Wall clock time and date at job start Tue Mar 31 2020 13:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47285 * 2 1 4 4 C 1.52997 * 109.47323 * 120.00246 * 2 1 3 5 5 H 1.08995 * 109.47040 * 299.99772 * 4 2 1 6 6 O 1.42907 * 109.46907 * 59.99804 * 4 2 1 7 7 C 1.53000 * 109.47320 * 179.97438 * 4 2 1 8 8 N 1.46495 * 109.47615 * 180.02562 * 7 4 2 9 9 C 1.34770 * 120.00491 * 179.97438 * 8 7 4 10 10 O 1.21722 * 119.99697 * 0.02562 * 9 8 7 11 11 C 1.46250 * 120.00046 * 179.97438 * 9 8 7 12 12 C 1.35031 * 119.99722 * 180.02562 * 11 9 8 13 13 C 1.46959 * 119.99896 * 180.27394 * 12 11 9 14 14 C 1.40027 * 120.10017 * 359.45143 * 13 12 11 15 15 C 1.37601 * 119.89863 * 179.78912 * 14 13 12 16 16 C 1.39178 * 120.09610 * 0.48118 * 15 14 13 17 17 O 1.35575 * 119.89259 * 179.76441 * 16 15 14 18 18 C 1.34788 * 116.99533 * 174.42515 * 17 16 15 19 19 H 1.08001 * 120.00124 * 5.05799 * 18 17 16 20 20 C 1.38720 * 119.99795 * 185.06035 * 18 17 16 21 21 N 1.31507 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47362 * 59.99753 * 22 20 18 24 24 H 1.48503 * 109.47455 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47353 * 299.99834 * 22 20 18 26 26 C 1.39170 * 120.20621 * 359.74800 * 16 15 14 27 27 C 1.37600 * 120.10262 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.46717 * 300.00156 * 1 2 3 29 29 H 1.08994 * 109.47426 * 59.99784 * 1 2 3 30 30 H 1.08999 * 109.47341 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46551 * 240.00528 * 2 1 3 32 32 H 1.09001 * 109.47375 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47172 * 300.00254 * 3 2 1 34 34 H 1.08995 * 109.47067 * 60.00235 * 3 2 1 35 35 H 0.96700 * 113.99840 * 60.00439 * 6 4 2 36 36 H 1.08999 * 109.47018 * 59.99922 * 7 4 2 37 37 H 1.09009 * 109.46876 * 300.00480 * 7 4 2 38 38 H 0.96999 * 119.99771 * 359.97438 * 8 7 4 39 39 H 1.07990 * 120.00180 * 359.97438 * 11 9 8 40 40 H 1.08000 * 120.00105 * 359.97438 * 12 11 9 41 41 H 1.08005 * 120.04944 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.95289 * 180.22906 * 15 14 13 43 43 H 0.97008 * 119.99947 * 180.02562 * 21 20 18 44 44 H 1.08006 * 119.94848 * 179.97438 * 26 16 15 45 45 H 1.07997 * 120.05056 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1391 6 8 1.5636 -2.0686 1.2491 7 6 3.5700 -0.7218 1.2488 8 7 4.0585 -1.4130 2.4446 9 6 5.3835 -1.5371 2.6573 10 8 6.1744 -1.0745 1.8560 11 6 5.8710 -2.2266 3.8513 12 6 7.1986 -2.3505 4.0646 13 6 7.6885 -3.0487 5.2614 14 6 6.7805 -3.5761 6.1878 15 6 7.2438 -4.2328 7.3047 16 6 8.6126 -4.3643 7.5195 17 8 9.0645 -5.0080 8.6238 18 6 10.3949 -5.2034 8.7166 19 1 11.0557 -4.7819 7.9737 20 6 10.9152 -5.9461 9.7664 21 7 10.1105 -6.4590 10.6713 22 14 12.7588 -6.2175 9.8947 23 1 13.4457 -4.9058 10.0081 24 1 13.0561 -7.0370 11.0969 25 1 13.2406 -6.9252 8.6812 26 6 9.5188 -3.8375 6.6040 27 6 9.0647 -3.1833 5.4819 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.8490 -2.5866 0.4840 36 1 3.9337 0.3057 1.2486 37 1 3.9330 -1.2359 0.3587 38 1 3.4282 -1.7813 3.0833 39 1 5.1693 -2.6360 4.5629 40 1 7.9004 -1.9408 3.3533 41 1 5.7182 -3.4703 6.0243 42 1 6.5442 -4.6432 8.0178 43 1 10.4744 -6.9780 11.4056 44 1 10.5801 -3.9416 6.7750 45 1 9.7686 -2.7752 4.7718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268653651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:49 Heat of formation + Delta-G solvation = -114.634793 kcal Electronic energy + Delta-G solvation = -24825.364558 eV Core-core repulsion = 21000.329327 eV Total energy + Delta-G solvation = -3825.035231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.96146 -40.69017 -39.28415 -38.46578 -35.30124 -35.12860 -34.73155 -33.98674 -31.96888 -30.40213 -29.10534 -27.78270 -27.46024 -25.12660 -23.87423 -23.45733 -22.11387 -21.45533 -20.61691 -19.76003 -18.86002 -18.29422 -17.74248 -17.12212 -16.54653 -16.46491 -16.22648 -15.98073 -15.76272 -15.61421 -15.38475 -15.13972 -14.89143 -14.64316 -14.50503 -14.10329 -13.69789 -13.59123 -13.41357 -13.25390 -13.16250 -13.08946 -12.85346 -12.67584 -12.57228 -12.30023 -12.23056 -12.14120 -11.82941 -11.51168 -11.21872 -11.15138 -11.10700 -10.74362 -10.58016 -10.06840 -9.89267 -8.67923 -8.51753 -6.18127 -0.24649 0.58515 1.13749 1.36060 1.47573 1.51857 2.15810 2.24557 2.36963 2.86680 3.17918 3.42465 3.45127 3.62323 3.76661 3.91694 3.95924 4.00500 4.08824 4.25197 4.30308 4.35843 4.38949 4.47904 4.62241 4.66374 4.73720 4.82276 4.89768 4.94670 4.99983 5.02979 5.07533 5.19590 5.21881 5.28126 5.33513 5.40211 5.43451 5.49184 5.58965 5.63857 5.81543 5.97334 6.10557 6.58904 6.77364 6.92357 7.27949 7.69304 8.69980 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.040586 B = 0.001704 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.723572 B =16425.163944 C =16929.520186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C -0.154 4.154 4 C 0.111 3.889 5 H 0.106 0.894 6 O -0.567 6.567 7 C 0.085 3.915 8 N -0.711 5.711 9 C 0.549 3.451 10 O -0.596 6.596 11 C -0.247 4.247 12 C 0.016 3.984 13 C -0.171 4.171 14 C -0.038 4.038 15 C -0.207 4.207 16 C 0.129 3.871 17 O -0.219 6.219 18 C -0.419 4.419 19 H 0.106 0.894 20 C -0.018 4.018 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.257 1.257 24 H -0.271 1.271 25 H -0.257 1.257 26 C -0.249 4.249 27 C -0.040 4.040 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.388 0.612 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.416 0.584 39 H 0.150 0.850 40 H 0.125 0.875 41 H 0.159 0.841 42 H 0.123 0.877 43 H 0.275 0.725 44 H 0.125 0.875 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.344 12.059 -20.368 28.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.139 4.139 3 C -0.211 4.211 4 C 0.052 3.948 5 H 0.124 0.876 6 O -0.374 6.374 7 C -0.039 4.039 8 N -0.362 5.362 9 C 0.340 3.660 10 O -0.480 6.480 11 C -0.267 4.267 12 C -0.004 4.004 13 C -0.172 4.172 14 C -0.056 4.056 15 C -0.226 4.226 16 C 0.077 3.923 17 O -0.125 6.125 18 C -0.494 4.494 19 H 0.123 0.877 20 C -0.217 4.217 21 N -0.550 5.550 22 Si 0.837 3.163 23 H -0.181 1.181 24 H -0.196 1.196 25 H -0.182 1.182 26 C -0.268 4.268 27 C -0.058 4.058 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.237 0.763 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.252 0.748 39 H 0.167 0.833 40 H 0.143 0.857 41 H 0.177 0.823 42 H 0.141 0.859 43 H 0.084 0.916 44 H 0.143 0.857 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.224 12.355 -19.987 28.554 hybrid contribution 0.945 -0.598 0.228 1.141 sum -15.280 11.757 -19.758 27.606 Atomic orbital electron populations 1.21730 0.93876 1.02231 1.01972 1.21711 0.97203 0.97149 0.97808 1.21910 1.01134 0.95286 1.02760 1.22149 0.89526 0.83503 0.99662 0.87603 1.86575 1.76812 1.23257 1.50756 1.22219 0.95717 0.97984 0.87936 1.45674 1.06371 1.58330 1.25842 1.18528 0.82536 0.78900 0.86042 1.90773 1.56599 1.51668 1.48964 1.22767 0.96892 1.07674 0.99379 1.22171 0.95967 0.89757 0.92525 1.18785 0.93120 1.07563 0.97706 1.21287 1.00369 0.92976 0.90943 1.20421 0.91918 1.08498 1.01789 1.20190 0.94486 0.91039 0.86555 1.83888 1.26347 1.66372 1.35850 1.21871 0.79701 1.34930 1.12942 0.87703 1.26608 1.06039 0.94815 0.94193 1.70145 1.38020 1.33494 1.13327 0.84647 0.73516 0.79333 0.78764 1.18110 1.19587 1.18151 1.21205 1.00092 1.07477 0.98043 1.21318 0.95270 0.94137 0.95085 0.92792 0.92056 0.92312 0.90104 0.92572 0.91626 0.92140 0.76284 0.90850 0.91753 0.74758 0.83264 0.85704 0.82341 0.85944 0.91596 0.85699 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.05 71.98 0.65 -0.49 16 2 C -0.12 -0.96 2.69 -10.79 -0.03 -0.99 16 3 C -0.15 -1.27 8.84 71.98 0.64 -0.64 16 4 C 0.11 1.10 2.64 30.59 0.08 1.18 16 5 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 6 O -0.57 -6.18 12.41 -148.98 -1.85 -8.03 16 7 C 0.09 1.22 4.98 86.38 0.43 1.65 16 8 N -0.71 -12.19 5.44 -467.51 -2.54 -14.74 16 9 C 0.55 13.50 7.74 86.33 0.67 14.16 16 10 O -0.60 -19.27 16.23 -4.42 -0.07 -19.34 16 11 C -0.25 -5.71 9.41 23.62 0.22 -5.49 16 12 C 0.02 0.42 9.45 23.82 0.23 0.65 16 13 C -0.17 -5.36 5.87 -20.13 -0.12 -5.47 16 14 C -0.04 -1.20 9.40 22.55 0.21 -0.99 16 15 C -0.21 -8.31 9.97 22.34 0.22 -8.09 16 16 C 0.13 6.20 6.66 22.72 0.15 6.35 16 17 O -0.22 -12.76 9.74 -20.39 -0.20 -12.96 16 18 C -0.42 -23.62 9.48 67.94 0.64 -22.98 16 19 H 0.11 5.39 5.18 -2.91 -0.02 5.37 16 20 C -0.02 -0.98 5.49 84.86 0.47 -0.51 16 21 N -0.91 -54.41 13.67 21.62 0.30 -54.12 16 22 Si 1.02 41.50 29.55 68.60 2.03 43.52 16 23 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 24 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 25 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 26 C -0.25 -10.48 9.14 22.34 0.20 -10.27 16 27 C -0.04 -1.37 9.78 22.55 0.22 -1.15 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.53 7.68 -2.39 -0.02 0.52 16 31 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.54 6.43 -2.39 -0.02 0.53 16 33 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.39 2.27 9.04 -74.06 -0.67 1.60 16 36 H 0.07 1.17 6.43 -2.39 -0.02 1.15 16 37 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.42 5.46 8.33 -92.71 -0.77 4.69 16 39 H 0.15 2.69 6.06 -2.92 -0.02 2.67 16 40 H 0.13 3.41 7.52 -2.91 -0.02 3.38 16 41 H 0.16 3.66 6.16 -2.91 -0.02 3.64 16 42 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 43 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 44 H 0.13 5.30 5.62 -2.91 -0.02 5.28 16 45 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -72.95 378.84 2.14 -70.82 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: -0.41 Total: 27.91 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 4.89 Total: -33.07 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -2.25 Total: -68.85 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -2.12 Total: -40.33 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -72.95 2.14 -70.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268653651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.818 kcal (2) G-P(sol) polarization free energy of solvation -72.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds