Wall clock time and date at job start Tue Mar 31 2020 13:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47086 * 2 1 4 4 C 1.52999 * 109.47055 * 119.99793 * 2 1 3 5 5 H 1.08994 * 109.48305 * 60.02713 * 4 2 1 6 6 C 1.53114 * 109.48256 * 179.97438 * 4 2 1 7 7 C 1.53176 * 109.15703 * 177.50341 * 6 4 2 8 8 H 1.08996 * 109.54358 * 63.06207 * 7 6 4 9 9 N 1.46500 * 109.54067 * 183.24258 * 7 6 4 10 10 S 1.65606 * 119.99825 * 214.82147 * 9 7 6 11 11 O 1.42097 * 104.27560 * 308.93171 * 10 9 7 12 12 O 1.42091 * 104.27561 * 181.06907 * 10 9 7 13 13 C 1.81407 * 104.44700 * 64.99932 * 10 9 7 14 14 C 1.52996 * 109.46799 * 180.02562 * 13 10 9 15 15 C 1.52998 * 109.46929 * 180.02562 * 14 13 10 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47483 * 269.99808 * 20 18 16 22 22 H 1.48499 * 109.47134 * 30.00322 * 20 18 16 23 23 H 1.48507 * 109.46904 * 150.00145 * 20 18 16 24 24 C 1.53172 * 109.11062 * 303.15283 * 7 6 4 25 25 C 1.53088 * 109.16669 * 56.93546 * 24 7 6 26 26 O 1.42901 * 109.48471 * 300.00249 * 4 2 1 27 27 H 1.09000 * 109.47369 * 299.99662 * 1 2 3 28 28 H 1.09001 * 109.47671 * 60.00284 * 1 2 3 29 29 H 1.09002 * 109.46982 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47596 * 239.99855 * 2 1 3 31 31 H 1.08998 * 109.46897 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46633 * 300.00351 * 3 2 1 33 33 H 1.09000 * 109.46740 * 59.99953 * 3 2 1 34 34 H 1.09001 * 109.45022 * 57.64110 * 6 4 2 35 35 H 1.09002 * 109.59381 * 297.45411 * 6 4 2 36 36 H 0.96998 * 120.00233 * 34.82265 * 9 7 6 37 37 H 1.09000 * 109.46876 * 60.00006 * 13 10 9 38 38 H 1.09002 * 109.47096 * 299.99793 * 13 10 9 39 39 H 1.09000 * 109.47441 * 60.00303 * 14 13 10 40 40 H 1.09002 * 109.47087 * 299.99749 * 14 13 10 41 41 H 1.09001 * 109.47671 * 60.00109 * 15 14 13 42 42 H 1.09006 * 109.47297 * 299.99829 * 15 14 13 43 43 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 44 44 H 1.08999 * 109.52800 * 176.84420 * 24 7 6 45 45 H 1.09008 * 109.52618 * 296.96899 * 24 7 6 46 46 H 1.08999 * 109.47963 * 62.37364 * 25 24 7 47 47 H 1.08998 * 109.48817 * 182.40107 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6771 -1.7490 1.2492 6 6 3.5711 -0.7219 1.2492 7 6 4.0734 -1.3901 2.5327 8 1 3.7530 -2.4318 2.5510 9 7 5.5364 -1.3264 2.5781 10 16 6.3991 -2.5719 3.2467 11 8 5.7935 -2.7758 4.5159 12 8 7.7538 -2.1570 3.1394 13 6 6.0771 -3.9834 2.1537 14 6 6.8281 -5.2115 2.6721 15 6 6.5571 -6.4018 1.7499 16 6 7.2972 -7.6114 2.2602 17 1 7.9009 -7.5382 3.1528 18 6 7.2037 -8.8113 1.5876 19 7 6.4690 -8.9002 0.5004 20 14 8.1218 -10.3103 2.2198 21 1 9.4740 -10.3571 1.6079 22 1 8.2494 -10.2261 3.6968 23 1 7.3715 -11.5395 1.8570 24 6 3.4907 -0.6536 3.7427 25 6 1.9629 -0.6573 3.6455 26 8 1.5637 -0.0478 2.4162 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.9345 0.3048 1.2067 35 1 3.9363 -1.2747 0.3837 36 1 5.9997 -0.5547 2.2165 37 1 6.4180 -3.7474 1.1456 38 1 5.0075 -4.1927 2.1360 39 1 6.4868 -5.4473 3.6801 40 1 7.8977 -5.0024 2.6902 41 1 6.8986 -6.1659 0.7421 42 1 5.4874 -6.6111 1.7314 43 1 5.9926 -8.1217 0.1720 44 1 3.7986 -1.1574 4.6589 45 1 3.8534 0.3744 3.7529 46 1 1.5993 -1.6844 3.6769 47 1 1.5440 -0.0977 4.4818 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330625585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:30 Heat of formation + Delta-G solvation = -158.865805 kcal Electronic energy + Delta-G solvation = -25785.105411 eV Core-core repulsion = 22093.596131 eV Total energy + Delta-G solvation = -3691.509280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.16254 -37.04249 -36.23352 -35.82213 -35.33780 -34.97305 -32.32874 -31.13103 -30.36746 -27.53529 -27.44317 -24.82206 -23.93553 -23.51167 -21.19750 -21.00887 -20.18579 -19.24707 -17.67056 -17.10418 -16.82821 -16.44969 -15.91663 -15.81872 -15.31668 -15.07764 -14.58978 -14.54759 -14.27721 -14.00267 -13.78043 -13.45229 -13.35385 -12.89607 -12.35882 -12.16709 -12.10386 -12.09417 -12.08339 -11.95717 -11.91963 -11.86089 -11.59213 -11.51897 -11.30499 -11.13446 -10.97610 -10.83351 -10.81112 -10.46469 -10.16456 -10.13734 -9.93391 -9.82019 -9.51227 -8.61844 -8.39625 -6.43808 -4.13798 0.34240 2.70467 3.41333 3.44686 3.47484 3.60585 3.81358 4.20612 4.27456 4.40452 4.44038 4.49367 4.63286 4.70474 4.71652 4.87478 4.90284 4.99908 5.03664 5.13271 5.17213 5.34242 5.34737 5.36065 5.42155 5.50913 5.52250 5.60927 5.66170 5.71761 5.73769 5.77723 5.87321 5.97969 6.05194 6.09945 6.13222 6.26232 6.66866 6.79398 6.95659 7.22362 7.34395 8.10037 8.38605 8.80084 9.58539 10.96981 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.002918 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.515569 B = 9592.911828 C =10590.855085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.146 4.146 4 C 0.095 3.905 5 H 0.062 0.938 6 C -0.160 4.160 7 C 0.153 3.847 8 H 0.084 0.916 9 N -1.118 6.118 10 S 2.601 3.399 11 O -0.959 6.959 12 O -0.962 6.962 13 C -0.613 4.613 14 C -0.098 4.098 15 C 0.017 3.983 16 C -0.607 4.607 17 H 0.052 0.948 18 C 0.016 3.984 19 N -0.912 5.912 20 Si 1.072 2.928 21 H -0.287 1.287 22 H -0.287 1.287 23 H -0.284 1.284 24 C -0.174 4.174 25 C 0.063 3.937 26 O -0.373 6.373 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.415 0.585 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.011 0.989 42 H 0.011 0.989 43 H 0.268 0.732 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.222 21.322 0.229 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.203 4.203 4 C 0.037 3.963 5 H 0.080 0.920 6 C -0.199 4.199 7 C 0.045 3.955 8 H 0.102 0.898 9 N -0.875 5.875 10 S 2.696 3.304 11 O -0.949 6.949 12 O -0.952 6.952 13 C -0.745 4.745 14 C -0.138 4.138 15 C -0.021 4.021 16 C -0.646 4.646 17 H 0.071 0.929 18 C -0.188 4.188 19 N -0.548 5.548 20 Si 0.900 3.100 21 H -0.213 1.213 22 H -0.213 1.213 23 H -0.209 1.209 24 C -0.214 4.214 25 C -0.015 4.015 26 O -0.292 6.292 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.249 0.751 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.030 0.970 42 H 0.029 0.971 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.596 19.812 0.798 22.482 hybrid contribution -0.184 1.448 -0.462 1.531 sum -10.780 21.260 0.336 23.839 Atomic orbital electron populations 1.21771 0.94498 1.01829 1.02115 1.21151 0.96677 0.97042 0.95709 1.21835 1.00884 0.95577 1.02045 1.22125 0.91902 0.96000 0.86293 0.92018 1.22663 0.96711 1.02812 0.97734 1.20762 0.79243 1.00147 0.95350 0.89775 1.55821 1.14877 1.36502 1.80279 1.05307 0.73593 0.75533 0.75921 1.93571 1.77547 1.85779 1.37963 1.93583 1.33986 1.80438 1.87234 1.30593 1.10789 1.16977 1.16107 1.21356 0.98583 0.92785 1.01040 1.19186 0.96779 0.91933 0.94179 1.22095 1.32578 0.96071 1.13819 0.92950 1.25891 0.96904 1.01326 0.94687 1.70773 1.28632 1.33658 1.21748 0.83501 0.75880 0.75287 0.75335 1.21337 1.21343 1.20917 1.22768 0.96444 1.02462 0.99691 1.22575 0.93464 0.98520 0.86930 1.87915 1.74472 1.53631 1.13225 0.91748 0.92803 0.92833 0.90021 0.92591 0.92949 0.91758 0.89725 0.89928 0.75112 0.85316 0.85746 0.91372 0.91385 0.97046 0.97064 0.92150 0.89017 0.90451 0.92816 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.05 37.15 0.34 -0.69 16 2 C -0.09 -0.63 2.81 -90.62 -0.25 -0.88 16 3 C -0.15 -1.01 8.70 37.16 0.32 -0.69 16 4 C 0.10 0.77 2.37 -26.67 -0.06 0.71 16 5 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 6 C -0.16 -1.25 4.67 -26.58 -0.12 -1.37 16 7 C 0.15 1.43 2.64 -67.75 -0.18 1.25 16 8 H 0.08 0.77 7.16 -51.93 -0.37 0.40 16 9 N -1.12 -11.39 5.37 -4.74 -0.03 -11.42 16 10 S 2.60 36.94 5.38 -107.50 -0.58 36.36 16 11 O -0.96 -16.14 17.20 -57.54 -0.99 -17.13 16 12 O -0.96 -16.66 18.08 -57.54 -1.04 -17.70 16 13 C -0.61 -9.16 5.96 37.16 0.22 -8.94 16 14 C -0.10 -1.99 5.16 -26.73 -0.14 -2.13 16 15 C 0.02 0.44 4.28 -27.88 -0.12 0.32 16 16 C -0.61 -17.29 9.11 -34.44 -0.31 -17.60 16 17 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 19 N -0.91 -27.67 13.65 55.43 0.76 -26.91 16 20 Si 1.07 25.28 29.90 -169.99 -5.08 20.20 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C -0.17 -1.63 5.75 -26.60 -0.15 -1.78 16 25 C 0.06 0.52 6.84 37.20 0.25 0.78 16 26 O -0.37 -3.39 9.06 -35.23 -0.32 -3.71 16 27 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.37 6.38 -51.93 -0.33 0.04 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 34 H 0.08 0.62 6.31 -51.93 -0.33 0.30 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.42 3.47 8.80 -34.47 -0.30 3.16 16 37 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 38 H 0.12 1.62 7.45 -51.92 -0.39 1.24 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 42 H 0.01 0.28 8.01 -51.93 -0.42 -0.13 16 43 H 0.27 8.02 7.22 -40.82 -0.29 7.73 16 44 H 0.09 0.98 7.52 -51.93 -0.39 0.59 16 45 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -35.16 380.43 -10.16 -45.32 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.31 Total: -0.09 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: -0.31 Total: -30.67 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.73 Total: -38.33 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -2.35 Total: -38.54 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.08 Total: 20.20 kcal Atomic # 16 Polarization: 36.94 SS G_CDS: -0.58 Total: 36.36 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.16 -10.16 -45.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330625585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.543 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds