Wall clock time and date at job start Tue Mar 31 2020 13:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 C 1.53003 * 109.46969 * 119.99890 * 2 1 3 5 5 H 1.08998 * 109.47678 * 299.97610 * 4 2 1 6 6 C 1.53097 * 109.48584 * 180.02562 * 4 2 1 7 7 C 1.53169 * 109.15960 * 182.49777 * 6 4 2 8 8 H 1.09008 * 109.54448 * 296.93137 * 7 6 4 9 9 N 1.46507 * 109.54524 * 176.75810 * 7 6 4 10 10 S 1.65598 * 119.99849 * 145.17400 * 9 7 6 11 11 O 1.42095 * 104.28128 * 308.92605 * 10 9 7 12 12 O 1.42104 * 104.27651 * 181.07016 * 10 9 7 13 13 C 1.81399 * 104.45041 * 65.00207 * 10 9 7 14 14 C 1.52997 * 109.47147 * 179.97438 * 13 10 9 15 15 C 1.53006 * 109.47127 * 179.97438 * 14 13 10 16 16 C 1.50698 * 109.47184 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 C 1.53179 * 109.11440 * 56.84532 * 7 6 4 25 25 C 1.53093 * 109.16056 * 303.06964 * 24 7 6 26 26 O 1.42901 * 109.48061 * 59.99620 * 4 2 1 27 27 H 1.08998 * 109.47269 * 300.00320 * 1 2 3 28 28 H 1.09004 * 109.47205 * 60.00113 * 1 2 3 29 29 H 1.08998 * 109.47551 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47136 * 239.99141 * 2 1 3 31 31 H 1.09000 * 109.46927 * 299.99315 * 3 2 1 32 32 H 1.08998 * 109.47233 * 59.99658 * 3 2 1 33 33 H 1.08997 * 109.47339 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.59810 * 62.54389 * 6 4 2 35 35 H 1.09007 * 109.44842 * 302.35668 * 6 4 2 36 36 H 0.96998 * 119.99663 * 325.17930 * 9 7 6 37 37 H 1.09001 * 109.47190 * 59.99892 * 13 10 9 38 38 H 1.09004 * 109.47089 * 299.99759 * 13 10 9 39 39 H 1.09001 * 109.46832 * 60.00079 * 14 13 10 40 40 H 1.09001 * 109.47502 * 299.99601 * 14 13 10 41 41 H 1.09001 * 109.47002 * 60.00426 * 15 14 13 42 42 H 1.08993 * 109.46955 * 299.99989 * 15 14 13 43 43 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 44 44 H 1.09004 * 109.52068 * 62.97099 * 24 7 6 45 45 H 1.09000 * 109.52595 * 183.09579 * 24 7 6 46 46 H 1.09002 * 109.48190 * 177.59245 * 25 24 7 47 47 H 1.09006 * 109.47694 * 297.61085 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6770 -0.2072 2.1393 6 6 3.5709 -0.7209 1.2500 7 6 4.0733 -1.4983 2.4704 8 1 3.7529 -0.9931 3.3817 9 7 5.5362 -1.5695 2.4380 10 16 6.3988 -1.5257 3.8510 11 8 5.8944 -0.3865 4.5343 12 8 7.7561 -1.5891 3.4351 13 6 5.9267 -3.0481 4.7169 14 6 6.6670 -3.1251 6.0536 15 6 6.2683 -4.4089 6.7843 16 6 6.9980 -4.4851 8.1006 17 1 7.6779 -3.6964 8.3876 18 6 6.7970 -5.5610 8.9390 19 7 5.9689 -6.5211 8.5899 20 14 7.7010 -5.6550 10.5710 21 1 7.3142 -6.9011 11.2802 22 1 7.3423 -4.4791 11.4041 23 1 9.1657 -5.6597 10.3261 24 6 3.4905 -2.9145 2.4377 25 6 1.9627 -2.8283 2.3922 26 8 1.5637 -2.0685 1.2496 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 1.6768 1.9562 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 3.9363 0.3050 1.2959 35 1 3.9344 -1.1976 0.3395 36 1 5.9995 -1.6422 1.5890 37 1 6.1910 -3.9109 4.1054 38 1 4.8515 -3.0456 4.8963 39 1 6.4030 -2.2624 6.6653 40 1 7.7421 -3.1279 5.8739 41 1 6.5320 -5.2719 6.1727 42 1 5.1933 -4.4058 6.9640 43 1 5.4992 -6.4721 7.7426 44 1 3.8524 -3.4369 1.5520 45 1 3.7993 -3.4563 3.3317 46 1 1.5437 -3.8324 2.3256 47 1 1.5990 -2.3420 3.2974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330625584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:25 Heat of formation + Delta-G solvation = -184.577315 kcal Electronic energy + Delta-G solvation = -25762.810990 eV Core-core repulsion = 22070.186775 eV Total energy + Delta-G solvation = -3692.624215 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.82293 -38.30819 -37.20362 -36.97351 -36.79885 -36.15686 -34.27433 -31.95533 -31.06547 -29.33548 -27.96921 -25.56596 -25.30147 -24.62178 -22.78378 -21.67255 -21.18048 -20.39040 -19.16153 -18.64171 -17.81452 -17.39508 -17.27505 -16.89142 -16.25475 -15.70167 -15.68347 -15.61901 -15.41301 -15.29219 -15.00390 -14.63705 -14.20393 -13.95100 -13.69721 -13.57471 -13.33072 -13.26280 -13.20923 -13.10220 -12.96870 -12.72616 -12.61712 -12.55284 -12.41242 -12.35364 -12.08984 -11.95782 -11.88333 -11.78394 -11.64405 -11.47210 -11.12401 -10.76436 -10.57211 -10.52613 -10.43305 -8.72090 -6.43204 -0.85184 1.52035 1.59669 1.64773 1.79342 2.53820 2.64297 2.78290 3.10240 3.12646 3.52992 3.57660 3.69527 3.75628 3.83756 3.94666 3.99839 4.12212 4.19716 4.25138 4.37824 4.40323 4.45765 4.48134 4.66029 4.71674 4.77452 4.80606 4.82620 4.84951 4.87720 5.01726 5.04553 5.05455 5.13442 5.23083 5.25362 5.30299 5.35905 5.44982 5.48256 5.94207 6.02111 6.14959 6.29269 6.54643 7.37566 8.69598 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.002781 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.881753 B =10066.439801 C =10958.397946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.149 4.149 4 C 0.092 3.908 5 H 0.060 0.940 6 C -0.149 4.149 7 C 0.139 3.861 8 H 0.089 0.911 9 N -1.100 6.100 10 S 2.629 3.371 11 O -0.988 6.988 12 O -0.991 6.991 13 C -0.613 4.613 14 C -0.099 4.099 15 C 0.016 3.984 16 C -0.629 4.629 17 H 0.051 0.949 18 C -0.036 4.036 19 N -0.935 5.935 20 Si 1.115 2.885 21 H -0.282 1.282 22 H -0.269 1.269 23 H -0.270 1.270 24 C -0.184 4.184 25 C 0.060 3.940 26 O -0.386 6.386 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.427 0.573 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.000 1.000 42 H 0.002 0.998 43 H 0.258 0.742 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 12.744 -20.190 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.206 4.206 4 C 0.034 3.966 5 H 0.078 0.922 6 C -0.188 4.188 7 C 0.031 3.969 8 H 0.107 0.893 9 N -0.860 5.860 10 S 2.724 3.276 11 O -0.978 6.978 12 O -0.981 6.981 13 C -0.744 4.744 14 C -0.139 4.139 15 C -0.022 4.022 16 C -0.667 4.667 17 H 0.069 0.931 18 C -0.234 4.234 19 N -0.573 5.573 20 Si 0.936 3.064 21 H -0.207 1.207 22 H -0.194 1.194 23 H -0.195 1.195 24 C -0.223 4.223 25 C -0.017 4.017 26 O -0.306 6.306 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.264 0.736 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.101 0.899 46 H 0.127 0.873 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.676 12.493 -18.587 24.396 hybrid contribution -0.189 0.068 -1.364 1.379 sum -9.865 12.561 -19.951 25.557 Atomic orbital electron populations 1.21751 0.94433 1.01874 1.01935 1.21088 0.96665 0.96089 0.96507 1.21897 1.01582 0.94441 1.02728 1.22260 0.91943 0.83181 0.99237 0.92155 1.22540 0.96442 1.01947 0.97856 1.21038 0.78288 0.96516 1.01014 0.89331 1.55362 1.15468 1.91346 1.23853 1.04227 0.72915 0.76430 0.74038 1.93538 1.81140 1.47678 1.75462 1.93542 1.35383 1.88098 1.81091 1.30657 1.11994 1.22343 1.09385 1.21183 0.99307 1.00558 0.92804 1.19120 0.95537 0.92906 0.94680 1.22562 1.28984 1.09516 1.05657 0.93109 1.27392 0.96839 0.92088 1.07084 1.70922 1.27429 1.34596 1.24318 0.82967 0.75438 0.76783 0.71253 1.20686 1.19413 1.19488 1.22937 0.97445 0.97107 1.04822 1.22644 0.92933 0.97384 0.88788 1.87917 1.74733 1.23701 1.44214 0.92852 0.91825 0.92881 0.90484 0.91212 0.92390 0.91876 0.89105 0.89394 0.73588 0.83341 0.83612 0.91577 0.91670 0.98155 0.98001 0.93247 0.89205 0.89910 0.87285 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.05 71.98 0.65 -1.13 16 2 C -0.08 -1.06 2.72 -10.79 -0.03 -1.09 16 3 C -0.15 -1.53 8.84 71.98 0.64 -0.89 16 4 C 0.09 1.37 2.22 30.63 0.07 1.44 16 5 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 6 C -0.15 -2.12 4.52 30.68 0.14 -1.98 16 7 C 0.14 2.38 2.77 45.11 0.13 2.51 16 8 H 0.09 1.66 7.49 -2.38 -0.02 1.64 16 9 N -1.10 -20.58 5.37 -168.88 -0.91 -21.48 16 10 S 2.63 72.31 5.44 -56.49 -0.31 72.00 16 11 O -0.99 -33.14 17.39 -127.65 -2.22 -35.36 16 12 O -0.99 -33.42 18.08 -127.65 -2.31 -35.73 16 13 C -0.61 -17.57 5.31 71.98 0.38 -17.18 16 14 C -0.10 -3.98 5.16 30.60 0.16 -3.83 16 15 C 0.02 0.79 4.28 29.85 0.13 0.92 16 16 C -0.63 -35.97 9.11 25.60 0.23 -35.74 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 18 C -0.04 -2.09 5.46 84.65 0.46 -1.63 16 19 N -0.94 -57.27 13.65 21.45 0.29 -56.98 16 20 Si 1.11 50.18 29.90 68.60 2.05 52.23 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 24 C -0.18 -2.90 5.70 30.69 0.17 -2.72 16 25 C 0.06 0.93 6.84 72.01 0.49 1.42 16 26 O -0.39 -6.75 9.73 -148.98 -1.45 -8.20 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.05 0.78 7.68 -2.39 -0.02 0.76 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.62 6.49 -2.39 -0.02 0.61 16 34 H 0.09 1.22 6.58 -2.39 -0.02 1.20 16 35 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.43 6.21 8.80 -96.75 -0.85 5.36 16 37 H 0.15 3.68 8.14 -2.39 -0.02 3.66 16 38 H 0.15 3.58 6.74 -2.39 -0.02 3.56 16 39 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.00 0.01 8.01 -2.39 -0.02 -0.01 16 42 H 0.00 0.09 8.01 -2.39 -0.02 0.07 16 43 H 0.26 15.75 7.22 -92.71 -0.67 15.08 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 1.32 5.88 -2.39 -0.01 1.30 16 46 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -75.19 379.37 -1.04 -76.23 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.19 Total: 17.19 kcal Atomic # 6 Polarization: -63.53 SS G_CDS: 3.62 Total: -59.91 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -0.61 Total: -78.46 kcal Atomic # 8 Polarization: -73.31 SS G_CDS: -5.98 Total: -79.29 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.05 Total: 52.23 kcal Atomic # 16 Polarization: 72.31 SS G_CDS: -0.31 Total: 72.00 kcal Total: -75.19 -1.04 -76.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330625584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.349 kcal (2) G-P(sol) polarization free energy of solvation -75.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds