 0.99790 1.18977 0.94541 0.91936 0.95564 1.21397 0.92696 1.03844 1.40287 0.90840 1.26083 1.04757 0.94554 0.94485 1.70133 1.37526 1.07551 1.41988 0.85257 0.77722 0.77723 0.79195 1.19546 1.20726 1.18108 1.20216 0.91442 1.00298 1.08240 0.92176 0.89352 0.91774 0.92449 0.89035 0.92132 0.91628 0.89127 0.92295 0.72714 0.81660 0.81461 0.84653 0.91661 0.91908 0.98606 0.98453 0.92451 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 7.76 71.98 0.56 -0.96 16 2 C -0.09 -1.43 0.76 -52.93 -0.04 -1.47 16 3 C -0.15 -2.39 8.29 71.98 0.60 -1.79 16 4 C -0.14 -2.09 8.29 71.98 0.60 -1.49 16 5 C 0.37 7.06 6.02 28.57 0.17 7.24 16 6 O -0.42 -8.18 16.09 -1.52 -0.02 -8.21 16 7 C 0.47 10.92 7.28 87.12 0.63 11.56 16 8 O -0.50 -14.99 11.07 -3.39 -0.04 -15.03 16 9 N -0.64 -13.30 5.32 -305.26 -1.62 -14.92 16 10 C 0.17 4.36 6.27 38.22 0.24 4.60 16 11 C -0.17 -3.40 9.96 22.42 0.22 -3.18 16 12 C -0.05 -1.08 10.03 22.23 0.22 -0.85 16 13 C -0.23 -6.78 9.04 22.40 0.20 -6.57 16 14 C 0.13 4.69 6.68 22.49 0.15 4.84 16 15 O -0.34 -15.40 10.13 -92.38 -0.94 -16.33 16 16 C 0.08 3.76 4.68 71.98 0.34 4.10 16 17 C 0.03 1.51 5.34 29.85 0.16 1.67 16 18 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 19 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 20 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 21 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 22 Si 0.98 43.71 29.54 68.60 2.03 45.74 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 26 C -0.18 -6.18 8.59 22.50 0.19 -5.98 16 27 H 0.06 0.74 8.10 -2.38 -0.02 0.72 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 30 H 0.06 1.25 6.43 -2.38 -0.02 1.24 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.16 6.42 -2.39 -0.02 1.14 16 36 H 0.43 6.24 8.29 -92.70 -0.77 5.47 16 37 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.14 3.87 6.29 -2.91 -0.02 3.86 16 40 H 0.07 2.69 7.67 -2.39 -0.02 2.67 16 41 H 0.06 2.62 7.65 -2.39 -0.02 2.60 16 42 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 43 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.12 4.44 6.42 -2.91 -0.02 4.42 16 Total: -1.00 -72.82 374.86 4.86 -67.95 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.23 Total: 16.74 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 4.94 Total: -18.64 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -1.34 Total: -72.22 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.00 Total: -39.57 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -72.82 4.86 -67.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265038157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.331 kcal (2) G-P(sol) polarization free energy of solvation -72.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds