Wall clock time and date at job start Tue Mar 31 2020 12:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35665 * 116.99631 * 2 1 4 4 C 1.39085 * 119.88202 * 179.97438 * 3 2 1 5 5 C 1.37114 * 120.11552 * 180.02562 * 4 3 2 6 6 C 1.40041 * 119.88309 * 359.96799 * 5 4 3 7 7 C 1.46857 * 120.11332 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00077 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99670 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.46800 * 299.99957 * 10 9 7 12 12 C 1.53005 * 109.47274 * 59.99521 * 10 9 7 13 13 C 1.52996 * 109.47340 * 180.02562 * 10 9 7 14 14 C 1.50699 * 109.47232 * 179.97438 * 13 10 9 15 15 O 1.21297 * 119.99980 * 359.97438 * 14 13 10 16 16 N 1.34779 * 120.00037 * 179.97438 * 14 13 10 17 17 C 1.37088 * 120.00089 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00319 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00233 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99808 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00301 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46950 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47074 * 120.00025 * 21 19 17 24 24 H 1.48505 * 109.46997 * 240.00019 * 21 19 17 25 25 C 1.40043 * 119.77346 * 0.28608 * 6 5 4 26 26 C 1.37117 * 119.87858 * 359.46002 * 25 6 5 27 27 H 1.09002 * 109.46947 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47999 * 300.00560 * 1 2 3 29 29 H 1.09007 * 109.46983 * 60.00805 * 1 2 3 30 30 H 1.07997 * 119.93811 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.06048 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47318 * 299.99428 * 9 7 6 33 33 H 1.09000 * 109.47161 * 60.00058 * 9 7 6 34 34 H 1.09002 * 109.47288 * 60.00162 * 11 10 9 35 35 H 1.09001 * 109.46630 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47188 * 300.00076 * 11 10 9 37 37 H 1.08996 * 109.46524 * 60.00319 * 12 10 9 38 38 H 1.09001 * 109.46962 * 180.02562 * 12 10 9 39 39 H 1.08992 * 109.47199 * 300.00708 * 12 10 9 40 40 H 1.09004 * 109.46785 * 299.99692 * 13 10 9 41 41 H 1.09000 * 109.47196 * 59.99588 * 13 10 9 42 42 H 0.97004 * 119.99467 * 0.02562 * 16 14 13 43 43 H 0.97002 * 120.00022 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.05842 * 179.70195 * 25 6 5 45 45 H 1.07998 * 119.94402 * 180.25965 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4339 1.2788 0.0005 5 6 4.0613 2.4980 0.0011 6 6 3.3009 3.6740 0.0004 7 6 3.9676 4.9825 0.0004 8 8 5.1788 5.0460 0.0005 9 6 3.1467 6.2464 0.0002 10 6 4.0787 7.4598 -0.0004 11 6 4.9617 7.4252 1.2487 12 6 4.9611 7.4245 -1.2498 13 6 3.2454 8.7430 0.0001 14 6 4.1634 9.9381 0.0002 15 8 5.3659 9.7792 0.0003 16 7 3.6482 11.1835 0.0000 17 6 4.4833 12.2707 0.0006 18 1 5.5540 12.1293 0.0007 19 6 3.9522 13.5547 0.0010 20 7 2.6494 13.7269 0.0004 21 14 5.0901 15.0362 0.0011 22 1 6.5020 14.5759 0.0012 23 1 4.8361 15.8554 -1.2112 24 1 4.8367 15.8549 1.2138 25 6 1.9025 3.5980 0.0052 26 6 1.2850 2.3737 -0.0006 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 4.0193 0.3713 0.0005 31 1 5.1399 2.5514 0.0019 32 1 2.5180 6.2713 -0.8898 33 1 2.5178 6.2713 0.8902 34 1 5.5554 6.5111 1.2488 35 1 5.6259 8.2895 1.2480 36 1 4.3331 7.4503 2.1389 37 1 4.3320 7.4491 -2.1396 38 1 5.6254 8.2888 -1.2500 39 1 5.5547 6.5104 -1.2497 40 1 2.6161 8.7678 -0.8895 41 1 2.6171 8.7678 0.8905 42 1 2.6865 11.3105 0.0003 43 1 2.2786 14.6233 0.0010 44 1 1.3116 4.5020 0.0096 45 1 0.2067 2.3139 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273598104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:52 Heat of formation + Delta-G solvation = -110.370170 kcal Electronic energy + Delta-G solvation = -26188.706100 eV Core-core repulsion = 22363.855797 eV Total energy + Delta-G solvation = -3824.850303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.59946 -40.86948 -40.01229 -38.13728 -36.94516 -35.65020 -33.23922 -32.58791 -31.64034 -29.74419 -28.99047 -28.01994 -27.88660 -26.44466 -24.40777 -23.42431 -21.76867 -20.71166 -20.03277 -19.32817 -19.15932 -17.66756 -17.58653 -17.12714 -16.70999 -16.48730 -16.08047 -16.01009 -15.94982 -15.68854 -15.40324 -14.99547 -14.78191 -14.70659 -14.44724 -13.83433 -13.66090 -13.57920 -13.57332 -13.21507 -13.04013 -12.78199 -12.71520 -12.40361 -12.38330 -12.19106 -12.12332 -11.96961 -11.90034 -11.81572 -11.69573 -11.44809 -11.31857 -10.37498 -10.11741 -9.91018 -9.85373 -9.25412 -8.43510 -5.90565 -0.24507 0.37368 1.36609 1.41259 1.51461 1.55199 2.14333 2.29260 2.31517 2.81854 3.02523 3.24779 3.41421 3.74546 3.88984 3.93428 4.05259 4.12672 4.18484 4.34307 4.38462 4.43153 4.47158 4.55737 4.69025 4.72271 4.72439 4.77192 4.82276 4.83840 4.95529 5.02228 5.11831 5.13876 5.25212 5.25405 5.29529 5.41838 5.45094 5.54224 5.65872 5.69463 5.78766 6.07788 6.35216 6.66693 6.76945 7.19216 7.64694 8.22657 8.74280 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.034340 B = 0.002174 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.180221 B =12879.269363 C =13492.778937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.330 6.330 3 C 0.151 3.849 4 C -0.178 4.178 5 C -0.035 4.035 6 C -0.223 4.223 7 C 0.399 3.601 8 O -0.481 6.481 9 C -0.153 4.153 10 C -0.024 4.024 11 C -0.155 4.155 12 C -0.155 4.155 13 C -0.115 4.115 14 C 0.440 3.560 15 O -0.614 6.614 16 N -0.579 5.579 17 C -0.329 4.329 18 H 0.076 0.924 19 C -0.016 4.016 20 N -0.921 5.921 21 Si 0.989 3.011 22 H -0.276 1.276 23 H -0.271 1.271 24 H -0.271 1.271 25 C -0.024 4.024 26 C -0.221 4.221 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.395 0.605 43 H 0.276 0.724 44 H 0.166 0.834 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.745 -26.196 0.007 28.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.243 6.243 3 C 0.105 3.895 4 C -0.197 4.197 5 C -0.053 4.053 6 C -0.224 4.224 7 C 0.280 3.720 8 O -0.359 6.359 9 C -0.189 4.189 10 C -0.025 4.025 11 C -0.212 4.212 12 C -0.212 4.212 13 C -0.155 4.155 14 C 0.229 3.771 15 O -0.501 6.501 16 N -0.216 5.216 17 C -0.458 4.458 18 H 0.094 0.906 19 C -0.215 4.215 20 N -0.563 5.563 21 Si 0.813 3.187 22 H -0.201 1.201 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.042 4.042 26 C -0.239 4.239 27 H 0.137 0.863 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.160 0.840 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.229 0.771 43 H 0.085 0.915 44 H 0.183 0.817 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.374 -26.292 0.007 28.265 hybrid contribution 0.168 1.152 0.002 1.164 sum -10.205 -25.140 0.009 27.133 Atomic orbital electron populations 1.23454 0.75845 1.05897 1.02829 1.86026 1.24017 1.26813 1.87483 1.19579 0.92454 0.85109 0.92372 1.20407 0.92068 0.98792 1.08386 1.21156 1.00544 0.91115 0.92517 1.20508 0.95374 0.94216 1.12333 1.22620 0.88802 0.90530 0.70060 1.90451 1.18113 1.89549 1.37788 1.22179 0.98952 0.90920 1.06898 1.19922 0.94358 0.92267 0.95951 1.22166 1.00295 1.02489 0.96256 1.22159 1.00291 1.02480 0.96257 1.21624 0.97567 0.91313 1.04979 1.21028 0.89652 0.84974 0.81443 1.90409 1.17717 1.85878 1.56097 1.42028 1.09336 1.04718 1.65533 1.19672 0.91448 0.85425 1.49292 0.90584 1.25981 0.97794 1.01001 0.96719 1.69676 1.11376 1.24284 1.50966 0.84926 0.77895 0.77579 0.78266 1.20078 1.19669 1.19675 1.21473 0.92464 0.99140 0.91081 1.21431 1.01826 0.91378 1.09260 0.86342 0.91126 0.91121 0.84035 0.85165 0.85587 0.85576 0.92097 0.93360 0.93227 0.93222 0.93373 0.92095 0.87891 0.87894 0.77070 0.91463 0.81704 0.81953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.80 113.37 1.11 1.19 16 2 O -0.33 -4.65 10.48 -89.82 -0.94 -5.59 16 3 C 0.15 2.37 6.70 22.68 0.15 2.52 16 4 C -0.18 -3.15 9.95 22.21 0.22 -2.93 16 5 C -0.04 -0.71 9.57 22.44 0.21 -0.50 16 6 C -0.22 -4.40 5.87 -20.15 -0.12 -4.52 16 7 C 0.40 9.64 6.52 27.95 0.18 9.82 16 8 O -0.48 -15.40 11.33 -3.07 -0.03 -15.43 16 9 C -0.15 -3.13 3.37 29.85 0.10 -3.03 16 10 C -0.02 -0.76 0.51 -52.18 -0.03 -0.79 16 11 C -0.16 -5.60 7.88 71.98 0.57 -5.04 16 12 C -0.15 -5.59 7.88 71.98 0.57 -5.03 16 13 C -0.11 -3.74 4.77 29.85 0.14 -3.60 16 14 C 0.44 20.69 7.19 87.66 0.63 21.32 16 15 O -0.61 -33.41 10.92 -3.08 -0.03 -33.44 16 16 N -0.58 -29.77 5.29 -306.99 -1.62 -31.39 16 17 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 18 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 19 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 20 N -0.92 -50.13 13.05 21.66 0.28 -49.84 16 21 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 25 C -0.02 -0.32 9.44 22.44 0.21 -0.11 16 26 C -0.22 -2.66 8.99 22.21 0.20 -2.46 16 27 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.07 0.24 7.65 -2.39 -0.02 0.22 16 29 H 0.07 0.24 7.65 -2.38 -0.02 0.22 16 30 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.13 2.80 7.64 -2.91 -0.02 2.77 16 32 H 0.13 1.87 8.09 -2.39 -0.02 1.85 16 33 H 0.13 1.87 8.08 -2.39 -0.02 1.85 16 34 H 0.06 2.23 5.51 -2.39 -0.01 2.21 16 35 H 0.05 2.17 5.51 -2.39 -0.01 2.15 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 2.16 5.52 -2.39 -0.01 2.15 16 39 H 0.06 2.23 5.51 -2.39 -0.01 2.22 16 40 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 41 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 43 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.17 1.21 7.04 -2.91 -0.02 1.19 16 45 H 0.16 0.95 6.27 -2.91 -0.02 0.94 16 Total: -1.00 -74.90 362.16 5.40 -69.50 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.29 Total: 31.96 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 5.44 Total: -11.61 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -1.34 Total: -81.23 kcal Atomic # 8 Polarization: -53.45 SS G_CDS: -1.01 Total: -54.46 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -74.90 5.40 -69.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273598104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.868 kcal (2) G-P(sol) polarization free energy of solvation -74.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds