Wall clock time and date at job start Tue Mar 31 2020 13:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47121 * 2 1 4 4 C 1.52997 * 109.47000 * 119.99967 * 2 1 3 5 5 H 1.08997 * 109.48594 * 59.97765 * 4 2 1 6 6 C 1.53095 * 109.48067 * 180.02562 * 4 2 1 7 7 C 1.53175 * 109.16290 * 177.60156 * 6 4 2 8 8 H 1.09003 * 109.54604 * 183.06869 * 7 6 4 9 9 N 1.46500 * 109.54559 * 62.88855 * 7 6 4 10 10 S 1.65596 * 120.00058 * 144.99764 * 9 7 6 11 11 O 1.42094 * 104.27856 * 308.92711 * 10 9 7 12 12 O 1.42107 * 104.27594 * 181.07142 * 10 9 7 13 13 C 1.81402 * 104.45128 * 65.00318 * 10 9 7 14 14 C 1.52994 * 109.47351 * 179.97438 * 13 10 9 15 15 C 1.53001 * 109.47367 * 179.97438 * 14 13 10 16 16 C 1.50697 * 109.46995 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00449 * 359.72153 * 16 15 14 18 18 C 1.37885 * 119.99686 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.72095 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.72528 * 18 16 15 21 21 H 1.48498 * 109.47416 * 59.99812 * 20 18 16 22 22 H 1.48508 * 109.46609 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46903 * 299.99397 * 20 18 16 24 24 C 1.53176 * 109.03880 * 303.01963 * 7 6 4 25 25 C 1.53091 * 109.16337 * 56.97995 * 24 7 6 26 26 O 1.42903 * 109.41512 * 302.38988 * 25 24 7 27 27 H 1.08998 * 109.47752 * 299.99771 * 1 2 3 28 28 H 1.09005 * 109.47522 * 60.00354 * 1 2 3 29 29 H 1.09008 * 109.47405 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47336 * 239.99899 * 2 1 3 31 31 H 1.09000 * 109.46999 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47289 * 300.00087 * 3 2 1 33 33 H 1.08997 * 109.47098 * 59.99753 * 3 2 1 34 34 H 1.09002 * 109.51767 * 57.69941 * 6 4 2 35 35 H 1.08997 * 109.57354 * 297.53929 * 6 4 2 36 36 H 0.97006 * 119.99528 * 324.99941 * 9 7 6 37 37 H 1.08998 * 109.47075 * 59.99397 * 13 10 9 38 38 H 1.09001 * 109.46898 * 299.99651 * 13 10 9 39 39 H 1.08998 * 109.47353 * 59.99776 * 14 13 10 40 40 H 1.09006 * 109.47395 * 300.00032 * 14 13 10 41 41 H 1.08998 * 109.47065 * 59.99602 * 15 14 13 42 42 H 1.09001 * 109.46892 * 299.99866 * 15 14 13 43 43 H 0.97000 * 119.99651 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.52426 * 176.88451 * 24 7 6 45 45 H 1.08998 * 109.52227 * 297.07537 * 24 7 6 46 46 H 1.09004 * 109.48351 * 182.41013 * 25 24 7 47 47 H 1.09002 * 109.48159 * 62.37378 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6763 -1.7488 1.2497 6 6 3.5708 -0.7208 1.2498 7 6 4.0733 -1.3912 2.5321 8 1 5.1619 -1.3458 2.5649 9 7 3.6403 -2.7906 2.5557 10 16 4.6196 -3.9493 3.2193 11 8 5.8773 -3.7481 2.5893 12 8 3.8978 -5.1607 3.0438 13 6 4.7111 -3.5120 4.9775 14 6 5.5985 -4.5213 5.7086 15 6 5.6761 -4.1520 7.1914 16 6 6.5507 -5.1459 7.9114 17 1 7.0020 -5.9620 7.3669 18 6 6.7705 -5.0161 9.2664 19 7 6.2213 -4.0219 9.9294 20 14 7.8483 -6.2525 10.1603 21 1 9.2119 -6.2366 9.5725 22 1 7.9247 -5.8932 11.5993 23 1 7.2645 -7.6107 10.0200 24 6 3.4914 -0.6543 3.7423 25 6 1.9636 -0.6573 3.6455 26 8 1.5643 -0.0474 2.4164 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.9347 0.3058 1.2088 35 1 3.9365 -1.2718 0.3833 36 1 2.7799 -3.0383 2.1824 37 1 3.7102 -3.5293 5.4087 38 1 5.1344 -2.5130 5.0818 39 1 6.5994 -4.5044 5.2775 40 1 5.1748 -5.5202 5.6043 41 1 4.6753 -4.1686 7.6228 42 1 6.1001 -3.1533 7.2954 43 1 6.3762 -3.9304 10.8826 44 1 3.7993 -1.1584 4.6584 45 1 3.8538 0.3736 3.7517 46 1 1.5452 -0.0972 4.4818 47 1 1.5993 -1.6842 3.6770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330625583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:21 Heat of formation + Delta-G solvation = -176.174788 kcal Electronic energy + Delta-G solvation = -26029.335599 eV Core-core repulsion = 22337.075746 eV Total energy + Delta-G solvation = -3692.259854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.95135 -38.23179 -37.10576 -36.83456 -36.47478 -35.83029 -34.18123 -31.74389 -31.00658 -29.64385 -27.95041 -25.94043 -25.67425 -24.52150 -22.46676 -21.56318 -20.97678 -20.00423 -18.79249 -18.56372 -17.47801 -17.21836 -17.18081 -16.74425 -16.51947 -16.37123 -15.82256 -15.70737 -15.27881 -14.80926 -14.50444 -14.27389 -14.20596 -14.05000 -13.56681 -13.53754 -13.32714 -13.23449 -13.13712 -12.99292 -12.91705 -12.76954 -12.71774 -12.61181 -12.53493 -12.24755 -12.12308 -11.93100 -11.74483 -11.63680 -11.54953 -11.37890 -11.12179 -11.05751 -10.57158 -10.51134 -10.22434 -8.22995 -6.33717 -0.76589 1.39950 1.42161 1.50097 1.73602 2.39432 2.72427 2.90067 3.10645 3.19421 3.59609 3.71504 3.76285 3.85311 3.89942 4.00068 4.13351 4.14928 4.31276 4.34081 4.41629 4.49379 4.52760 4.63784 4.75670 4.80900 4.88045 4.91463 4.93039 4.96441 5.05771 5.07144 5.09815 5.13550 5.19339 5.26175 5.30610 5.45208 5.50018 5.59106 5.63292 5.79303 6.01863 6.19689 6.36965 6.81752 7.35494 8.88155 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.025066 B = 0.002762 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.788188 B =10134.523594 C =10711.655260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.144 4.144 4 C 0.089 3.911 5 H 0.058 0.942 6 C -0.151 4.151 7 C 0.138 3.862 8 H 0.099 0.901 9 N -1.104 6.104 10 S 2.628 3.372 11 O -0.989 6.989 12 O -0.993 6.993 13 C -0.610 4.610 14 C -0.106 4.106 15 C 0.033 3.967 16 C -0.553 4.553 17 H 0.059 0.941 18 C 0.004 3.996 19 N -0.929 5.929 20 Si 0.961 3.039 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.268 1.268 24 C -0.183 4.183 25 C 0.058 3.942 26 O -0.382 6.382 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.421 0.579 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.003 0.997 42 H 0.004 0.996 43 H 0.265 0.735 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.727 11.563 -19.965 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.201 4.201 4 C 0.032 3.968 5 H 0.076 0.924 6 C -0.190 4.190 7 C 0.032 3.968 8 H 0.117 0.883 9 N -0.866 5.866 10 S 2.723 3.277 11 O -0.978 6.978 12 O -0.983 6.983 13 C -0.741 4.741 14 C -0.145 4.145 15 C -0.006 4.006 16 C -0.592 4.592 17 H 0.077 0.923 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.222 4.222 25 C -0.018 4.018 26 O -0.301 6.301 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.258 0.742 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.021 0.979 42 H 0.023 0.977 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.120 0.880 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.284 11.141 -20.246 25.293 hybrid contribution 0.153 -0.528 1.355 1.463 sum -10.131 10.613 -18.890 23.919 Atomic orbital electron populations 1.21752 0.94697 1.01689 1.01904 1.21196 0.96521 0.97246 0.95712 1.21803 1.01179 0.95308 1.01790 1.22208 0.92613 0.95701 0.86318 0.92396 1.22514 0.96588 1.02761 0.97108 1.21073 1.00024 0.79231 0.96510 0.88323 1.55489 1.35187 1.19814 1.76095 1.04269 0.73254 0.72912 0.77234 1.93535 1.44730 1.85910 1.73663 1.93537 1.73091 1.45419 1.86280 1.30616 1.10489 1.10398 1.22553 1.21308 0.98149 0.96957 0.98094 1.18942 0.95783 0.95784 0.90047 1.21716 1.30626 1.12510 0.94299 0.92259 1.25914 0.97359 0.97597 0.98605 1.70057 1.45512 1.32231 1.09073 0.85560 0.79342 0.79244 0.77301 1.19236 1.20637 1.19308 1.22862 0.97772 1.02857 0.98716 1.22595 0.93589 0.98670 0.86976 1.87922 1.74720 1.53884 1.13601 0.92970 0.92031 0.92899 0.89059 0.92059 0.92283 0.92956 0.88280 0.89438 0.74161 0.83421 0.83494 0.91578 0.91709 0.97858 0.97713 0.92632 0.89846 0.88589 0.88010 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.05 71.98 0.65 -1.16 16 2 C -0.09 -1.08 2.81 -10.80 -0.03 -1.11 16 3 C -0.14 -1.71 8.70 71.98 0.63 -1.09 16 4 C 0.09 1.27 2.19 30.62 0.07 1.33 16 5 H 0.06 0.80 6.70 -2.39 -0.02 0.79 16 6 C -0.15 -2.06 4.82 30.68 0.15 -1.91 16 7 C 0.14 2.28 3.05 45.11 0.14 2.42 16 8 H 0.10 1.70 7.48 -2.39 -0.02 1.68 16 9 N -1.10 -20.79 4.76 -168.89 -0.80 -21.59 16 10 S 2.63 71.67 5.44 -56.49 -0.31 71.36 16 11 O -0.99 -32.83 17.39 -127.65 -2.22 -35.05 16 12 O -0.99 -33.34 18.08 -127.65 -2.31 -35.65 16 13 C -0.61 -17.33 5.18 71.98 0.37 -16.95 16 14 C -0.11 -4.19 5.16 30.59 0.16 -4.03 16 15 C 0.03 1.65 4.97 29.85 0.15 1.80 16 16 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 17 H 0.06 3.22 7.74 -2.92 -0.02 3.20 16 18 C 0.00 0.21 5.46 84.66 0.46 0.67 16 19 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 20 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 C -0.18 -2.80 5.82 30.68 0.18 -2.63 16 25 C 0.06 0.91 6.68 72.01 0.48 1.39 16 26 O -0.38 -6.44 9.06 -148.98 -1.35 -7.79 16 27 H 0.05 0.79 7.68 -2.39 -0.02 0.77 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.66 6.38 -2.39 -0.02 0.65 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 0.76 7.68 -2.39 -0.02 0.74 16 34 H 0.10 1.20 6.31 -2.39 -0.02 1.19 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.42 6.64 7.04 -96.74 -0.68 5.95 16 37 H 0.15 3.65 8.14 -2.39 -0.02 3.63 16 38 H 0.15 3.59 6.88 -2.39 -0.02 3.57 16 39 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 41 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.08 1.31 5.82 -2.39 -0.01 1.30 16 45 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.05 0.81 7.63 -2.39 -0.02 0.79 16 Total: -1.00 -72.78 375.23 -0.78 -73.56 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.26 Total: 16.36 kcal Atomic # 6 Polarization: -55.85 SS G_CDS: 3.63 Total: -52.22 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -0.52 Total: -76.50 kcal Atomic # 8 Polarization: -72.61 SS G_CDS: -5.88 Total: -78.49 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 71.67 SS G_CDS: -0.31 Total: 71.36 kcal Total: -72.78 -0.78 -73.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330625583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.617 kcal (2) G-P(sol) polarization free energy of solvation -72.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds