Wall clock time and date at job start Tue Mar 31 2020 12:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35665 * 116.99631 * 2 1 4 4 C 1.39085 * 119.88202 * 179.97438 * 3 2 1 5 5 C 1.37114 * 120.11552 * 180.02562 * 4 3 2 6 6 C 1.40041 * 119.88309 * 359.96799 * 5 4 3 7 7 C 1.46857 * 120.11332 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00077 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99670 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.46800 * 299.99957 * 10 9 7 12 12 C 1.53005 * 109.47274 * 59.99521 * 10 9 7 13 13 C 1.52996 * 109.47340 * 180.02562 * 10 9 7 14 14 C 1.50699 * 109.47232 * 179.97438 * 13 10 9 15 15 O 1.21297 * 119.99980 * 359.97438 * 14 13 10 16 16 N 1.34779 * 120.00037 * 179.97438 * 14 13 10 17 17 C 1.37088 * 120.00089 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00319 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00233 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99808 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00301 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46950 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47074 * 120.00025 * 21 19 17 24 24 H 1.48505 * 109.46997 * 240.00019 * 21 19 17 25 25 C 1.40043 * 119.77346 * 0.28608 * 6 5 4 26 26 C 1.37117 * 119.87858 * 359.46002 * 25 6 5 27 27 H 1.09002 * 109.46947 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47999 * 300.00560 * 1 2 3 29 29 H 1.09007 * 109.46983 * 60.00805 * 1 2 3 30 30 H 1.07997 * 119.93811 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.06048 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47318 * 299.99428 * 9 7 6 33 33 H 1.09000 * 109.47161 * 60.00058 * 9 7 6 34 34 H 1.09002 * 109.47288 * 60.00162 * 11 10 9 35 35 H 1.09001 * 109.46630 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47188 * 300.00076 * 11 10 9 37 37 H 1.08996 * 109.46524 * 60.00319 * 12 10 9 38 38 H 1.09001 * 109.46962 * 180.02562 * 12 10 9 39 39 H 1.08992 * 109.47199 * 300.00708 * 12 10 9 40 40 H 1.09004 * 109.46785 * 299.99692 * 13 10 9 41 41 H 1.09000 * 109.47196 * 59.99588 * 13 10 9 42 42 H 0.97004 * 119.99467 * 0.02562 * 16 14 13 43 43 H 0.97002 * 120.00022 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.05842 * 179.70195 * 25 6 5 45 45 H 1.07998 * 119.94402 * 180.25965 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4339 1.2788 0.0005 5 6 4.0613 2.4980 0.0011 6 6 3.3009 3.6740 0.0004 7 6 3.9676 4.9825 0.0004 8 8 5.1788 5.0460 0.0005 9 6 3.1467 6.2464 0.0002 10 6 4.0787 7.4598 -0.0004 11 6 4.9617 7.4252 1.2487 12 6 4.9611 7.4245 -1.2498 13 6 3.2454 8.7430 0.0001 14 6 4.1634 9.9381 0.0002 15 8 5.3659 9.7792 0.0003 16 7 3.6482 11.1835 0.0000 17 6 4.4833 12.2707 0.0006 18 1 5.5540 12.1293 0.0007 19 6 3.9522 13.5547 0.0010 20 7 2.6494 13.7269 0.0004 21 14 5.0901 15.0362 0.0011 22 1 6.5020 14.5759 0.0012 23 1 4.8361 15.8554 -1.2112 24 1 4.8367 15.8549 1.2138 25 6 1.9025 3.5980 0.0052 26 6 1.2850 2.3737 -0.0006 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 4.0193 0.3713 0.0005 31 1 5.1399 2.5514 0.0019 32 1 2.5180 6.2713 -0.8898 33 1 2.5178 6.2713 0.8902 34 1 5.5554 6.5111 1.2488 35 1 5.6259 8.2895 1.2480 36 1 4.3331 7.4503 2.1389 37 1 4.3320 7.4491 -2.1396 38 1 5.6254 8.2888 -1.2500 39 1 5.5547 6.5104 -1.2497 40 1 2.6161 8.7678 -0.8895 41 1 2.6171 8.7678 0.8905 42 1 2.6865 11.3105 0.0003 43 1 2.2786 14.6233 0.0010 44 1 1.3116 4.5020 0.0096 45 1 0.2067 2.3139 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273598104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:53 Heat of formation + Delta-G solvation = -90.153982 kcal Electronic energy + Delta-G solvation = -26187.829460 eV Core-core repulsion = 22363.855797 eV Total energy + Delta-G solvation = -3823.973663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.77874 -39.89586 -38.49294 -37.37451 -35.48800 -33.73423 -31.88144 -31.21803 -30.92377 -28.73665 -27.77403 -27.13288 -26.56673 -24.50002 -23.65936 -22.72074 -20.51626 -19.31249 -18.66767 -18.38613 -17.57758 -16.68322 -16.54707 -16.23060 -15.81816 -15.19057 -15.06121 -14.68060 -14.43841 -14.39414 -14.08876 -13.92265 -13.75050 -13.34331 -13.33358 -12.94875 -12.93252 -12.46761 -12.31539 -11.93749 -11.60410 -11.52399 -11.39814 -11.22113 -11.18684 -10.78306 -10.69662 -10.64161 -10.44804 -10.27924 -10.18381 -10.12152 -9.46983 -9.37509 -9.22923 -8.58455 -8.05167 -7.89127 -6.38350 -3.78414 0.50471 1.01349 2.34715 2.77774 3.18379 3.28734 3.36239 3.52366 3.97322 3.98011 4.22109 4.31529 4.45474 4.62344 4.67451 4.89701 4.91192 4.99496 5.01666 5.11566 5.19755 5.26287 5.32277 5.45323 5.55559 5.65059 5.76174 5.82408 5.83778 5.91746 5.96546 6.15257 6.18744 6.29976 6.31448 6.42904 6.58128 6.64226 6.67388 6.87591 6.90450 7.21824 7.25604 7.59267 7.71509 8.11580 8.67257 9.22857 9.60478 10.13100 10.79565 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.034340 B = 0.002174 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.180221 B =12879.269363 C =13492.778937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.153 3.847 4 C -0.166 4.166 5 C -0.023 4.023 6 C -0.203 4.203 7 C 0.397 3.603 8 O -0.436 6.436 9 C -0.159 4.159 10 C -0.026 4.026 11 C -0.161 4.161 12 C -0.160 4.160 13 C -0.125 4.125 14 C 0.445 3.555 15 O -0.582 6.582 16 N -0.566 5.566 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.020 3.980 20 N -0.903 5.903 21 Si 0.928 3.072 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.031 4.031 26 C -0.223 4.223 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.392 0.608 43 H 0.270 0.730 44 H 0.137 0.863 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.469 -25.121 0.006 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.227 6.227 3 C 0.107 3.893 4 C -0.184 4.184 5 C -0.042 4.042 6 C -0.204 4.204 7 C 0.275 3.725 8 O -0.312 6.312 9 C -0.196 4.196 10 C -0.026 4.026 11 C -0.217 4.217 12 C -0.217 4.217 13 C -0.165 4.165 14 C 0.232 3.768 15 O -0.468 6.468 16 N -0.201 5.201 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.181 4.181 20 N -0.545 5.545 21 Si 0.755 3.245 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.050 4.050 26 C -0.241 4.241 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.155 0.845 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.061 -25.197 0.005 26.167 hybrid contribution -0.831 0.986 0.002 1.290 sum -7.892 -24.210 0.007 25.464 Atomic orbital electron populations 1.23136 0.77913 1.04255 1.01732 1.86035 1.21836 1.27037 1.87833 1.19401 0.92462 0.84226 0.93205 1.20298 0.91244 0.98922 1.07978 1.21149 1.00763 0.90417 0.91837 1.20609 0.94249 0.95438 1.10134 1.22299 0.89295 0.89357 0.71596 1.90453 1.16381 1.89038 1.35281 1.22183 0.99658 0.93947 1.03857 1.19952 0.94137 0.90515 0.98030 1.22277 1.00333 1.04769 0.94353 1.22270 1.00330 1.04758 0.94353 1.21598 0.98340 0.94270 1.02318 1.19865 0.89149 0.84038 0.83790 1.90387 1.15590 1.85192 1.55599 1.41952 1.09482 1.04445 1.64255 1.19765 0.92099 0.83673 1.47146 0.87871 1.25258 0.96264 0.99065 0.97519 1.69624 1.10472 1.23373 1.50992 0.85823 0.80240 0.80777 0.77641 1.19239 1.20825 1.20831 1.21179 0.93494 0.97690 0.92596 1.21108 1.00387 0.92199 1.10446 0.88016 0.92293 0.92287 0.84673 0.84119 0.88745 0.88742 0.91786 0.88999 0.94866 0.94864 0.89013 0.91785 0.90736 0.90737 0.77531 0.92020 0.84526 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.80 101.05 0.99 1.10 16 2 O -0.31 -2.58 10.48 -18.70 -0.20 -2.77 16 3 C 0.15 1.37 6.70 -38.96 -0.26 1.11 16 4 C -0.17 -1.53 9.95 -39.68 -0.39 -1.93 16 5 C -0.02 -0.24 9.57 -39.31 -0.38 -0.62 16 6 C -0.20 -2.19 5.87 -105.06 -0.62 -2.81 16 7 C 0.40 5.11 6.52 -30.82 -0.20 4.91 16 8 O -0.44 -6.90 11.33 5.55 0.06 -6.83 16 9 C -0.16 -1.92 3.37 -27.88 -0.09 -2.02 16 10 C -0.03 -0.42 0.51 -154.50 -0.08 -0.50 16 11 C -0.16 -2.88 7.88 37.16 0.29 -2.59 16 12 C -0.16 -2.88 7.88 37.16 0.29 -2.59 16 13 C -0.12 -2.17 4.77 -27.89 -0.13 -2.30 16 14 C 0.44 10.34 7.19 -10.99 -0.08 10.26 16 15 O -0.58 -15.13 10.92 5.54 0.06 -15.07 16 16 N -0.57 -14.35 5.29 -10.97 -0.06 -14.41 16 17 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 18 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 19 C 0.02 0.54 5.50 -17.47 -0.10 0.45 16 20 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 21 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.03 -0.27 9.44 -39.31 -0.37 -0.64 16 26 C -0.22 -1.76 8.99 -39.68 -0.36 -2.11 16 27 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 29 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 30 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.14 1.41 7.64 -52.49 -0.40 1.01 16 32 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 33 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.06 1.14 5.51 -51.93 -0.29 0.85 16 35 H 0.09 1.98 5.51 -51.93 -0.29 1.69 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.97 5.52 -51.93 -0.29 1.69 16 39 H 0.06 1.14 5.51 -51.93 -0.29 0.85 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.14 0.89 7.04 -52.49 -0.37 0.52 16 45 H 0.13 0.72 6.27 -52.49 -0.33 0.39 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -32.60 362.16 -6.85 -39.45 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -6.25 Total: 10.72 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -1.63 Total: -8.74 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.67 Total: -38.43 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.07 Total: -24.68 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.60 -6.85 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273598104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.708 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds